mRNA_H-paniculata_contig9980.17558.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM) HSP 1 Score: 155 bits (392), Expect = 6.140e-44 Identity = 80/195 (41.03%), Postives = 120/195 (61.54%), Query Frame = 1 Query: 34 FEHRGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIGF*CRGSTTLFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKYAQTN 618 + +R +VG+LMY +T TRPD A AV + + + + KRI +YL DLG F + G + DA+WAGD++ R+STT Y+F +NGS ISW S++Q V S T+A+Y+A A +E V+LR+LL +G C G+TT+FQDN+ + L+K H RTKHI ++H +R+ + V+ L+Y T+ Sbjct: 33 YPYRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHRVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTD 226
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 157 bits (396), Expect = 1.550e-43 Identity = 80/197 (40.61%), Postives = 121/197 (61.42%), Query Frame = 1 Query: 34 FEHRGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIGF*CRGSTTLFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKYAQTNPL 624 + +R +VG+LMY +T TRPD A AV + + + + + KRI +YL DLG F + G + DA+WAGD++ R+STT Y+F +NGS ISW S++Q V S T+A+Y+A A +E V+LR+LL +G C G+TT FQDN+ + L+K H RTKHI ++H +R+ + V+ L+Y T+ + Sbjct: 92 YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEM 287
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 155 bits (391), Expect = 7.350e-42 Identity = 79/197 (40.10%), Postives = 120/197 (60.91%), Query Frame = 1 Query: 34 FEHRGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIGF*CRGSTTLFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKYAQTNPL 624 + +R +VG+LMY +T TRPD A AV + + + + + KRI +YL DLG F + G + DA WAGD++ R+STT Y+F +NGS ISW S++Q V S T+A+Y+A A +E V+LR+LL +G C +TT+FQDN+ + L+K H RTKHI ++H +R+ + V+ L+Y T+ + Sbjct: 188 YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEM 383
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA) HSP 1 Score: 150 bits (379), Expect = 8.200e-42 Identity = 76/194 (39.18%), Postives = 119/194 (61.34%), Query Frame = 1 Query: 43 RGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIGF*CRGSTTLFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKYAQTNPL 624 R +VG+LMY +T TRP+ AYAV + + + + + KRI +YL D+G F G + DA+WAGD++ R+STT Y+F +NGS ISW S++Q V S T+A+Y+A A +E V+LR+LL +G+ +G+TT++QDN+ + L+K H RTKHI ++H +R+ + L+Y T+ + Sbjct: 23 RELVGALMYLATSTRPNIAYAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDVGLVFNGGIKGE-LVGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEM 215
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE) HSP 1 Score: 150 bits (380), Expect = 2.020e-41 Identity = 78/196 (39.80%), Postives = 113/196 (57.65%), Query Frame = 1 Query: 40 HRGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIG-F*CRGSTTLFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKYAQTNPL 624 +R VG +MY TRPD A AV + DPC + KR+ RYL P+ G F + +G + DADWAGD+E R+ST+ Y+F +NG ISW S+KQ+ V S T+A+Y+A EA KE V+L+ LG +G + +F+DN+ ++ L+K H RTKHI R+H +R+ G + L+Y T + Sbjct: 37 YRSAVGGIMYLMVATRPDLAAAVGSLSQFSSDPCPTHWQALKRVLRYLQATPNHGLEFT-REEGSRICGYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLKVFLGELGEMTSDEAIKMFEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVESGEVILEYCSTQDM 231
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: H3H7M7_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7M7_PHYRM) HSP 1 Score: 157 bits (396), Expect = 1.300e-40 Identity = 80/191 (41.88%), Postives = 119/191 (62.30%), Query Frame = 1 Query: 34 FEHRGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIGF*CRGSTTLFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKY 606 + +R +VG+LMY +T TRPD A AV + + + + + KRI +YL PDLG F + G + DA+WAGD++ R+STT Y+F +NGS ISW S++Q V S T+A+Y+A A +E V+LR+LL +G C G+TT+FQDN+ + L+K H RTKHI ++H +R + V+ L+Y Sbjct: 957 YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTPDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLRVKVEDKVIVLEY 1146
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR) HSP 1 Score: 152 bits (385), Expect = 2.270e-40 Identity = 79/208 (37.98%), Postives = 123/208 (59.13%), Query Frame = 1 Query: 1 VQESSSRSANSFEHRGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIGF*CRGSTTLFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKYAQTNPL 624 +E S + ++ E+R +GSL+Y +T TRPD ++AV Q R M+ P + + KR+ RYL+ P F + F+DADWAGD DRKST+ Y FKV S ++W SRKQ V S T+A+YIAA EA ++ +++R++L IG T +++DN+ + +++ RTKHI R+H +R+ G++AL Y +N + Sbjct: 258 TEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFS-ANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRELQESGIIALTYCPSNEM 464
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: H3G656_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G656_PHYRM) HSP 1 Score: 145 bits (366), Expect = 4.850e-40 Identity = 77/196 (39.29%), Postives = 111/196 (56.63%), Query Frame = 1 Query: 40 HRGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIGF*CRGSTT-LFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKYAQTNPL 624 +R VG+LMY TRPD A AV + DPC + KR+ RYL P G F + D G + DADWAGD+E R+ST+ Y F +NG ISW S+KQ+ V S T+A+Y+A EA +E V+L+ L +G +++DN+ ++ L+K H RTKHI R+H +R+ +G + L+Y T + Sbjct: 7 YRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYKDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYISTTDM 201
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A6A4ZBJ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZBJ3_9STRA) HSP 1 Score: 147 bits (370), Expect = 8.910e-40 Identity = 77/196 (39.29%), Postives = 114/196 (58.16%), Query Frame = 1 Query: 40 HRGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIG-F*CRGSTTLFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKYAQTNPL 624 +R VG LMY GTRPD A AV + DPC + KR+FRY+ G F S+ G + + DADWAGD+E R+ST+ Y F +NG ISW S+KQ+ V S T+A+Y+A EA +E ++L+ L IG + + +++DN+ ++ L+K H RTKHI R+H +R+ +G + L+Y T + Sbjct: 60 YRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIVFQAGSED-GLQGYSDADWAGDIETRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALTEATQEAIWLKAFLCEIGEMETKSAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCSTKDM 254
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Match: A0A090BBM5_HYAAE (RxLR effector candidate protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090BBM5_HYAAE) HSP 1 Score: 146 bits (369), Expect = 1.630e-39 Identity = 75/197 (38.07%), Postives = 119/197 (60.41%), Query Frame = 1 Query: 34 FEHRGMVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDLGTTFGDKSDGHGFEDFIDADWAGDVEDRKSTT*YIFKVNGSVISWYSRKQQLVTWSGTKAKYIAAGEAGKETVYLRELLGSIGF*CRGSTTLFQDNKSAVNLSKGSGAHCRTKHIGARWHGIRKWFREGVLALKYAQTNPL 624 F +R +VG+LMY +T TRPD A+AV + + + + ++ KRI +YL D+ F + G F DA+WAGD++ R+STT Y+F +NGS ISW S++Q V S T+A+Y++ A +E ++LR LL + + +TT+FQDN+ + L+K H RTKHI ++H +R+ V+AL++ T + Sbjct: 92 FPYRELVGALMYITTCTRPDIAHAVGEVAKYCERYNKSHWTAAKRIIKYLKTTQDMSIVFSGFNKGELLR-FADANWAGDLDTRRSTTGYVFFLNGSAISWNSKRQSTVATSSTEAEYMSLYSATQEAIWLRCLLKDLQYCAEVATTIFQDNQGCIALAKNPVYHSRTKHIDIKFHFLREKVASEVIALEFKPTEEM 287 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9980.17558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9980.17558.1 >prot_H-paniculata_contig9980.17558.1 ID=prot_H-paniculata_contig9980.17558.1|Name=mRNA_H-paniculata_contig9980.17558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp MVGSLMYASTGTRPDAAYAVHQAVRRMKDPCREGFSTCKRIFRYLSIVPDback to top mRNA from alignment at H-paniculata_contig9980:1016..1639- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9980.17558.1 ID=mRNA_H-paniculata_contig9980.17558.1|Name=mRNA_H-paniculata_contig9980.17558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=624bp|location=Sequence derived from alignment at H-paniculata_contig9980:1016..1639- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9980:1016..1639- >mRNA_H-paniculata_contig9980.17558.1 ID=mRNA_H-paniculata_contig9980.17558.1|Name=mRNA_H-paniculata_contig9980.17558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig9980:1016..1639- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |