mRNA_H-paniculata_contig12778.1744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12778.1744.1
Unique NamemRNA_H-paniculata_contig12778.1744.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: D7FYW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW4_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 9.330e-48
Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = 2
Query:  116 NVFAMAKGGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEADSSNG 433
            ++F +  GGLYL+HQ VG+AQY+  TFLPSQSCRKYLKLR QQ+V FRAACFCHK+VVDIA+VCSVCLSVFCEFSPVC+TCGTRAWPKK+     K       +NG
Sbjct:   10 SIFHVLPGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGRHKALAGTTVANG 115          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.350e-44
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = 2
Query:  125 AMAKGGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEADSSNG 433
            A   GGLYL+HQ VG+AQY+  TFLPSQSCRKYLKLR QQ+V FRAACFCHK+VVDIA+VCSVCLSVFCEFSPVC+TCGTRAWPKK+     K       +NG
Sbjct:  211 AYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALAGTTVANG 313          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA)

HSP 1 Score: 126 bits (316), Expect = 9.610e-32
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 2
Query:  125 AMAKGGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNT 391
            A   GG+Y   QE  + Q LLT  LPSQ+CRKYL+ + Q+TV FRAACFCH+++++IA+VCSVCLSVFCEFSP+C+TCGTRA PK + T
Sbjct:  197 ADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVPKLLTT 285          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A168N7M0_MUCCL (General transcription and DNA repair factor IIH subunit TFB4 n=2 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A168N7M0_MUCCL)

HSP 1 Score: 99.4 bits (246), Expect = 5.330e-23
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  137 GGLYLQHQE-VGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTR 367
            GG+Y++ +    + +YL+  FLP +  R YL L  Q  V FRAACFCHKK+VDI FVCSVCLS+FC++SPVCSTC T+
Sbjct:   35 GGVYVKMENRQALLEYLMMAFLPDRYSRNYLNLPSQDQVDFRAACFCHKKIVDIGFVCSVCLSIFCKWSPVCSTCKTK 112          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD)

HSP 1 Score: 102 bits (255), Expect = 1.350e-22
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  125 AMAKGGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRA--WPKKVNTATKKR 406
            A   GG+Y + +   G+ QYLL+ +LP  S RK LKL  Q +V FRA CFCHK+V+  AFVC VCLS+FCEF P+CSTCG R+   P K     KKR
Sbjct:  212 AYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKMQQQKKR 308          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.460e-22
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  125 AMAKGGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW--PKKVNTATKKRP 409
            A   GG+Y + +   G+ QYL++ +LP  S RK LKL  Q +V FRA CFCH++V+  A+VC VCLS+FCEF P+CSTCG R+   PKK N   KKRP
Sbjct:  198 AYLTGGIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKK-NGLMKKRP 294          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM)

HSP 1 Score: 102 bits (253), Expect = 2.070e-22
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  125 AMAKGGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW--PKKVNTATKKRPLEA 418
            A   GG+Y + +   G+ QYL++ +LP  S RK LKL  Q +V FRA CFCH++V+  A+VC VCLS+FCEF P+CSTCG R+   PKK N   KKRP  A
Sbjct:  199 AYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKK-NGVLKKRPRVA 298          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: F0WU60_9STRA (General transcription factor IIH subunit putative n=2 Tax=Albugo TaxID=65356 RepID=F0WU60_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.420e-22
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  137 GGLYLQHQEV-GIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW---PKKVNTATKKRP 409
            GG+Y + + + G+ QYL+T +LP  + RK L+   Q++V FRA CFCHKK V  AFVC VCLS+FC+F P+CSTCG R+    P+K+  AT KRP
Sbjct:  193 GGIYYKPRVIDGLLQYLITLYLPDPNMRKMLRFPSQESVDFRAMCFCHKKAVSTAFVCPVCLSLFCQFQPICSTCGVRSRLSIPRKL--ATPKRP 285          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: M4BTB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTB8_HYAAE)

HSP 1 Score: 101 bits (252), Expect = 2.940e-22
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  125 AMAKGGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEAD 421
            A   GG+Y + +   G+ QYL+  +LP  S RK LKL  Q +V FRA CFCH++V+  AFVC VCLS+FCEF P+CSTCG R+  +   T   K+ L  D
Sbjct:  200 AYLTGGIYYKPNDHSGLLQYLIAIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCEFRPICSTCGIRSHIQPKKTGMLKKHLRYD 299          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.360e-22
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  125 AMAKGGLYLQH-QEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW---PKKVNTATKKRP 409
            A   GG+Y +     G+ QYLL+ +LP  S RK LKL  Q +V FRA CFCHK+V+  AFVC VCLS+FCEF P+CSTCG R+     KK+    ++RP
Sbjct:  208 AYLTGGIYYKPIDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKLQQKKRQRP 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYW4_ECTSI9.330e-4869.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ72_9PHAE2.350e-4471.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZC01_9STRA9.610e-3262.92Putative general transcription factor IIH subunit ... [more]
A0A168N7M0_MUCCL5.330e-2357.69General transcription and DNA repair factor IIH su... [more]
K3WG36_GLOUD1.350e-2253.61Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A421GZV4_9STRA1.460e-2253.06Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GBC5_PHYRM2.070e-2252.48Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
F0WU60_9STRA2.420e-2252.63General transcription factor IIH subunit putative ... [more]
M4BTB8_HYAAE2.940e-2249.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A5D6XQC8_9STRA3.360e-2251.52Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12778contigH-paniculata_contig12778:4009..5274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue4.1e-37
Seed eggNOG ortholog2880.D7FYW4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGsCOG5242@1,KOG2487@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size664
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12778.1744.1prot_H-paniculata_contig12778.1744.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12778 4136..5064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.0190668-UTR-H-paniculata_contig12778:4008..41351622928999.0190668-UTR-H-paniculata_contig12778:4008..4135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12778 4009..4135 +
1691480696.3319201-UTR-H-paniculata_contig12778:4008..41351691480696.3319201-UTR-H-paniculata_contig12778:4008..4135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12778 4009..4135 +
1622928999.0791492-UTR-H-paniculata_contig12778:5064..52741622928999.0791492-UTR-H-paniculata_contig12778:5064..5274Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12778 5065..5274 +
1691480696.3611054-UTR-H-paniculata_contig12778:5064..52741691480696.3611054-UTR-H-paniculata_contig12778:5064..5274Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12778 5065..5274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.0368855-CDS-H-paniculata_contig12778:4135..43111622928999.0368855-CDS-H-paniculata_contig12778:4135..4311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12778 4136..4311 +
1691480696.3467321-CDS-H-paniculata_contig12778:4135..43111691480696.3467321-CDS-H-paniculata_contig12778:4135..4311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12778 4136..4311 +
1622928999.059372-CDS-H-paniculata_contig12778:4913..50641622928999.059372-CDS-H-paniculata_contig12778:4913..5064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12778 4914..5064 +
1691480696.3539279-CDS-H-paniculata_contig12778:4913..50641691480696.3539279-CDS-H-paniculata_contig12778:4913..5064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12778 4914..5064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12778.1744.1

>prot_H-paniculata_contig12778.1744.1 ID=prot_H-paniculata_contig12778.1744.1|Name=mRNA_H-paniculata_contig12778.1744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MAKGGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCH
KKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEADSS
NGHRHRHR*
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mRNA from alignment at H-paniculata_contig12778:4009..5274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12778.1744.1 ID=mRNA_H-paniculata_contig12778.1744.1|Name=mRNA_H-paniculata_contig12778.1744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig12778:4009..5274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATGTTCGAGGGTCTTTGATTGTTTCGTGAGAATTTGTACTCTCCTATA CTCATCTGGATATTTTTCTGCGTTGCTCTCACCCGATATTTTTTCCTTTC CTATTATTGCCATATAACGTTTTTGCGATGGCCAAAGGTGGATTGTACCT GCAACACCAGGAGGTGGGAATTGCGCAGTACCTGCTTACGACCTTCTTGC CGAGCCAAAGTTGCCGGAAGTACCTCAAGCTCCGCAAGCAACAGACCGTG AGCTTTAGGGCCGCGTGTTTTTGCCACAAGAAAGTGGTGGATATTGCTTT CGTGTGAGTGCCTCAATCTAGAAAGTAGTCGATGCTTCCTGTTTCTTCAT TTTCTCTCTGCTGTTGCTGCTATCGCCTACCGCACGTGCATCTTGTGGAC TTGAGCGCCTCGAAAACACTGGGAGACGACCGCCGTCACTCTCAACCGTA TTTGTGTCAGTACCCGATGTCCGTGTTGTTGTGGGTAACGGCAGTAAAAA GGACACTACCGTAGTCAAGGTTATCGTGGCACCAATTTTCACTGCTGTGT GCGGTACTGTTATAGGCCAGCAAGACAACAGGTGCACGACAAATAAAGCC TAAGTGAGTGCAGTGTGCACGACGAGTAAAGCCTAAGTGAGTGCAGTGTG CACGACGAGTAAAGCCTAAGTGAGTGCAGTGTGCACGACGAGTAAAGCCT AAGTGAGTGCAGTGTGCACTCGCTCGATGCGGACGTGGGCACCCGGTCTA TCTGCGCGCCTATGCCGACACCCCCATTTCGATTTTTCCCGCTCCCTCCC CTTTCTTCTCATGCCTTTTATTTTCCCCTGCTTGCCTGTTCTATTTGTGT CTGTTCCCTTCTCTTTGTTCTTTGGCGTGCTGGTTGTTTTGTATTGCCGG TGCAGATGTTCGGTGTGTTTGTCGGTGTTTTGCGAATTTTCCCCCGTGTG TTCGACGTGCGGCACGAGGGCTTGGCCGAAGAAGGTCAACACAGCCACGA AGAAACGGCCGTTGGAGGCCGACAGTAGCAACGGTCACCGTCACCGTCAC CGTTGAAAAAAAAGAGCACGGGCTGATCGGACATTTACACCATTCGCGGA TTTTGCAAAAGAGGCGTAATGTGATGACTTTTTTTGTTTGTTTGTAACAT TCGTATATCTTCGTGTTCTTTATGCAGGAGTATGCGCGACGTTTATGCAA TGATTGATTGAATTGGTTTTGATCTTTACCGATCTGCCAGGATCAATAAT CAACTGTCTCTCTTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig12778:4009..5274+

>mRNA_H-paniculata_contig12778.1744.1 ID=mRNA_H-paniculata_contig12778.1744.1|Name=mRNA_H-paniculata_contig12778.1744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig12778:4009..5274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAAGGTGGATTGTACCTGCAACACCAGGAGGTGGGAATTGCGCA
GTACCTGCTTACGACCTTCTTGCCGAGCCAAAGTTGCCGGAAGTACCTCA
AGCTCCGCAAGCAACAGACCGTGAGCTTTAGGGCCGCGTGTTTTTGCCAC
AAGAAAGTGGTGGATATTGCTTTCGTATGGCCAAAGGTGGATTGTACCTG
CAACACCAGGAGGTGGGAATTGCGCAGTACCTGCTTACGACCTTCTTGCC
GAGCCAAAGTTGCCGGAAGTACCTCAAGCTCCGCAAGCAACAGACCGTGA
GCTTTAGGGCCGCGTGTTTTTGCCACAAGAAAGTGGTGGATATTGCTTTC
GTATGTTCGGTGTGTTTGTCGGTGTTTTGCGAATTTTCCCCCGTGTGTTC
GACGTGCGGCACGAGGGCTTGGCCGAAGAAGGTCAACACAGCCACGAAGA
AACGGCCGTTGGAGGCCGACAGTAGCAACGGTCACCGTCACCGTCACCGT
TGAATGTTCGGTGTGTTTGTCGGTGTTTTGCGAATTTTCCCCCGTGTGTT
CGACGTGCGGCACGAGGGCTTGGCCGAAGAAGGTCAACACAGCCACGAAG
AAACGGCCGTTGGAGGCCGACAGTAGCAACGGTCACCGTCACCGTCACCG
TTGA
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