prot_H-paniculata_contig12778.1744.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12778.1744.1
Unique Nameprot_H-paniculata_contig12778.1744.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length109
Homology
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: D7FYW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW4_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.430e-48
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0
Query:    4 GGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEADSSNG 102
            GGLYL+HQ VG+AQY+  TFLPSQSCRKYLKLR QQ+V FRAACFCHK+VVDIA+VCSVCLSVFCEFSPVC+TCGTRAWPKK+     K       +NG
Sbjct:   17 GGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGRHKALAGTTVANG 115          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 7.450e-46
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0
Query:    4 GGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEADSSNG 102
            GGLYL+HQ VG+AQY+  TFLPSQSCRKYLKLR QQ+V FRAACFCHK+VVDIA+VCSVCLSVFCEFSPVC+TCGTRAWPKK+     K       +NG
Sbjct:  215 GGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALAGTTVANG 313          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.730e-33
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 0
Query:    4 GGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNT 88
            GG+Y   QE  + Q LLT  LPSQ+CRKYL+ + Q+TV FRAACFCH+++++IA+VCSVCLSVFCEFSP+C+TCGTRA PK + T
Sbjct:  201 GGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVPKLLTT 285          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A168N7M0_MUCCL (General transcription and DNA repair factor IIH subunit TFB4 n=2 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A168N7M0_MUCCL)

HSP 1 Score: 99.4 bits (246), Expect = 1.470e-24
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 0
Query:    4 GGLYLQHQE-VGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTR 80
            GG+Y++ +    + +YL+  FLP +  R YL L  Q  V FRAACFCHKK+VDI FVCSVCLS+FC++SPVCSTC T+
Sbjct:   35 GGVYVKMENRQALLEYLMMAFLPDRYSRNYLNLPSQDQVDFRAACFCHKKIVDIGFVCSVCLSIFCKWSPVCSTCKTK 112          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: F0WU60_9STRA (General transcription factor IIH subunit putative n=2 Tax=Albugo TaxID=65356 RepID=F0WU60_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.410e-24
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    4 GGLYLQHQEV-GIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW---PKKVNTATKKRP 94
            GG+Y + + + G+ QYL+T +LP  + RK L+   Q++V FRA CFCHKK V  AFVC VCLS+FC+F P+CSTCG R+    P+K+  AT KRP
Sbjct:  193 GGIYYKPRVIDGLLQYLITLYLPDPNMRKMLRFPSQESVDFRAMCFCHKKAVSTAFVCPVCLSLFCQFQPICSTCGVRSRLSIPRKL--ATPKRP 285          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD)

HSP 1 Score: 102 bits (253), Expect = 6.860e-24
Identity = 51/93 (54.84%), Postives = 63/93 (67.74%), Query Frame = 0
Query:    4 GGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRA--WPKKVNTATKKR 93
            GG+Y + +   G+ QYLL+ +LP  S RK LKL  Q +V FRA CFCHK+V+  AFVC VCLS+FCEF P+CSTCG R+   P K     KKR
Sbjct:  216 GGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKMQQQKKR 308          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.500e-24
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 0
Query:    4 GGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW--PKKVNTATKKRP 94
            GG+Y + +   G+ QYL++ +LP  S RK LKL  Q +V FRA CFCH++V+  A+VC VCLS+FCEF P+CSTCG R+   PKK N   KKRP
Sbjct:  202 GGIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKK-NGLMKKRP 294          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM)

HSP 1 Score: 101 bits (251), Expect = 1.070e-23
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 0
Query:    4 GGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW--PKKVNTATKKRPLEA 97
            GG+Y + +   G+ QYL++ +LP  S RK LKL  Q +V FRA CFCH++V+  A+VC VCLS+FCEF P+CSTCG R+   PKK N   KKRP  A
Sbjct:  203 GGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKK-NGVLKKRPRVA 298          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: M4BTB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTB8_HYAAE)

HSP 1 Score: 100 bits (250), Expect = 1.530e-23
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 0
Query:    4 GGLYLQ-HQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEAD 98
            GG+Y + +   G+ QYL+  +LP  S RK LKL  Q +V FRA CFCH++V+  AFVC VCLS+FCEF P+CSTCG R+  +   T   K+ L  D
Sbjct:  204 GGIYYKPNDHSGLLQYLIAIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCEFRPICSTCGIRSHIQPKKTGMLKKHLRYD 299          
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.740e-23
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = 0
Query:    4 GGLYLQH-QEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCHKKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAW---PKKVNTATKKRP 94
            GG+Y +     G+ QYLL+ +LP  S RK LKL  Q +V FRA CFCHK+V+  AFVC VCLS+FCEF P+CSTCG R+     KK+    ++RP
Sbjct:  212 GGIYYKPIDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKLQQKKRQRP 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12778.1744.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYW4_ECTSI2.430e-4873.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ72_9PHAE7.450e-4673.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZC01_9STRA2.730e-3364.71Putative general transcription factor IIH subunit ... [more]
A0A168N7M0_MUCCL1.470e-2457.69General transcription and DNA repair factor IIH su... [more]
F0WU60_9STRA6.410e-2452.63General transcription factor IIH subunit putative ... [more]
K3WG36_GLOUD6.860e-2454.84Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A421GZV4_9STRA7.500e-2454.26Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GBC5_PHYRM1.070e-2353.61Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
M4BTB8_HYAAE1.530e-2350.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A5D6XQC8_9STRA1.740e-2352.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004600TFIIH subunit Tfb4/GTF2H3PFAMPF03850Tfb4coord: 3..78
e-value: 9.1E-28
score: 97.5
IPR004600TFIIH subunit Tfb4/GTF2H3PANTHERPTHR12831TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATEDcoord: 4..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12778contigH-paniculata_contig12778:4136..5064 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12778.1744.1mRNA_H-paniculata_contig12778.1744.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12778 4009..5274 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12778.1744.1 ID=prot_H-paniculata_contig12778.1744.1|Name=mRNA_H-paniculata_contig12778.1744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MAKGGLYLQHQEVGIAQYLLTTFLPSQSCRKYLKLRKQQTVSFRAACFCH
KKVVDIAFVCSVCLSVFCEFSPVCSTCGTRAWPKKVNTATKKRPLEADSS
NGHRHRHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004600TFIIH_Tfb4/GTF2H3