mRNA_H-paniculata_contig9651.17344.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9651.17344.1
Unique NamemRNA_H-paniculata_contig9651.17344.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: D7G7K6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K6_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 2.180e-111
Identity = 169/201 (84.08%), Postives = 187/201 (93.03%), Query Frame = 1 
Query:    1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQLLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADK 603
            MVKHNNV+PN HFHKKWQRRVRTWFDQPAKKKARRQARQ KAAKMAPRPTQLLRP VHCPTIKYNSKVRLGRGFN++ELKEAG+SKKTALTIGIAVDHRRT+KSE +F +NVARLKEYRANLI+FPRG K+ PKKGDSSL++Q +ATQVTGVTMPLVKA KPVEF+ VTAEM  T+LHSERR+ARNE K+AGIR+RQK +K
Sbjct:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSLHSERRVARNEFKLAGIRIRQKEEK 201
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A836C9T6_9STRA (60S ribosomal protein L13 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T6_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.360e-78
Identity = 129/204 (63.24%), Postives = 154/204 (75.49%), Query Frame = 1 
Query:    1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQLLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAA 612
            MVKHNNV+PN HFHKKWQ RV+TWFDQP KKKARR  R  KAA +APRPTQLLRP VHCPTIKYN KVRLGRGF + ELKEAG+S+K A TIGI+VDHRRT++S AT Q+NVARLKEY++ LI+FPR     PK GD++    A+A QVTG  MPL KA   V F  VT EMK    +   R+AR+++++ GIR +Q A+K  A
Sbjct:    1 MVKHNNVIPNGHFHKKWQTRVKTWFDQPMKKKARRMRRAAKAAAVAPRPTQLLRPAVHCPTIKYNMKVRLGRGFTLAELKEAGISRKVARTIGISVDHRRTNRSLATMQNNVARLKEYQSKLIIFPRRSNAKPKAGDAAPGDTAAAAQVTGAVMPLTKAVPAVAFAAVTDEMKAFKAYEALRVARSDARLVGIRKKQAAEKKDA 204
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: K8Z7Z7_NANGC (Large subunit ribosomal protein L13e n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7Z7_NANGC)

HSP 1 Score: 238 bits (606), Expect = 4.530e-73
Identity = 122/194 (62.89%), Postives = 145/194 (74.74%), Query Frame = 1 
Query:    1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQLLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIR 582
            MV+HNNV+PNQHFHK WQ RV+TWF QPAKKKARR AR+ KAA +APRPTQLLRP VH PT +YN K RLGRGF M ELKEAGL+KK A ++GIAVDHRRT+ S  + Q+NV RLKEY++ LIVFP G    PK GDSS  +  +A Q TG  +PL   KK VEFV V+ E+K    H+  R+ARN+ K+ GIR
Sbjct:    1 MVRHNNVIPNQHFHKDWQTRVKTWFVQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEAGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIR 194
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A2D4BG90_PYTIN (60S ribosomal protein L13 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG90_PYTIN)

HSP 1 Score: 233 bits (594), Expect = 2.850e-71
Identity = 118/205 (57.56%), Postives = 157/205 (76.59%), Query Frame = 1 
Query:    1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAA 612
            MVKHNNV+PN HFHK WQRR++TWFDQ AKKKARR  R+ KAA +APRP   LLRP VHCPT+KY SKVR G+GF+++ELKEAG+SKK AL+IGIAVD+RRT+KS  + Q+NV RLK Y+A L++FPR   N PK GDS+ ++ A+A QVTG   P+ +     E   +T EMK T+++++ R+AR ++++AG + ++ ADK AA
Sbjct:    1 MVKHNNVIPNGHFHKDWQRRIKTWFDQAAKKKARRLRRKEKAAAIAPRPAAGLLRPAVHCPTVKYASKVRAGKGFSLEELKEAGISKKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKAKLVIFPRKSNNKPKHGDSTPEETANAVQVTGPIFPIARKTVKSESAVITEEMKNTSVYAQLRVARADARIAGKQKKRLADKAAA 205
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A1V9ZEJ6_9STRA (60S ribosomal protein L13 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZEJ6_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.670e-69
Identity = 113/205 (55.12%), Postives = 154/205 (75.12%), Query Frame = 1 
Query:    1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAA 612
            MVKHNNV+PN HFHK WQ R++TWFDQ +KKK+RR  R+ KAA +APRP   LLRP VHCPT+KY SKVR GRGF +DELKEAG+S+K ALTIGIAVD+RRT+KS  + Q+NV RLK Y++ L+VFPR   + PK GDS+L++  +A Q TG  +P+ +  K +    +T +MK T++ +  R+AR ++++ G+R ++ A+K AA
Sbjct:    1 MVKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKTYKSKLVVFPRKRASKPKHGDSTLEETKNAVQHTGAILPIARVSKDIATAKITDDMKKTSVVNTLRLARADARLVGLRKKKAAEKAAA 205
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A7R9WAC9_9STRA (60S ribosomal protein L13 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WAC9_9STRA)

HSP 1 Score: 227 bits (578), Expect = 7.300e-69
Identity = 114/198 (57.58%), Postives = 147/198 (74.24%), Query Frame = 1 
Query:    1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQ 591
            MVKHNNV+PNQHFHK+WQ RV+TWFDQPAKKKARR AR+ KAA +APRP   LLRP V CPT +YN+KVR GRGF ++ELK AG+SK+ A TIGIAVDHRR++KS AT Q NV RL  Y+A L+VFPRG    PK GD+S+++ ++ATQ+TG   P+       EFV +T ++K  N +   RI R   ++ G+R+++
Sbjct:    1 MVKHNNVVPNQHFHKQWQNRVKTWFDQPAKKKARRAARKAKAAAIAPRPAAGLLRPAVRCPTQRYNTKVRAGRGFTLEELKTAGISKRVARTIGIAVDHRRSNKSTATLQENVQRLNAYKAKLVVFPRGSNAKPKTGDASVEETSAATQLTGPLFPITAKPVSTEFVALTDDLKAKNAYRTLRIERCNRRMNGLRIKR 198
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A7S2UYA0_9STRA (60S ribosomal protein L13 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYA0_9STRA)

HSP 1 Score: 223 bits (568), Expect = 2.070e-67
Identity = 118/202 (58.42%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:    1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADK 603
            MVKHNNV+PN H HKKWQRRV+TWFDQPAKKK RR AR+ KAAK+APRP   LLRP VHC T KY+SK RLGRGF++ ELKEAG+ KK A TIGIAVDHRRT+KS    Q+N+ARL E++A L+VFPR     PK GDS+ ++ + ATQ+TG  +P+VK  + +E   VT EMK     +  R+A+++++V G+R  + A K
Sbjct:    1 MVKHNNVVPNVHCHKKWQRRVKTWFDQPAKKKNRRLARKAKAAKLAPRPVSGLLRPVVHCSTQKYSSKTRLGRGFSLAELKEAGIPKKVARTIGIAVDHRRTNKSVEAMQANIARLAEFKARLVVFPRKSNQKPKNGDSAPEETSQATQLTGPILPIVKTDE-LETAAVTDEMKNFKAFTSLRLAKSDARVLGLRASRAAAK 201
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A1V9ZTH1_9STRA (60S ribosomal protein L13 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZTH1_9STRA)

HSP 1 Score: 220 bits (560), Expect = 3.590e-66
Identity = 112/205 (54.63%), Postives = 147/205 (71.71%), Query Frame = 1 
Query:    1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAA 612
            MVKHNNV+PN HFHK WQ R++TWFDQ AKKK+RR  R+ KAA +APRP   LLRP VHCPT+KY SKVR GRGF +DELKEAG+S+K ALTIGIAVD+RRT+KS  + Q+NV RLK Y++ L+VFPR   + PK GD+S ++  S  Q  G   P+ +A   V    +T EMK  ++    R+AR ++++ G+R ++ A+K  A
Sbjct:    1 MVKHNNVIPNGHFHKDWQNRIKTWFDQAAKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKAYKSKLVVFPRKRISKPKNGDASAEELKSVVQHKGALFPIARASTEVATAKITEEMKNDSVVKTLRLARADARLVGLRKKKAAEKAEA 205
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A024TY88_9STRA (60S ribosomal protein L13 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TY88_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.940e-65
Identity = 108/203 (53.20%), Postives = 151/203 (74.38%), Query Frame = 1 
Query:    4 VKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDA 609
            +KHNNV+PN HFHK WQ R++TWFDQ +KKK+RR  R+ KAA +APRP   LLRP VHCPTIKY SKVR GRGF +DELKEAG+S+K ALTIG++VD+RRT+KS  + Q+NV RLK Y++ L++FPR   + PK GDS +++  +ATQ+ G  +P+ +  K V    +T E+K  ++    R+AR ++++ G+R ++KAD+ A
Sbjct:    1 MKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGRGFTLDELKEAGISRKQALTIGVSVDYRRTNKSVESLQANVQRLKTYKSKLVLFPRKRASKPKAGDSKVEETKNATQLIGAVLPIARPSKEVPTAKITEELKNNSVVKTLRLARADARLVGLR-KKKADEKA 202
[Close]
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: H3G8S1_PHYRM (60S ribosomal protein L13 n=5 Tax=Peronosporaceae TaxID=4777 RepID=H3G8S1_PHYRM)

HSP 1 Score: 216 bits (549), Expect = 1.530e-64
Identity = 110/206 (53.40%), Postives = 148/206 (71.84%), Query Frame = 1 
Query:    1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAAK 615
            MVKHNNV+PN HFHK W+ R++TWFDQ AKKK RR AR+ KAA +APRP   LLRP VHCPTIKY SKVR G+GF ++ELKEAG+++K A++IGIAVD RRT+KS  + Q+NV RLK Y+A L+VFPR   N PK GDSS ++  +A Q TG  +P+ ++        +T EMK  ++ ++ R+AR + ++ G + ++ ADK   K
Sbjct:    1 MVKHNNVIPNGHFHKYWESRIKTWFDQAAKKKTRRLARKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGKGFTLEELKEAGINRKQAISIGIAVDFRRTNKSVESLQANVHRLKAYKAKLVVFPRKSVNKPKNGDSSPEETKNAVQYTGAILPITRSSVKSTTAVITPEMKEKSVFTQLRVARADKRIFGKQAKRLADKKEKK 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7K6_ECTSI2.180e-11184.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9T6_9STRA1.360e-7863.2460S ribosomal protein L13 n=2 Tax=Tribonema minus ... [more]
K8Z7Z7_NANGC4.530e-7362.89Large subunit ribosomal protein L13e n=3 Tax=Monod... [more]
A0A2D4BG90_PYTIN2.850e-7157.5660S ribosomal protein L13 n=1 Tax=Pythium insidios... [more]
A0A1V9ZEJ6_9STRA3.670e-6955.1260S ribosomal protein L13 n=1 Tax=Thraustotheca cl... [more]
A0A7R9WAC9_9STRA7.300e-6957.5860S ribosomal protein L13 n=1 Tax=Pseudictyota dub... [more]
A0A7S2UYA0_9STRA2.070e-6758.4260S ribosomal protein L13 n=1 Tax=Fibrocapsa japon... [more]
A0A1V9ZTH1_9STRA3.590e-6654.6360S ribosomal protein L13 n=3 Tax=Saprolegniaceae ... [more]
A0A024TY88_9STRA1.940e-6553.2060S ribosomal protein L13 n=4 Tax=Aphanomyces TaxI... [more]
H3G8S1_PHYRM1.530e-6453.4060S ribosomal protein L13 n=5 Tax=Peronosporaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9651contigH-paniculata_contig9651:3114..8365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.6
Seed ortholog evalue2.1e-90
Seed eggNOG ortholog2880.D7G7K6
Preferred nameRPL13
KEGG koko:K02873,ko:K10755
KEGG Pathwayko03010,ko03030,ko03420,ko03430,map03010,map03030,map03420,map03430
KEGG ModuleM00177,M00179,M00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009506,GO:0009719,GO:0009725,GO:0009735,GO:0009986,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016236,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0030312,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0055044,GO:0061919,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG4352@1,KOG3295@2759
Ec32 ortholog descriptionRibosomal protein L13e
Ec32 orthologEc-22_002060.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03032,ko03036,ko03400
Exons7
Model size1362
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9651.17344.1prot_H-paniculata_contig9651.17344.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9651 3114..7621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.5329785-CDS-H-paniculata_contig9651:3113..31941622931197.5329785-CDS-H-paniculata_contig9651:3113..3194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 3114..3194 +
1691481634.1346595-CDS-H-paniculata_contig9651:3113..31941691481634.1346595-CDS-H-paniculata_contig9651:3113..3194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 3114..3194 +
1622931197.5488546-CDS-H-paniculata_contig9651:4296..44041622931197.5488546-CDS-H-paniculata_contig9651:4296..4404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 4297..4404 +
1691481634.1507688-CDS-H-paniculata_contig9651:4296..44041691481634.1507688-CDS-H-paniculata_contig9651:4296..4404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 4297..4404 +
1622931197.5607426-CDS-H-paniculata_contig9651:5171..52221622931197.5607426-CDS-H-paniculata_contig9651:5171..5222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 5172..5222 +
1691481634.1622314-CDS-H-paniculata_contig9651:5171..52221691481634.1622314-CDS-H-paniculata_contig9651:5171..5222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 5172..5222 +
1622931197.5751972-CDS-H-paniculata_contig9651:5764..58361622931197.5751972-CDS-H-paniculata_contig9651:5764..5836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 5765..5836 +
1691481634.1751232-CDS-H-paniculata_contig9651:5764..58361691481634.1751232-CDS-H-paniculata_contig9651:5764..5836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 5765..5836 +
1622931197.592142-CDS-H-paniculata_contig9651:6294..64261622931197.592142-CDS-H-paniculata_contig9651:6294..6426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 6295..6426 +
1691481634.1846006-CDS-H-paniculata_contig9651:6294..64261691481634.1846006-CDS-H-paniculata_contig9651:6294..6426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 6295..6426 +
1622931197.6089206-CDS-H-paniculata_contig9651:7127..71931622931197.6089206-CDS-H-paniculata_contig9651:7127..7193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 7128..7193 +
1691481634.1939669-CDS-H-paniculata_contig9651:7127..71931691481634.1939669-CDS-H-paniculata_contig9651:7127..7193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 7128..7193 +
1622931197.6269872-CDS-H-paniculata_contig9651:7513..76211622931197.6269872-CDS-H-paniculata_contig9651:7513..7621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 7514..7621 +
1691481634.2033064-CDS-H-paniculata_contig9651:7513..76211691481634.2033064-CDS-H-paniculata_contig9651:7513..7621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9651 7514..7621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.6427608-UTR-H-paniculata_contig9651:7621..83651622931197.6427608-UTR-H-paniculata_contig9651:7621..8365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 7622..8365 +
1691481634.2146094-UTR-H-paniculata_contig9651:7621..83651691481634.2146094-UTR-H-paniculata_contig9651:7621..8365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9651 7622..8365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9651.17344.1

>prot_H-paniculata_contig9651.17344.1 ID=prot_H-paniculata_contig9651.17344.1|Name=mRNA_H-paniculata_contig9651.17344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPT
QLLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRR
TSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVT
GVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKAD
KDAAK*
back to top

mRNA from alignment at H-paniculata_contig9651:3114..8365+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9651.17344.1 ID=mRNA_H-paniculata_contig9651.17344.1|Name=mRNA_H-paniculata_contig9651.17344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5252bp|location=Sequence derived from alignment at H-paniculata_contig9651:3114..8365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGCACAACAACGTGCTGCCTAACCAGCATTTCCACAAGAAATG
GCAGAGGAGGGTCCGGACATGGTTCGACCAGGTACGCAAGCGTTCTCCAA
GAGTACTATTCAGGTCTACCGTGCTGCATTGTACACAGACTGCTTTTCAT
GGCAGTGGGGAAGGCTAGTGGACAAATCAACTGGGGTAGCCAGGGTGACC
TATACTCATCGGTGGCATACTGTTGGACATAGCACAATGTCCTGACGTTG
ACACTGCAACCGTTTTATTATGTCTCGACTGTTGTAGTGCGTGGATGGAT
GTGTGACATAGAAGCGCTCTGCCATCAAATTGAGCAGACGCGGTCGAAAC
CACCTGTTTCTGTATCTTCTATACCACCCCTTATCTGTGTACCTACCAAA
TCTTGAGCATCGGCTTCACTACTGAGGGAAATGCGTTTTCTTGTCCCCTT
GTGGGATGAGGGGTAATCATGATGCTGTCGTTGCTGATATAGTTTCAAAA
TTTGTACTTTAATGAGAGCTGTCGCGGGTCACTCTCTTGGCTCATTATAT
TTCACCCGTCCGATGAAGTAGGAGGCGATTCCATACACTGCACGGACTTT
TCATCACGTTACAAGCACGTCGCAACGTGACATTCACCTCGAAAAGTCAT
CATACTTGGCATGATGGATAAACTTGCTTCTGTCAAGCCACTGGAAGCTG
TTGTCTTTGTTCTAGCTCATCTAAGCGATAGAAAACGAAGATTTGACGAT
GTCCTTGGGCTTGTTGAAACTGAAAAAAGGTACTTGAACGTTCAAGTCGT
CGCAGCATCTTCCCGAACTGCGAGTACTTGATCCGGATTTTGAGTGTTCA
CTTACACCGTTTCCAATGTTACCGTCGATTCACCTGGCATCTACAGCCTG
TGTATGCTTCACGCGGTCACCCTCTCAGCAAAATTTCGTCGAAGTTTAAT
TGAGAAGAAAAGAAGGCGTTTTCATGGGTGTTAGGAGTGTCTGCAGAAGA
TCATTTTGACTGTTATCTTCGAGTCCACTTTATTGTAAACGTGACCAGTC
CAGTTTGCTCGCTTGACAAAAGGATTCAATGAATGTGGTCGAGTTACTCT
CACAAGTTGACCCTTTCTTTGATCCTGTTCTTAATGTTGACGTATTCACG
ATCTGATCACTCGTCTATTCTCTTGTTTTGTAGCCAGCGAAAAAGAAGGC
GCGTCGCCAAGCGCGGCAGCTGAAAGCTGCCAAGATGGCGCCACGCCCGA
CACAGCTTCTGCGACCCGGAGTGCACTGCCCCACCATCAAGGTGTGTGTT
CATTCTGGGTGGGTCCCCAGCGCGTTGTACTATAAGACTGGTGTCGCTAG
TGTGATATTCACCGCAGTTCTGTAGCCAATAATGAGGGTTTTTTTTAACA
AGATTACAGTGCCACCATAATATGAACACGAGTGCAGAGGTAGATGGCCA
CATTACATGTTAATACTCGGAATAGAGTCATGTTTGACCGCTGCCATATT
CAGATGACTGATGAAGCGTCCCATGTATCATCTATTGAATCCACAGCGTA
AACTGCTTCAAAAACAAAAGTTTCGGGACCTGGCGTGGTCGAGGGAGTTA
TTTTGTCACGTCTGTGCTTTCGACTTGACGGGTGTACACGGCTTTGAAAT
CTCTTGGACTTGATGCACCCGCGTTTAGTCCCGCGTGCAGAGATTTTACA
CACAGCGCTGTGAAGGCAGTCCGCACTGAAAGTCTGGGACCAGGGACAGG
ATGATGGTTTCATGATGCGATGGGAAACATGTTGATTCACACACTTGTAG
GAAGACTTCTGCCCCTGAGAGTCGTATTTTGAATAAGACGGAGATGAGTA
TGGGGCATTTGGAAACTGCGAATAATCGGAAGTCTTGCCCCTTATCTGAT
TAGTGAGCCTACTCGACATTCCCGTCTTCGTACCCGCCGTCCACGCTCGA
TGGTTTCTGGCTACGCGTCACTGACCCCACATTTGCTCCCAAATCTCTTG
TCACTTTCTCGCGTCCGTGAAATCTTTTGGTGCGCGATGACTGTCCTATG
GAGTACAGTACAACTCGAAGGTCCGCCTTGGCCGCGGATTCAACATGGAT
GAGCTCAAGGTCCGTATGTCTAGCTTGGAATGGGTACCTCTTAAGATTTC
GCAGTGGGTGATGGTTTATTCTTTCTAGTGAACACGTGAACCATGAAACA
ACTCGTTCATGGTTGGACATTATTTTGTTCCGAAGGGGTGATGTTGGGGT
TCCCAGACTTTTTTCAAATATCTCCCACGCGGAGGCTTCAGCATTTATCG
GTTTTGCGCTCTTATCGCACGATACGCTACTCTACACGAATATCCGAACT
TGGTGTAATTTGCTTCTCTTTGATGGCAATTTCTTGTTCTTTTGTCCATT
TGTGCTGCGAGGTATTTCATGTAATCCTGCGACCGGAGTATGGCGTAATA
AAAGGTTAATCCTCACTGTCATCGTCGCCATTTGCAATGACGTACTTAGT
TGTTCATGTACTCAAGACTACTGTCGATAATAAATAAAAATCGAAGCAGC
TGTTCTAAACCTGTTAGCCTGTTTCATATAACATCACCTTCGCAGCACTT
CCGTTTTACACAATCTTCGACACTTTCTTCTCATCAAATTGCTCCTGACA
GGAGGCAGGTCTCTCCAAGAAGACGGCGCTTACTATTGGTATCGCAGTTG
ACCACCGCCGCACCAGCAAGTCGGTAAGTAATATGCCGGCGTCATAGTGT
GTGGCTTGAATGAAACCACAGCATGCACACGTCGAGGAGTCAAGATGTTG
GACGGAGCAAATTTGGATGGGTGCGGTCGGAGAAGTGGATATGTTGTATT
TCCGCCATATGGTGAAAAGCATGGCATTGCTCCTCGGGAAATCGCTTTCG
AATACTTTTCTTGTAATCTTTATTTAGTATGAGGTACATATATTTTCGTC
ATACCAAGATCATTTGGAGACGAAAGATGTGTCGCGTAGGTTTATTCTCG
ATTTCTTATGTAACGAGGTGGTAGCGTGGAGAAACTCGGGTGGCTTCTGT
TGAACATATGAGGGAAAATTTGCCATTTCGAAGCTAAACCAGCATCGCCC
ATCCATTCTTTTGAGGAACTGTCTAGTGTGCGGAACTAGTTTGACATTTG
TGCGTACGGTAAAAAAATGGAAAAATCACAGGAGGCGACCTTCCAAAGCA
ACGTCGCGCGACTGAAGGAGTACCGTGCGAACCTCATTGTCTTCCCCCGC
GGGCCGAAGAACGACCCGAAGAAGGGAGACAGCTCGCTCGACCAGCAGGC
GTCCGCCACTCAGGTACGGCTCATCCGGAAATATTTTCCGATGATATTTG
CTTGGTAATATACTGTACCCTTCGACAATCTTTCATCTCGTGTCATGGAT
ACCAAGAAACAGCTTGGGCACATATTTTGTAGAATCAATCGGTGTCTCCC
TATCGGTCGTATCTCTGAGAACAAATAGTTGCGTTGGTCAACATGATCAC
AGGTTCACTAACCACTTTACTCTCGAGGGGTCATGTTTTGATAGCTGATG
GACTCGAAGAGAGCCAAGTCGAGACATGACGTGAAACCCGACGTCAACTG
TTCACTCCGCTGTGTGAACAACGTTGACCGATGTCCCAAGAATACGGTAG
GTATTTGCTCATTTGTTTAATATTTCCTTGATGTTTCCATCGCGTCCGTA
ATCCAGTATGTAATCTAGGTAACATTCTTTTCTACAATTGTAGTGTCCAG
ATGGATGTATTCTCTTCAGTTTCGCAAACTTATAATTTGGGTTGTGAAAT
ACTTGGTCAAAAAGAGGTGTGGGGGAAGGATTGTTGCACGCAGGAGTTCT
CTATAACATACTCGGGTGTGATGAACTAGATTCTTGAGAATATCCATGAA
TGAATTGGCTGATCTCAGGTACTCCGGGGAGAGGCATGAGGGCGTCAGCT
CAAGATTAAATCATGTGCATTAAATTGACTTTTTTTTTTCTTGCAAATGT
TTTTTTATATCAAGGTCACCGGCGTCACGATGCCGCTTGTGAAGGCGAAG
AAGCCCGTCGAATTCGTGGATGTCACCGCGGTAAGTGGAAGTGTGACGGA
TAATTCGAAACCAATGAGGGATAGTTTCACCGTTTGTTGGTCTTCTGTTG
TCTCCCAAATTATGCAAGAAACGCCGTTGTCCATGCACCAATATGAGTAG
GAAATTTTCCTCTAAATTGAGCATACGTTAACGTGTACGTGGTTTTCAGT
AGTGGATTTGTTGGGCGTTGGGGCGCGCGTTCTGCGAGTCGCTTGTTGAA
CCATGTGAAGGGTGGTCCTTGGTGTAGTAAGCCAATTCGAAGCTGGGAAC
GCCTTGGAACAAACGATCGTACCTGCCCATGGTTTTGATGTGTCGTGCAG
GAGATGAAGGGCACTAACCTTCACAGTGAGAGGCGCATCGCCCGTAACGA
AAGCAAGGTGGCAGGCATCCGTCTTCGTCAAAAGGCCGACAAGGATGCGG
CCAAGTAAATCGAGAAAGAGTCAAGCTGCGAGAGTCTTCTCGGCCGTCGG
AAATGGATGTCGATGATTCTGCGGTGTTTGCGGACAGCACTGACGCAGGC
TGCTGTACAATACCGCGCAGTCGTCTAGCTTTTCGATGGCTGTTGAAGCT
TTTTGCACCCGTGTTATCGTGACAAGGGAAGAACTGTGCTTGAGGGCGAG
GCTGGACTATTTCAGGGCACTAACGAAAAATGAAGAAAATAAATCGAAAA
ATAACACAAAGTGGACTGGGGATGTGTGAGAACCGACGTACATGTGGGAT
GTGGTGTGGATCACTGATGCTGGGATGGACCATGATGGCGTTTCCTTTTC
ACGAAAGTTCGTCCATGAGCCATTACCGTTGACCTATTTACTCCCATGTG
AATTTCATCTCTAAACTGAATGAAAACTTCGAACGCGAGACATACGGATG
ACGGGGATGTGCGCATATCACATGGAACGTTTCATATTAAGAACACGTGA
TGGGTAAAATTTAATGATTTCGGAGGGTGGGGGAGGTGAAGACGGTACCT
CGGTCGAAACGGAAATTTGTTGTGTATGTCGTGGATATTTTGAAAACCCG
ACACATGTGTTCTTCGCTCTCACCACCTGGAGAAAAAGAAAATGTACCTC
GAGAGCATGATTATGAAGTGAATGGGTTAGAACTTACCGTAACCAATATG
TCGTCACCCGTTTCAATTTCAAGAAATAATAAAATTCACGCAATTTGGGA
AG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9651:3114..8365+

>mRNA_H-paniculata_contig9651.17344.1 ID=mRNA_H-paniculata_contig9651.17344.1|Name=mRNA_H-paniculata_contig9651.17344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig9651:3114..8365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGCACAACAACGTGCTGCCTAACCAGCATTTCCACAAGAAATG
GCAGAGGAGGGTCCGGACATGGTTCGACCAGATGGTGAAGCACAACAACG
TGCTGCCTAACCAGCATTTCCACAAGAAATGGCAGAGGAGGGTCCGGACA
TGGTTCGACCAGCCAGCGAAAAAGAAGGCGCGTCGCCAAGCGCGGCAGCT
GAAAGCTGCCAAGATGGCGCCACGCCCGACACAGCTTCTGCGACCCGGAG
TGCACTGCCCCACCATCAAGCCAGCGAAAAAGAAGGCGCGTCGCCAAGCG
CGGCAGCTGAAAGCTGCCAAGATGGCGCCACGCCCGACACAGCTTCTGCG
ACCCGGAGTGCACTGCCCCACCATCAAGTACAACTCGAAGGTCCGCCTTG
GCCGCGGATTCAACATGGATGAGCTCAAGTACAACTCGAAGGTCCGCCTT
GGCCGCGGATTCAACATGGATGAGCTCAAGGAGGCAGGTCTCTCCAAGAA
GACGGCGCTTACTATTGGTATCGCAGTTGACCACCGCCGCACCAGCAAGT
CGGAGGCAGGTCTCTCCAAGAAGACGGCGCTTACTATTGGTATCGCAGTT
GACCACCGCCGCACCAGCAAGTCGGAGGCGACCTTCCAAAGCAACGTCGC
GCGACTGAAGGAGTACCGTGCGAACCTCATTGTCTTCCCCCGCGGGCCGA
AGAACGACCCGAAGAAGGGAGACAGCTCGCTCGACCAGCAGGCGTCCGCC
ACTCAGGAGGCGACCTTCCAAAGCAACGTCGCGCGACTGAAGGAGTACCG
TGCGAACCTCATTGTCTTCCCCCGCGGGCCGAAGAACGACCCGAAGAAGG
GAGACAGCTCGCTCGACCAGCAGGCGTCCGCCACTCAGGTCACCGGCGTC
ACGATGCCGCTTGTGAAGGCGAAGAAGCCCGTCGAATTCGTGGATGTCAC
CGCGGTCACCGGCGTCACGATGCCGCTTGTGAAGGCGAAGAAGCCCGTCG
AATTCGTGGATGTCACCGCGGAGATGAAGGGCACTAACCTTCACAGTGAG
AGGCGCATCGCCCGTAACGAAAGCAAGGTGGCAGGCATCCGTCTTCGTCA
AAAGGCCGACAAGGATGCGGCCAAGTAAGAGATGAAGGGCACTAACCTTC
ACAGTGAGAGGCGCATCGCCCGTAACGAAAGCAAGGTGGCAGGCATCCGT
CTTCGTCAAAAGGCCGACAAGGATGCGGCCAAGTAA
back to top