Homology
BLAST of mRNA_H-paniculata_contig9647.17337.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE) HSP 1 Score: 147 bits (371), Expect = 5.910e-36 Identity = 79/162 (48.77%), Postives = 93/162 (57.41%), Query Frame = 1 Query: 10 RSVCRVRLRGLVPPPAVRLLVEAAGAMAAG-------DNSGGE----------------ISDDNGVVVDGCSWGSVTAWPFRDAPRAYAAADASCGGGERGKKXXXXXXXXXXXXXXADREGVLRRAVREWPVGGHGVYTVVACPGESATAFVSARCPGPGW 426
R VCR RLRG +PP AV V+AAG+ AAG ++S + + D DGCSWG+VT+WPFRDAPRAY ADA C GG+R K+ G R +EWPVGGHGVYTVVACPGE+A AFVSA+CPGPGW
Sbjct: 481 RVVCRARLRGFLPPVAVSRFVDAAGSAAAGVAALASAEDSAADGRQHYESPQLLPVRRVVRDQGQQRPDGCSWGAVTSWPFRDAPRAYPGADAPCAGGQRSKRGARKGRGGG---------GSEERCAKEWPVGGHGVYTVVACPGETAVAFVSAKCPGPGW 633
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1023 |
| Cds size | 342 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9647.17337.1 >prot_H-paniculata_contig9647.17337.1 ID=prot_H-paniculata_contig9647.17337.1|Name=mRNA_H-paniculata_contig9647.17337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MAAGDNSGGEISDDNGVVVDGCSWGSVTAWPFRDAPRAYAAADASCGGGE
RGKKKKRRARGDGVGGGGADREGVLRRAVREWPVGGHGVYTVVACPGESA
TAFVSARCPGPGW* back to topmRNA from alignment at H-paniculata_contig9647:5733..6755+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig9647.17337.1 ID=mRNA_H-paniculata_contig9647.17337.1|Name=mRNA_H-paniculata_contig9647.17337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-paniculata_contig9647:5733..6755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAAGCCGCTCTGTGTGCCGCGTGCGCTTGAGGGGACTTGTGCCACC
TCCTGCTGTTCGCTTACTTGTGGAAGCGGCTGGAGCCATGGCAGCTGGCG
ATAATAGTGGAGGTGAAATTTCCGACGACAACGGTGTTGTGGTTGACGGG
TGCTCCTGGGGCTCTGTAACCGCGTGGCCCTTCCGAGATGCGCCCCGTGC
CTATGCCGCGGCAGATGCGTCGTGCGGCGGTGGGGAAAGAGGGAAAAAGA
AGAAGCGGCGTGCCCGCGGCGATGGCGTGGGGGGTGGTGGTGCCGATAGG
GAGGGTGTATTACGGCGGGCCGTACGAGAGTGGCCGGTTGGAGGCCACGG
TGTATATACGGTAGTAGCGTGTCCTGGGGAGAGCGCTACAGCGTTTGTTT
CGGCGAGGTGTCCTGGGCCCGGATGGTGATAGACAAGCGGGTTTTTATCT
TAGTTTTTCAATGTTTTAGGCTGAGATTCGTGCGACATGTTTTATTGGTT
ACGTCTGGGTTTTTTTCGTGTTGATGCGGCAGTAGTAAAGTGATGATACG
GTGTGTCAATTTAATGAAAAGAGAGATGAATTGCGTGGATAAATATGGCT
TGTCCGAATATGGCCCACGCATGATGAGATGGATCCCTAATAACAGGGTT
TCAGTTGTCTGGGATGGGAGGCGGGTAAGAAGGAATTAGGGGCGATCTCG
ACGTGCTTGCATTGGTTGGTGCGGTATTTTTTCCAAGTTTTTATGTGATG
AATAAGGGGAAGCGATAGCGAATCCGATTGTCAGAGCATAAACTCCGCGT
AAGAGGTCATGTGGGCGGGTTGACCGCGGGTATGGGTCTAATTATTTTGG
TGACTTTAAGAGTCATACTCAAAGGCGAATTTCTCGTGAGAAAATGTTGC
GTAGGGTAGTTCTGAACGTTTTTTTTTTCTGTTTTTTTCTCTCTCCGTTT
TATTCTATAATCTCCACGAATTTTTTGGAATTTCGAAAATGAAAAATGTT
GTTTCTGCTGACTGTCTTATCTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig9647:5733..6755+ >mRNA_H-paniculata_contig9647.17337.1 ID=mRNA_H-paniculata_contig9647.17337.1|Name=mRNA_H-paniculata_contig9647.17337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig9647:5733..6755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCTGGCGATAATAGTGGAGGTGAAATTTCCGACGACAACGGTGT
TGTGGTTGACGGGTGCTCCTGGGGCTCTGTAACCGCGTGGCCCTTCCGAG
ATGCGCCCCGTGCCTATGCCGCGGCAGATGCGTCGTGCGGCGGTGGGGAA
AGAGGGAAAAAGAAGAAGCGGCGTGCCCGCGGCGATGGCGTGGGGGGTGG
TGGTGCCGATAGGGAGGGTGTATTACGGCGGGCCGTACGAGAGTGGCCGG
TTGGAGGCCACGGTGTATATACGGTAGTAGCGTGTCCTGGGGAGAGCGCT
ACAGCGTTTGTTTCGGCGAGGTGTCCTGGGCCCGGATGGTGAATGGCAGC
TGGCGATAATAGTGGAGGTGAAATTTCCGACGACAACGGTGTTGTGGTTG
ACGGGTGCTCCTGGGGCTCTGTAACCGCGTGGCCCTTCCGAGATGCGCCC
CGTGCCTATGCCGCGGCAGATGCGTCGTGCGGCGGTGGGGAAAGAGGGAA
AAAGAAGAAGCGGCGTGCCCGCGGCGATGGCGTGGGGGGTGGTGGTGCCG
ATAGGGAGGGTGTATTACGGCGGGCCGTACGAGAGTGGCCGGTTGGAGGC
CACGGTGTATATACGGTAGTAGCGTGTCCTGGGGAGAGCGCTACAGCGTT
TGTTTCGGCGAGGTGTCCTGGGCCCGGATGGTGA back to top
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