mRNA_H-paniculata_contig9647.17337.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9647.17337.1
Unique NamemRNA_H-paniculata_contig9647.17337.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9647.17337.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 5.910e-36
Identity = 79/162 (48.77%), Postives = 93/162 (57.41%), Query Frame = 1 
Query:   10 RSVCRVRLRGLVPPPAVRLLVEAAGAMAAG-------DNSGGE----------------ISDDNGVVVDGCSWGSVTAWPFRDAPRAYAAADASCGGGERGKKXXXXXXXXXXXXXXADREGVLRRAVREWPVGGHGVYTVVACPGESATAFVSARCPGPGW 426
            R VCR RLRG +PP AV   V+AAG+ AAG       ++S  +                + D      DGCSWG+VT+WPFRDAPRAY  ADA C GG+R K+                  G   R  +EWPVGGHGVYTVVACPGE+A AFVSA+CPGPGW
Sbjct:  481 RVVCRARLRGFLPPVAVSRFVDAAGSAAAGVAALASAEDSAADGRQHYESPQLLPVRRVVRDQGQQRPDGCSWGAVTSWPFRDAPRAYPGADAPCAGGQRSKRGARKGRGGG---------GSEERCAKEWPVGGHGVYTVVACPGETAVAFVSAKCPGPGW 633
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9647.17337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K807_9PHAE5.910e-3648.77Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9647contigH-paniculata_contig9647:5733..6755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1023
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9647.17337.1prot_H-paniculata_contig9647.17337.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9647 5820..6161 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.4034867-UTR-H-paniculata_contig9647:5732..58191622931196.4034867-UTR-H-paniculata_contig9647:5732..5819Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9647 5733..5819 +
1691481633.7305021-UTR-H-paniculata_contig9647:5732..58191691481633.7305021-UTR-H-paniculata_contig9647:5732..5819Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9647 5733..5819 +
1622931196.4318342-UTR-H-paniculata_contig9647:6161..67551622931196.4318342-UTR-H-paniculata_contig9647:6161..6755Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9647 6162..6755 +
1691481633.7582788-UTR-H-paniculata_contig9647:6161..67551691481633.7582788-UTR-H-paniculata_contig9647:6161..6755Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9647 6162..6755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.418753-CDS-H-paniculata_contig9647:5819..61611622931196.418753-CDS-H-paniculata_contig9647:5819..6161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9647 5820..6161 +
1691481633.7423573-CDS-H-paniculata_contig9647:5819..61611691481633.7423573-CDS-H-paniculata_contig9647:5819..6161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9647 5820..6161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9647.17337.1

>prot_H-paniculata_contig9647.17337.1 ID=prot_H-paniculata_contig9647.17337.1|Name=mRNA_H-paniculata_contig9647.17337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MAAGDNSGGEISDDNGVVVDGCSWGSVTAWPFRDAPRAYAAADASCGGGE
RGKKKKRRARGDGVGGGGADREGVLRRAVREWPVGGHGVYTVVACPGESA
TAFVSARCPGPGW*
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mRNA from alignment at H-paniculata_contig9647:5733..6755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9647.17337.1 ID=mRNA_H-paniculata_contig9647.17337.1|Name=mRNA_H-paniculata_contig9647.17337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-paniculata_contig9647:5733..6755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAAGCCGCTCTGTGTGCCGCGTGCGCTTGAGGGGACTTGTGCCACC
TCCTGCTGTTCGCTTACTTGTGGAAGCGGCTGGAGCCATGGCAGCTGGCG
ATAATAGTGGAGGTGAAATTTCCGACGACAACGGTGTTGTGGTTGACGGG
TGCTCCTGGGGCTCTGTAACCGCGTGGCCCTTCCGAGATGCGCCCCGTGC
CTATGCCGCGGCAGATGCGTCGTGCGGCGGTGGGGAAAGAGGGAAAAAGA
AGAAGCGGCGTGCCCGCGGCGATGGCGTGGGGGGTGGTGGTGCCGATAGG
GAGGGTGTATTACGGCGGGCCGTACGAGAGTGGCCGGTTGGAGGCCACGG
TGTATATACGGTAGTAGCGTGTCCTGGGGAGAGCGCTACAGCGTTTGTTT
CGGCGAGGTGTCCTGGGCCCGGATGGTGATAGACAAGCGGGTTTTTATCT
TAGTTTTTCAATGTTTTAGGCTGAGATTCGTGCGACATGTTTTATTGGTT
ACGTCTGGGTTTTTTTCGTGTTGATGCGGCAGTAGTAAAGTGATGATACG
GTGTGTCAATTTAATGAAAAGAGAGATGAATTGCGTGGATAAATATGGCT
TGTCCGAATATGGCCCACGCATGATGAGATGGATCCCTAATAACAGGGTT
TCAGTTGTCTGGGATGGGAGGCGGGTAAGAAGGAATTAGGGGCGATCTCG
ACGTGCTTGCATTGGTTGGTGCGGTATTTTTTCCAAGTTTTTATGTGATG
AATAAGGGGAAGCGATAGCGAATCCGATTGTCAGAGCATAAACTCCGCGT
AAGAGGTCATGTGGGCGGGTTGACCGCGGGTATGGGTCTAATTATTTTGG
TGACTTTAAGAGTCATACTCAAAGGCGAATTTCTCGTGAGAAAATGTTGC
GTAGGGTAGTTCTGAACGTTTTTTTTTTCTGTTTTTTTCTCTCTCCGTTT
TATTCTATAATCTCCACGAATTTTTTGGAATTTCGAAAATGAAAAATGTT
GTTTCTGCTGACTGTCTTATCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig9647:5733..6755+

>mRNA_H-paniculata_contig9647.17337.1 ID=mRNA_H-paniculata_contig9647.17337.1|Name=mRNA_H-paniculata_contig9647.17337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig9647:5733..6755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCTGGCGATAATAGTGGAGGTGAAATTTCCGACGACAACGGTGT
TGTGGTTGACGGGTGCTCCTGGGGCTCTGTAACCGCGTGGCCCTTCCGAG
ATGCGCCCCGTGCCTATGCCGCGGCAGATGCGTCGTGCGGCGGTGGGGAA
AGAGGGAAAAAGAAGAAGCGGCGTGCCCGCGGCGATGGCGTGGGGGGTGG
TGGTGCCGATAGGGAGGGTGTATTACGGCGGGCCGTACGAGAGTGGCCGG
TTGGAGGCCACGGTGTATATACGGTAGTAGCGTGTCCTGGGGAGAGCGCT
ACAGCGTTTGTTTCGGCGAGGTGTCCTGGGCCCGGATGGTGAATGGCAGC
TGGCGATAATAGTGGAGGTGAAATTTCCGACGACAACGGTGTTGTGGTTG
ACGGGTGCTCCTGGGGCTCTGTAACCGCGTGGCCCTTCCGAGATGCGCCC
CGTGCCTATGCCGCGGCAGATGCGTCGTGCGGCGGTGGGGAAAGAGGGAA
AAAGAAGAAGCGGCGTGCCCGCGGCGATGGCGTGGGGGGTGGTGGTGCCG
ATAGGGAGGGTGTATTACGGCGGGCCGTACGAGAGTGGCCGGTTGGAGGC
CACGGTGTATATACGGTAGTAGCGTGTCCTGGGGAGAGCGCTACAGCGTT
TGTTTCGGCGAGGTGTCCTGGGCCCGGATGGTGA
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