Homology
BLAST of mRNA_H-paniculata_contig9647.17336.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE) HSP 1 Score: 144 bits (362), Expect = 8.180e-34 Identity = 132/417 (31.65%), Postives = 180/417 (43.17%), Query Frame = 1 Query: 1 LGVAGGGAGGADRFISVFDLSSRTFRPGKALHDRLLACLGAAGGGGKIGGTGXDGGMTEGPAGTPAVAATATATDVEMVMCWWGDNDMGKGSKCEEREGGGSEDGKQGSGVKSESADTSHKSVQGERRAGGDFVGRMAQANIGPTMRACREKGLIRDEKVRGGGVEKKIHREPHQERHLGCGCREVPFPPGLFSVAKKVNLEPDIRFFREVCCPDLDWVGQGLISPPPRISFEGPSAASDNKNGRRQSASADRRGETSAATDAEEGGVRRGMLSVPAEDTQAEPKTETNSMDFVPFREQPPNPMMSGSHSMWSSSTTTGIGESQQSAVEMSSFGGSSADMPKAKAXXXXXXXXXXXKAETTAETAAAKSKISLLMLDLFEWLGAASCGLEAQLRRNPFPPEPYLSEFVTPQHLQYRQ 1251
+GV GG AGG DR++S DLS+++FRPGK LHDR+L+CL + G+G DG V+MV+ W G +G+GS G+ G ++ES+ TS S Q G A +G R KG + K G ++ C CR++ FPPG FS A++V+L PDIRFFRE CCPDLD+VGQGL + P R+G + A T NS T+T ++ V+ S GGS + ++ +AK LL+LD+FEWLGA SCGL+A +RR+P PPEPYLS+F TP+HL+YR+
Sbjct: 207 VGVLGGSAGGPDRYVSAVDLSAKSFRPGKPLHDRVLSCLSSC-----RWGSGDDGAA------------------VDMVVHWCGSGGVGQGS------------GEGGELAEAESSGTSEASGQAPEGCG------QGAAAVGR-----RPKGECAEGKQEG-------------QQSQQC-CRDITFPPG-FS-AERVDLTPDIRFFREACCPDLDFVGQGLAATAPTTVQRA---------------------------------RRKGRKGIEA--------TAFNS-------------------------TSTA-----ENLVDGSDDGGSDDHFTDRR--------HPRLPPPVASQPESAKC---LLVLDMFEWLGAVSCGLDAAVRRSPSPPEPYLSKFETPRHLRYRR 479
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1305 |
| Cds size | 1305 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9647.17336.1 >prot_H-paniculata_contig9647.17336.1 ID=prot_H-paniculata_contig9647.17336.1|Name=mRNA_H-paniculata_contig9647.17336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=435bp
LGVAGGGAGGADRFISVFDLSSRTFRPGKALHDRLLACLGAAGGGGKIGG
TGGDGGMTEGPAGTPAVAATATATDVEMVMCWWGDNDMGKGSKCEEREGG
GSEDGKQGSGVKSESADTSHKSVQGERRAGGDFVGRMAQANIGPTMRACR
EKGLIRDEKVRGGGVEKKIHREPHQERHLGCGCREVPFPPGLFSVAKKVN
LEPDIRFFREVCCPDLDWVGQGLISPPPRISFEGPSAASDNKNGRRQSAS
ADRRGETSAATDAEEGGVRRGMLSVPAEDTQAEPKTETNSMDFVPFREQP
PNPMMSGSHSMWSSSTTTGIGESQQSAVEMSSFGGSSADMPKAKAAAAAA
AVAEIEKAETTAETAAAKSKISLLMLDLFEWLGAASCGLEAQLRRNPFPP
EPYLSEFVTPQHLQYRQSPGATARLGQAGREAGIE back to topmRNA from alignment at H-paniculata_contig9647:4410..5714+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig9647.17336.1 ID=mRNA_H-paniculata_contig9647.17336.1|Name=mRNA_H-paniculata_contig9647.17336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-paniculata_contig9647:4410..5714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGGGTAGCCGGGGGTGGTGCTGGCGGCGCCGATCGTTTCATATCGGT
GTTCGACCTCTCTTCAAGGACGTTTCGTCCTGGGAAAGCACTCCACGATC
GCCTTTTGGCCTGCCTGGGCGCAGCAGGAGGCGGAGGAAAAATAGGTGGA
ACGGGAGGTGATGGGGGAATGACAGAAGGTCCTGCGGGGACACCGGCAGT
GGCGGCGACGGCAACGGCGACGGATGTTGAGATGGTTATGTGCTGGTGGG
GTGATAATGACATGGGAAAGGGTAGCAAATGTGAGGAGCGAGAAGGTGGC
GGGAGCGAAGATGGGAAGCAAGGGAGTGGTGTGAAATCTGAGAGTGCGGA
TACTAGTCACAAGTCGGTCCAAGGTGAACGTCGAGCTGGCGGCGACTTTG
TTGGCAGGATGGCACAAGCTAATATCGGGCCGACAATGAGGGCGTGTAGA
GAGAAGGGATTAATTAGGGATGAAAAGGTGAGGGGTGGCGGTGTTGAGAA
AAAGATCCACAGGGAACCACACCAGGAGCGGCATTTGGGATGTGGTTGTA
GAGAGGTGCCGTTTCCCCCCGGACTGTTTTCAGTGGCGAAAAAAGTCAAC
CTCGAGCCGGATATACGTTTCTTTCGAGAAGTGTGTTGTCCGGACCTAGA
TTGGGTTGGGCAAGGCTTGATATCGCCACCGCCACGGATATCGTTCGAGG
GACCGAGTGCTGCTTCAGATAACAAGAACGGCAGGCGACAGTCGGCCTCT
GCTGATAGACGAGGGGAAACGTCTGCAGCAACCGACGCAGAGGAGGGAGG
GGTAAGGCGAGGGATGCTGTCGGTGCCAGCGGAAGACACACAGGCGGAGC
CTAAGACGGAAACAAATAGCATGGATTTTGTACCTTTTCGAGAGCAGCCG
CCAAACCCAATGATGTCCGGAAGCCATTCAATGTGGTCATCATCAACAAC
AACAGGGATCGGAGAATCTCAACAAAGCGCGGTCGAAATGTCTTCGTTTG
GCGGTTCTTCGGCAGACATGCCCAAGGCTAAGGCAGCAGCCGCAGCGGCG
GCGGTGGCGGAGATTGAGAAAGCAGAGACGACGGCCGAGACAGCAGCAGC
GAAGAGTAAGATATCCCTGCTGATGCTCGACCTCTTCGAGTGGCTGGGCG
CCGCTTCTTGTGGCCTCGAAGCTCAGCTTCGCCGCAACCCTTTCCCCCCA
GAGCCCTATTTATCAGAGTTTGTAACTCCCCAACACTTGCAGTATCGACA
ATCCCCAGGGGCGACGGCACGACTAGGTCAGGCAGGACGGGAGGCAGGAA
TAGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig9647:4410..5714+ >mRNA_H-paniculata_contig9647.17336.1 ID=mRNA_H-paniculata_contig9647.17336.1|Name=mRNA_H-paniculata_contig9647.17336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at H-paniculata_contig9647:4410..5714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGGGTAGCCGGGGGTGGTGCTGGCGGCGCCGATCGTTTCATATCGGT
GTTCGACCTCTCTTCAAGGACGTTTCGTCCTGGGAAAGCACTCCACGATC
GCCTTTTGGCCTGCCTGGGCGCAGCAGGAGGCGGAGGAAAAATAGGTGGA
ACGGGAGGTGATGGGGGAATGACAGAAGGTCCTGCGGGGACACCGGCAGT
GGCGGCGACGGCAACGGCGACGGATGTTGAGATGGTTATGTGCTGGTGGG
GTGATAATGACATGGGAAAGGGTAGCAAATGTGAGGAGCGAGAAGGTGGC
GGGAGCGAAGATGGGAAGCAAGGGAGTGGTGTGAAATCTGAGAGTGCGGA
TACTAGTCACAAGTCGGTCCAAGGTGAACGTCGAGCTGGCGGCGACTTTG
TTGGCAGGATGGCACAAGCTAATATCGGGCCGACAATGAGGGCGTGTAGA
GAGAAGGGATTAATTAGGGATGAAAAGGTGAGGGGTGGCGGTGTTGAGAA
AAAGATCCACAGGGAACCACACCAGGAGCGGCATTTGGGATGTGGTTGTA
GAGAGGTGCCGTTTCCCCCCGGACTGTTTTCAGTGGCGAAAAAAGTCAAC
CTCGAGCCGGATATACGTTTCTTTCGAGAAGTGTGTTGTCCGGACCTAGA
TTGGGTTGGGCAAGGCTTGATATCGCCACCGCCACGGATATCGTTCGAGG
GACCGAGTGCTGCTTCAGATAACAAGAACGGCAGGCGACAGTCGGCCTCT
GCTGATAGACGAGGGGAAACGTCTGCAGCAACCGACGCAGAGGAGGGAGG
GGTAAGGCGAGGGATGCTGTCGGTGCCAGCGGAAGACACACAGGCGGAGC
CTAAGACGGAAACAAATAGCATGGATTTTGTACCTTTTCGAGAGCAGCCG
CCAAACCCAATGATGTCCGGAAGCCATTCAATGTGGTCATCATCAACAAC
AACAGGGATCGGAGAATCTCAACAAAGCGCGGTCGAAATGTCTTCGTTTG
GCGGTTCTTCGGCAGACATGCCCAAGGCTAAGGCAGCAGCCGCAGCGGCG
GCGGTGGCGGAGATTGAGAAAGCAGAGACGACGGCCGAGACAGCAGCAGC
GAAGAGTAAGATATCCCTGCTGATGCTCGACCTCTTCGAGTGGCTGGGCG
CCGCTTCTTGTGGCCTCGAAGCTCAGCTTCGCCGCAACCCTTTCCCCCCA
GAGCCCTATTTATCAGAGTTTGTAACTCCCCAACACTTGCAGTATCGACA
ATCCCCAGGGGCGACGGCACGACTAGGTCAGGCAGGACGGGAGGCAGGAA
TAGAGCTCGGGGTAGCCGGGGGTGGTGCTGGCGGCGCCGATCGTTTCATA
TCGGTGTTCGACCTCTCTTCAAGGACGTTTCGTCCTGGGAAAGCACTCCA
CGATCGCCTTTTGGCCTGCCTGGGCGCAGCAGGAGGCGGAGGAAAAATAG
GTGGAACGGGAGGTGATGGGGGAATGACAGAAGGTCCTGCGGGGACACCG
GCAGTGGCGGCGACGGCAACGGCGACGGATGTTGAGATGGTTATGTGCTG
GTGGGGTGATAATGACATGGGAAAGGGTAGCAAATGTGAGGAGCGAGAAG
GTGGCGGGAGCGAAGATGGGAAGCAAGGGAGTGGTGTGAAATCTGAGAGT
GCGGATACTAGTCACAAGTCGGTCCAAGGTGAACGTCGAGCTGGCGGCGA
CTTTGTTGGCAGGATGGCACAAGCTAATATCGGGCCGACAATGAGGGCGT
GTAGAGAGAAGGGATTAATTAGGGATGAAAAGGTGAGGGGTGGCGGTGTT
GAGAAAAAGATCCACAGGGAACCACACCAGGAGCGGCATTTGGGATGTGG
TTGTAGAGAGGTGCCGTTTCCCCCCGGACTGTTTTCAGTGGCGAAAAAAG
TCAACCTCGAGCCGGATATACGTTTCTTTCGAGAAGTGTGTTGTCCGGAC
CTAGATTGGGTTGGGCAAGGCTTGATATCGCCACCGCCACGGATATCGTT
CGAGGGACCGAGTGCTGCTTCAGATAACAAGAACGGCAGGCGACAGTCGG
CCTCTGCTGATAGACGAGGGGAAACGTCTGCAGCAACCGACGCAGAGGAG
GGAGGGGTAAGGCGAGGGATGCTGTCGGTGCCAGCGGAAGACACACAGGC
GGAGCCTAAGACGGAAACAAATAGCATGGATTTTGTACCTTTTCGAGAGC
AGCCGCCAAACCCAATGATGTCCGGAAGCCATTCAATGTGGTCATCATCA
ACAACAACAGGGATCGGAGAATCTCAACAAAGCGCGGTCGAAATGTCTTC
GTTTGGCGGTTCTTCGGCAGACATGCCCAAGGCTAAGGCAGCAGCCGCAG
CGGCGGCGGTGGCGGAGATTGAGAAAGCAGAGACGACGGCCGAGACAGCA
GCAGCGAAGAGTAAGATATCCCTGCTGATGCTCGACCTCTTCGAGTGGCT
GGGCGCCGCTTCTTGTGGCCTCGAAGCTCAGCTTCGCCGCAACCCTTTCC
CCCCAGAGCCCTATTTATCAGAGTTTGTAACTCCCCAACACTTGCAGTAT
CGACAATCCCCAGGGGCGACGGCACGACTAGGTCAGGCAGGACGGGAGGC
AGGAATAGAG back to top
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