mRNA_H-paniculata_contig9647.17336.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9647.17336.1
Unique NamemRNA_H-paniculata_contig9647.17336.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9647.17336.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 8.180e-34
Identity = 132/417 (31.65%), Postives = 180/417 (43.17%), Query Frame = 1 
Query:    1 LGVAGGGAGGADRFISVFDLSSRTFRPGKALHDRLLACLGAAGGGGKIGGTGXDGGMTEGPAGTPAVAATATATDVEMVMCWWGDNDMGKGSKCEEREGGGSEDGKQGSGVKSESADTSHKSVQGERRAGGDFVGRMAQANIGPTMRACREKGLIRDEKVRGGGVEKKIHREPHQERHLGCGCREVPFPPGLFSVAKKVNLEPDIRFFREVCCPDLDWVGQGLISPPPRISFEGPSAASDNKNGRRQSASADRRGETSAATDAEEGGVRRGMLSVPAEDTQAEPKTETNSMDFVPFREQPPNPMMSGSHSMWSSSTTTGIGESQQSAVEMSSFGGSSADMPKAKAXXXXXXXXXXXKAETTAETAAAKSKISLLMLDLFEWLGAASCGLEAQLRRNPFPPEPYLSEFVTPQHLQYRQ 1251
            +GV GG AGG DR++S  DLS+++FRPGK LHDR+L+CL +        G+G DG                    V+MV+ W G   +G+GS            G+ G   ++ES+ TS  S Q     G         A +G      R KG   + K  G             ++   C CR++ FPPG FS A++V+L PDIRFFRE CCPDLD+VGQGL +  P                                        R+G   + A        T  NS                         T+T      ++ V+ S  GGS       +                 ++  +AK    LL+LD+FEWLGA SCGL+A +RR+P PPEPYLS+F TP+HL+YR+
Sbjct:  207 VGVLGGSAGGPDRYVSAVDLSAKSFRPGKPLHDRVLSCLSSC-----RWGSGDDGAA------------------VDMVVHWCGSGGVGQGS------------GEGGELAEAESSGTSEASGQAPEGCG------QGAAAVGR-----RPKGECAEGKQEG-------------QQSQQC-CRDITFPPG-FS-AERVDLTPDIRFFREACCPDLDFVGQGLAATAPTTVQRA---------------------------------RRKGRKGIEA--------TAFNS-------------------------TSTA-----ENLVDGSDDGGSDDHFTDRR--------HPRLPPPVASQPESAKC---LLVLDMFEWLGAVSCGLDAAVRRSPSPPEPYLSKFETPRHLRYRR 479
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9647.17336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K807_9PHAE8.180e-3431.65Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9647contigH-paniculata_contig9647:4410..5714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1305
Cds size1305
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.3392894-CDS-H-paniculata_contig9647:4409..57141622931196.3392894-CDS-H-paniculata_contig9647:4409..5714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9647 4410..5714 +
1691481633.716605-CDS-H-paniculata_contig9647:4409..57141691481633.716605-CDS-H-paniculata_contig9647:4409..5714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9647 4410..5714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9647.17336.1prot_H-paniculata_contig9647.17336.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9647 4410..5714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9647.17336.1

>prot_H-paniculata_contig9647.17336.1 ID=prot_H-paniculata_contig9647.17336.1|Name=mRNA_H-paniculata_contig9647.17336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=435bp
LGVAGGGAGGADRFISVFDLSSRTFRPGKALHDRLLACLGAAGGGGKIGG
TGGDGGMTEGPAGTPAVAATATATDVEMVMCWWGDNDMGKGSKCEEREGG
GSEDGKQGSGVKSESADTSHKSVQGERRAGGDFVGRMAQANIGPTMRACR
EKGLIRDEKVRGGGVEKKIHREPHQERHLGCGCREVPFPPGLFSVAKKVN
LEPDIRFFREVCCPDLDWVGQGLISPPPRISFEGPSAASDNKNGRRQSAS
ADRRGETSAATDAEEGGVRRGMLSVPAEDTQAEPKTETNSMDFVPFREQP
PNPMMSGSHSMWSSSTTTGIGESQQSAVEMSSFGGSSADMPKAKAAAAAA
AVAEIEKAETTAETAAAKSKISLLMLDLFEWLGAASCGLEAQLRRNPFPP
EPYLSEFVTPQHLQYRQSPGATARLGQAGREAGIE
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mRNA from alignment at H-paniculata_contig9647:4410..5714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9647.17336.1 ID=mRNA_H-paniculata_contig9647.17336.1|Name=mRNA_H-paniculata_contig9647.17336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-paniculata_contig9647:4410..5714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGGGTAGCCGGGGGTGGTGCTGGCGGCGCCGATCGTTTCATATCGGT
GTTCGACCTCTCTTCAAGGACGTTTCGTCCTGGGAAAGCACTCCACGATC
GCCTTTTGGCCTGCCTGGGCGCAGCAGGAGGCGGAGGAAAAATAGGTGGA
ACGGGAGGTGATGGGGGAATGACAGAAGGTCCTGCGGGGACACCGGCAGT
GGCGGCGACGGCAACGGCGACGGATGTTGAGATGGTTATGTGCTGGTGGG
GTGATAATGACATGGGAAAGGGTAGCAAATGTGAGGAGCGAGAAGGTGGC
GGGAGCGAAGATGGGAAGCAAGGGAGTGGTGTGAAATCTGAGAGTGCGGA
TACTAGTCACAAGTCGGTCCAAGGTGAACGTCGAGCTGGCGGCGACTTTG
TTGGCAGGATGGCACAAGCTAATATCGGGCCGACAATGAGGGCGTGTAGA
GAGAAGGGATTAATTAGGGATGAAAAGGTGAGGGGTGGCGGTGTTGAGAA
AAAGATCCACAGGGAACCACACCAGGAGCGGCATTTGGGATGTGGTTGTA
GAGAGGTGCCGTTTCCCCCCGGACTGTTTTCAGTGGCGAAAAAAGTCAAC
CTCGAGCCGGATATACGTTTCTTTCGAGAAGTGTGTTGTCCGGACCTAGA
TTGGGTTGGGCAAGGCTTGATATCGCCACCGCCACGGATATCGTTCGAGG
GACCGAGTGCTGCTTCAGATAACAAGAACGGCAGGCGACAGTCGGCCTCT
GCTGATAGACGAGGGGAAACGTCTGCAGCAACCGACGCAGAGGAGGGAGG
GGTAAGGCGAGGGATGCTGTCGGTGCCAGCGGAAGACACACAGGCGGAGC
CTAAGACGGAAACAAATAGCATGGATTTTGTACCTTTTCGAGAGCAGCCG
CCAAACCCAATGATGTCCGGAAGCCATTCAATGTGGTCATCATCAACAAC
AACAGGGATCGGAGAATCTCAACAAAGCGCGGTCGAAATGTCTTCGTTTG
GCGGTTCTTCGGCAGACATGCCCAAGGCTAAGGCAGCAGCCGCAGCGGCG
GCGGTGGCGGAGATTGAGAAAGCAGAGACGACGGCCGAGACAGCAGCAGC
GAAGAGTAAGATATCCCTGCTGATGCTCGACCTCTTCGAGTGGCTGGGCG
CCGCTTCTTGTGGCCTCGAAGCTCAGCTTCGCCGCAACCCTTTCCCCCCA
GAGCCCTATTTATCAGAGTTTGTAACTCCCCAACACTTGCAGTATCGACA
ATCCCCAGGGGCGACGGCACGACTAGGTCAGGCAGGACGGGAGGCAGGAA
TAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9647:4410..5714+

>mRNA_H-paniculata_contig9647.17336.1 ID=mRNA_H-paniculata_contig9647.17336.1|Name=mRNA_H-paniculata_contig9647.17336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at H-paniculata_contig9647:4410..5714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGGGTAGCCGGGGGTGGTGCTGGCGGCGCCGATCGTTTCATATCGGT
GTTCGACCTCTCTTCAAGGACGTTTCGTCCTGGGAAAGCACTCCACGATC
GCCTTTTGGCCTGCCTGGGCGCAGCAGGAGGCGGAGGAAAAATAGGTGGA
ACGGGAGGTGATGGGGGAATGACAGAAGGTCCTGCGGGGACACCGGCAGT
GGCGGCGACGGCAACGGCGACGGATGTTGAGATGGTTATGTGCTGGTGGG
GTGATAATGACATGGGAAAGGGTAGCAAATGTGAGGAGCGAGAAGGTGGC
GGGAGCGAAGATGGGAAGCAAGGGAGTGGTGTGAAATCTGAGAGTGCGGA
TACTAGTCACAAGTCGGTCCAAGGTGAACGTCGAGCTGGCGGCGACTTTG
TTGGCAGGATGGCACAAGCTAATATCGGGCCGACAATGAGGGCGTGTAGA
GAGAAGGGATTAATTAGGGATGAAAAGGTGAGGGGTGGCGGTGTTGAGAA
AAAGATCCACAGGGAACCACACCAGGAGCGGCATTTGGGATGTGGTTGTA
GAGAGGTGCCGTTTCCCCCCGGACTGTTTTCAGTGGCGAAAAAAGTCAAC
CTCGAGCCGGATATACGTTTCTTTCGAGAAGTGTGTTGTCCGGACCTAGA
TTGGGTTGGGCAAGGCTTGATATCGCCACCGCCACGGATATCGTTCGAGG
GACCGAGTGCTGCTTCAGATAACAAGAACGGCAGGCGACAGTCGGCCTCT
GCTGATAGACGAGGGGAAACGTCTGCAGCAACCGACGCAGAGGAGGGAGG
GGTAAGGCGAGGGATGCTGTCGGTGCCAGCGGAAGACACACAGGCGGAGC
CTAAGACGGAAACAAATAGCATGGATTTTGTACCTTTTCGAGAGCAGCCG
CCAAACCCAATGATGTCCGGAAGCCATTCAATGTGGTCATCATCAACAAC
AACAGGGATCGGAGAATCTCAACAAAGCGCGGTCGAAATGTCTTCGTTTG
GCGGTTCTTCGGCAGACATGCCCAAGGCTAAGGCAGCAGCCGCAGCGGCG
GCGGTGGCGGAGATTGAGAAAGCAGAGACGACGGCCGAGACAGCAGCAGC
GAAGAGTAAGATATCCCTGCTGATGCTCGACCTCTTCGAGTGGCTGGGCG
CCGCTTCTTGTGGCCTCGAAGCTCAGCTTCGCCGCAACCCTTTCCCCCCA
GAGCCCTATTTATCAGAGTTTGTAACTCCCCAACACTTGCAGTATCGACA
ATCCCCAGGGGCGACGGCACGACTAGGTCAGGCAGGACGGGAGGCAGGAA
TAGAGCTCGGGGTAGCCGGGGGTGGTGCTGGCGGCGCCGATCGTTTCATA
TCGGTGTTCGACCTCTCTTCAAGGACGTTTCGTCCTGGGAAAGCACTCCA
CGATCGCCTTTTGGCCTGCCTGGGCGCAGCAGGAGGCGGAGGAAAAATAG
GTGGAACGGGAGGTGATGGGGGAATGACAGAAGGTCCTGCGGGGACACCG
GCAGTGGCGGCGACGGCAACGGCGACGGATGTTGAGATGGTTATGTGCTG
GTGGGGTGATAATGACATGGGAAAGGGTAGCAAATGTGAGGAGCGAGAAG
GTGGCGGGAGCGAAGATGGGAAGCAAGGGAGTGGTGTGAAATCTGAGAGT
GCGGATACTAGTCACAAGTCGGTCCAAGGTGAACGTCGAGCTGGCGGCGA
CTTTGTTGGCAGGATGGCACAAGCTAATATCGGGCCGACAATGAGGGCGT
GTAGAGAGAAGGGATTAATTAGGGATGAAAAGGTGAGGGGTGGCGGTGTT
GAGAAAAAGATCCACAGGGAACCACACCAGGAGCGGCATTTGGGATGTGG
TTGTAGAGAGGTGCCGTTTCCCCCCGGACTGTTTTCAGTGGCGAAAAAAG
TCAACCTCGAGCCGGATATACGTTTCTTTCGAGAAGTGTGTTGTCCGGAC
CTAGATTGGGTTGGGCAAGGCTTGATATCGCCACCGCCACGGATATCGTT
CGAGGGACCGAGTGCTGCTTCAGATAACAAGAACGGCAGGCGACAGTCGG
CCTCTGCTGATAGACGAGGGGAAACGTCTGCAGCAACCGACGCAGAGGAG
GGAGGGGTAAGGCGAGGGATGCTGTCGGTGCCAGCGGAAGACACACAGGC
GGAGCCTAAGACGGAAACAAATAGCATGGATTTTGTACCTTTTCGAGAGC
AGCCGCCAAACCCAATGATGTCCGGAAGCCATTCAATGTGGTCATCATCA
ACAACAACAGGGATCGGAGAATCTCAACAAAGCGCGGTCGAAATGTCTTC
GTTTGGCGGTTCTTCGGCAGACATGCCCAAGGCTAAGGCAGCAGCCGCAG
CGGCGGCGGTGGCGGAGATTGAGAAAGCAGAGACGACGGCCGAGACAGCA
GCAGCGAAGAGTAAGATATCCCTGCTGATGCTCGACCTCTTCGAGTGGCT
GGGCGCCGCTTCTTGTGGCCTCGAAGCTCAGCTTCGCCGCAACCCTTTCC
CCCCAGAGCCCTATTTATCAGAGTTTGTAACTCCCCAACACTTGCAGTAT
CGACAATCCCCAGGGGCGACGGCACGACTAGGTCAGGCAGGACGGGAGGC
AGGAATAGAG
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