Homology
BLAST of mRNA_H-paniculata_contig9631.17329.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.380e-10 Identity = 43/93 (46.24%), Postives = 52/93 (55.91%), Query Frame = 2 Query: 143 LAGALTHASVRLHVEDHPLLLQYKGMRAGRTSQNAVNHLPYNADMVMLAHNDPGDGAGFTCNKRVLVDDLNGNSSGPVRAALPVMNDIPVESA 421
L A+ A V L VEDHPL+L Y GR A NHL + DMV+L HN+ GA FTCNKRV VDD G S ++ +M D+ E A
Sbjct: 409 LQEAVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAENHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSD-ASPSMQLMTDVEYEGA 497
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 429 |
Cds size | 210 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9631.17329.1 >prot_H-paniculata_contig9631.17329.1 ID=prot_H-paniculata_contig9631.17329.1|Name=mRNA_H-paniculata_contig9631.17329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MRAGRTSQNAVNHLPYNADMVMLAHNDPGDGAGFTCNKRVLVDDLNGNSS GPVRAALPVMNDIPVESAKM back to topmRNA from alignment at H-paniculata_contig9631:1425..2785- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig9631.17329.1 ID=mRNA_H-paniculata_contig9631.17329.1|Name=mRNA_H-paniculata_contig9631.17329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1361bp|location=Sequence derived from alignment at H-paniculata_contig9631:1425..2785- (Halopteris paniculata Hal_grac_a_UBK monoicous) AAGAAGAAAGGGAAGAAGAAGGCTTGCGACAGTGCAGACTCCTCTGAGCA
ACCTGTGAAGAAGAAAGCCCGGAAGACTACTTCTGCGACCGTTCGTCCTC
TTGCTGTTGCTGGTGCCAGCAACTCTTCTGCGTTGGTGAACGCTTGCAGG
TACAGTTTGGGGACGAATAAATGTCGTTGTGTTGCTTTCTATGGATGGTA
GACTTTGTTGTCATCATCAGGTAGGTAGTCAGTCTGCCTCTGTTGCTTGC
ATGTTTTACTTGTTAATCTTCCTCATATCAACTTGCATTACACCTGGCGT
CAAAGTACAGGAGCTCCGTTACATGTAGACTACATGAGACTGCTTCATGT
CTTCTACATGAATCACTGCATACTTGTTCACAACAGTGTGTCCTCCATGG
ATTTCGCTTCACGATAATGATGACTGGCGTGCACGATCCCTAAACATCTA
CTACGCACTCCTATTCGTTGCCGCTACGAAGGATCGAGAACGTTGTTATT
CATGATGGGGTGCCTCTTGCAGCTGGGTCGGCGGCCATGACAGAGGGGAG
TCTGTCCACCAAGTGTGCGGCCAAATTGGTGGTTATCTCCATTGCAGGAG
ACAAGACCCTCCTCAACCCTTCTACATCAACCGACGCCCGACTGAACAAG
CTATTCCAATCCGTGAAAGACAGCCTGCACCCCCGTGGAACTGTTGCAAT
CATGGGACCTCACCCTTGGCATCTGCACGCTGGACTCATCCACGGTGAGT
ATTTTGTCTTTGCTGTTTGTGCAACTTCATAAAAAATACGCCATTGCTGT
AACATGGAAGCCCATCGACCGCTTCAGCCCACTATACCTAATGGTTTATG
GGAGGAGAAAGTAGCGTGTACACGGCATAATAGAGTGTGCAACATGATTA
CATCAAGGTGTAATGTGAACGTGCGATTGGGGTATCACTGGACGTCCATT
CTACGTTTTTTCACATGTTGCACGATAAACTCCGCCTGCTGAGGCATATG
AACGACCACGGAGGTATTGGAGCACACATATATCGGGTGTATTCCAAACA
TGCATTCCGTCGACTTTCTTACTGTGTTTGCAGGTGCTCTGACCCATGCA
TCGGTAAGATTGCACGTTGAGGATCACCCACTTCTCCTCCAGTACAAGGG
TATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACCTTACA
ATGCAGACATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGC
TTCACGTGCAACAAGCGTGTACTGGTGGACGATCTCAACGGCAACAGCAG
CGGTCCCGTCAGAGCAGCCCTCCCAGTGATGAACGACATACCTGTGGAGA
GTGCCAAGATG back to topCoding sequence (CDS) from alignment at H-paniculata_contig9631:1425..2785- >mRNA_H-paniculata_contig9631.17329.1 ID=mRNA_H-paniculata_contig9631.17329.1|Name=mRNA_H-paniculata_contig9631.17329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig9631:1425..2785- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACCTTACAA TGCAGACATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCT TCACGTGCAACAAGCGTGTACTGGTGGACGATCTCAACGGCAACAGCAGC GGTCCCGTCAGAGCAGCCCTCCCAGTGATGAACGACATACCTGTGGAGAG TGCCAAGATGATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATC TACCTTACAATGCAGACATGGTGATGTTGGCACACAACGACCCGGGTGAC GGGGCAGGCTTCACGTGCAACAAGCGTGTACTGGTGGACGATCTCAACGG CAACAGCAGCGGTCCCGTCAGAGCAGCCCTCCCAGTGATGAACGACATAC CTGTGGAGAGTGCCAAGATG back to top
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