mRNA_H-paniculata_contig9631.17329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9631.17329.1
Unique NamemRNA_H-paniculata_contig9631.17329.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9631.17329.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.380e-10
Identity = 43/93 (46.24%), Postives = 52/93 (55.91%), Query Frame = 2 
Query:  143 LAGALTHASVRLHVEDHPLLLQYKGMRAGRTSQNAVNHLPYNADMVMLAHNDPGDGAGFTCNKRVLVDDLNGNSSGPVRAALPVMNDIPVESA 421
            L  A+  A V L VEDHPL+L Y     GR    A NHL  + DMV+L HN+   GA FTCNKRV VDD  G  S     ++ +M D+  E A
Sbjct:  409 LQEAVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAENHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSD-ASPSMQLMTDVEYEGA 497
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9631.17329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE1.380e-1046.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9631contigH-paniculata_contig9631:1425..2785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9631.17329.1prot_H-paniculata_contig9631.17329.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9631 1425..1634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931195.0521064-CDS-H-paniculata_contig9631:1424..16341622931195.0521064-CDS-H-paniculata_contig9631:1424..1634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9631 1425..1634 -
1691481633.1140208-CDS-H-paniculata_contig9631:1424..16341691481633.1140208-CDS-H-paniculata_contig9631:1424..1634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9631 1425..1634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931195.068044-UTR-H-paniculata_contig9631:1634..17021622931195.068044-UTR-H-paniculata_contig9631:1634..1702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9631 1635..1702 -
1691481633.1288326-UTR-H-paniculata_contig9631:1634..17021691481633.1288326-UTR-H-paniculata_contig9631:1634..1702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9631 1635..1702 -
1622931195.0885327-UTR-H-paniculata_contig9631:2636..27851622931195.0885327-UTR-H-paniculata_contig9631:2636..2785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9631 2637..2785 -
1691481633.1433387-UTR-H-paniculata_contig9631:2636..27851691481633.1433387-UTR-H-paniculata_contig9631:2636..2785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9631 2637..2785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9631.17329.1

>prot_H-paniculata_contig9631.17329.1 ID=prot_H-paniculata_contig9631.17329.1|Name=mRNA_H-paniculata_contig9631.17329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MRAGRTSQNAVNHLPYNADMVMLAHNDPGDGAGFTCNKRVLVDDLNGNSS
GPVRAALPVMNDIPVESAKM
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mRNA from alignment at H-paniculata_contig9631:1425..2785-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9631.17329.1 ID=mRNA_H-paniculata_contig9631.17329.1|Name=mRNA_H-paniculata_contig9631.17329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1361bp|location=Sequence derived from alignment at H-paniculata_contig9631:1425..2785- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAGAAAGGGAAGAAGAAGGCTTGCGACAGTGCAGACTCCTCTGAGCA
ACCTGTGAAGAAGAAAGCCCGGAAGACTACTTCTGCGACCGTTCGTCCTC
TTGCTGTTGCTGGTGCCAGCAACTCTTCTGCGTTGGTGAACGCTTGCAGG
TACAGTTTGGGGACGAATAAATGTCGTTGTGTTGCTTTCTATGGATGGTA
GACTTTGTTGTCATCATCAGGTAGGTAGTCAGTCTGCCTCTGTTGCTTGC
ATGTTTTACTTGTTAATCTTCCTCATATCAACTTGCATTACACCTGGCGT
CAAAGTACAGGAGCTCCGTTACATGTAGACTACATGAGACTGCTTCATGT
CTTCTACATGAATCACTGCATACTTGTTCACAACAGTGTGTCCTCCATGG
ATTTCGCTTCACGATAATGATGACTGGCGTGCACGATCCCTAAACATCTA
CTACGCACTCCTATTCGTTGCCGCTACGAAGGATCGAGAACGTTGTTATT
CATGATGGGGTGCCTCTTGCAGCTGGGTCGGCGGCCATGACAGAGGGGAG
TCTGTCCACCAAGTGTGCGGCCAAATTGGTGGTTATCTCCATTGCAGGAG
ACAAGACCCTCCTCAACCCTTCTACATCAACCGACGCCCGACTGAACAAG
CTATTCCAATCCGTGAAAGACAGCCTGCACCCCCGTGGAACTGTTGCAAT
CATGGGACCTCACCCTTGGCATCTGCACGCTGGACTCATCCACGGTGAGT
ATTTTGTCTTTGCTGTTTGTGCAACTTCATAAAAAATACGCCATTGCTGT
AACATGGAAGCCCATCGACCGCTTCAGCCCACTATACCTAATGGTTTATG
GGAGGAGAAAGTAGCGTGTACACGGCATAATAGAGTGTGCAACATGATTA
CATCAAGGTGTAATGTGAACGTGCGATTGGGGTATCACTGGACGTCCATT
CTACGTTTTTTCACATGTTGCACGATAAACTCCGCCTGCTGAGGCATATG
AACGACCACGGAGGTATTGGAGCACACATATATCGGGTGTATTCCAAACA
TGCATTCCGTCGACTTTCTTACTGTGTTTGCAGGTGCTCTGACCCATGCA
TCGGTAAGATTGCACGTTGAGGATCACCCACTTCTCCTCCAGTACAAGGG
TATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACCTTACA
ATGCAGACATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGC
TTCACGTGCAACAAGCGTGTACTGGTGGACGATCTCAACGGCAACAGCAG
CGGTCCCGTCAGAGCAGCCCTCCCAGTGATGAACGACATACCTGTGGAGA
GTGCCAAGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig9631:1425..2785-

>mRNA_H-paniculata_contig9631.17329.1 ID=mRNA_H-paniculata_contig9631.17329.1|Name=mRNA_H-paniculata_contig9631.17329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig9631:1425..2785- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACCTTACAA
TGCAGACATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCT
TCACGTGCAACAAGCGTGTACTGGTGGACGATCTCAACGGCAACAGCAGC
GGTCCCGTCAGAGCAGCCCTCCCAGTGATGAACGACATACCTGTGGAGAG
TGCCAAGATGATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATC
TACCTTACAATGCAGACATGGTGATGTTGGCACACAACGACCCGGGTGAC
GGGGCAGGCTTCACGTGCAACAAGCGTGTACTGGTGGACGATCTCAACGG
CAACAGCAGCGGTCCCGTCAGAGCAGCCCTCCCAGTGATGAACGACATAC
CTGTGGAGAGTGCCAAGATG
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