Homology
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match:
A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)
HSP 1 Score: 70.1 bits (170), Expect = 1.200e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query: 9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVE-QVKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
G+ +DKS++R+ V +RED Y + + DG Q+KG +L+VD G H+W L+ P+K + +LA+SKRLESVRKD
Sbjct: 40 GSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKD 122
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match:
A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)
HSP 1 Score: 70.1 bits (170), Expect = 3.550e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query: 9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVE-QVKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
G+ +DKS++R+ V +RED Y + + DG Q+KG +L+VD G H+W L+ P+K + +LA+SKRLESVRKD
Sbjct: 281 GSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKD 363
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match:
A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)
HSP 1 Score: 62.8 bits (151), Expect = 1.250e-9
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 3
Query: 9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQVK-GVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
GA +DK+++R+ V +R Y KLR +G ++++ G LIVD G H W L+ P+K E+ A+S+ LESVRKD
Sbjct: 159 GATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKD 241
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match:
A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)
HSP 1 Score: 60.5 bits (145), Expect = 5.490e-9
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 3
Query: 9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQVK-GVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
GA +DK+++R+ V +R + Y KLR +G E+ + G LI+D H W L+ P+K + ++ A+S+ LESVRKD
Sbjct: 40 GATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKD 122
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match:
D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)
HSP 1 Score: 59.7 bits (143), Expect = 1.280e-8
Identity = 30/83 (36.14%), Postives = 52/83 (62.65%), Query Frame = 3
Query: 9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQ-VKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
G+ +DK+ + + V+ +R D+ Y + ++DG +KG +++VD G H+W+ L+ P+K + +L +SKRLESVRKD
Sbjct: 83 GSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKD 165
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match:
A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)
HSP 1 Score: 58.9 bits (141), Expect = 2.740e-8
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = 3
Query: 9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQ-VKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
G+ +DK+++ + V +R D+ Y L ++DG +KG + + D G H+W+ L+ P+K + ++L +SKRLESVRKD
Sbjct: 128 GSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKD 210
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match:
A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)
HSP 1 Score: 56.6 bits (135), Expect = 1.940e-7
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 3
Query: 12 AVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQ-VKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
+ +DK+ + + V+ +R D Y + ++DG +KG +L+VD G H+W+ L+ P K + ++ +SKRLESVRKD
Sbjct: 224 STNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKD 305
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match:
A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)
HSP 1 Score: 52.0 bits (123), Expect = 8.390e-6
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3
Query: 51 VQAVREDEPYRSMACKLRDKDGVEQ-VKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
V+ +R D+ Y + ++DG +KG +L+VD G H+W+ L+ P+K + +L +SKRL+SVR+D
Sbjct: 273 VEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRD 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 8
0 1 Expect = 1.20e-12 / Id = 43.37 Expect = 3.55e-12 / Id = 43.37 Expect = 1.25e-9 / Id = 39.76 Expect = 5.49e-9 / Id = 37.35 Expect = 1.28e-8 / Id = 36.14 Expect = 2.74e-8 / Id = 36.14 Expect = 1.94e-7 / Id = 35.37 Expect = 8.39e-6 / Id = 37.68 Sequence A0A6H5JTC6_9PHAE A0A6H5JAU4_9PHAE A0A6H5K796_9PHAE A0A6H5JQM6_9PHAE D7FSK2_ECTSI A0A6H5JUX7_9PHAE A0A6H5JHI0_9PHAE A0A6H5L0X4_9PHAE back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig963.17326.1
>prot_H-paniculata_contig963.17326.1 ID=prot_H-paniculata_contig963.17326.1|Name=mRNA_H-paniculata_contig963.17326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MAGAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQVKGVHLIVD back to top mRNA from alignment at H-paniculata_contig963:2046..2898-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig963.17326.1 ID=mRNA_H-paniculata_contig963.17326.1|Name=mRNA_H-paniculata_contig963.17326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at H-paniculata_contig963:2046..2898- (Halopteris paniculata Hal_grac_a_UBK monoicous)GA ATGGCCGGAGCAGTGAGCGATAAATCCGTCCTTCGTTTCCGCAAGACG
GTACAAGCGGTCAGGGAAGATGAGCCGTACAGGTCGATGGCTTGTAAGCT
CCGCGATAAGGACGGTGTGGAACAGGTGAAGGGTGTTCACCTCATCGTGG
ACGGAGGATGTCACCGG GTGAGTCAACTGCTGTCGTTTGATGGTCATTGC
TGCTGCACCACCGTACAGAAATGCGTTGTATAGTTTCACATCATGCGGCG
ACGTTTTCTTCGTTTCTGACAAGCATGCCCCGTTTAGTGTTGTGTATCAA
CCACACCCCGCTTGCGATGTATAACTTTGTTGATCCCAACATAAATGGCT
GCCCGAGGTCCTACTTTGTGAGCCGCAATTCTAGACTCACCGTACATTCG
TTTCAAATATTTTTTGCAAACTAGGAGACAACAAGCTTCCTTGACATAAG
TAGCAGCTACGCGAAATCCGTAGGTCGCACCATGTGGCGTATCTTGTTTG
AAGAACAGGCCATGCCACGGTTCACAAGGAATTTGCTAGGATGATAAGAC
GCTTCTGTATCTTTTTTTATGGTCGGTTTCAACCGTCGGTGTTGTTGAAT
GCAATCTTCAGCTTCAATTTTCTTCGTATCGCTGATTGATCATTGATCAA
GACTGAGATAAATCGTACGAGCTGGGCGTTTCAATATCTGGCACAGTTGG
TCAGAAGCCGCATACGAACAACGTGTATCGACACTACTGTTTTCTCGCTT
CCCCTCTTATTTGCAGTGGAGGAATTTAGTGTGCCCGGCAAAAGAAGCTG
CAACTCGAGAGGAATTAGCGTGGAGTAAACGTCTCGAGAGCGTTCGAAAG
GAC back to top Coding sequence (CDS) from alignment at H-paniculata_contig963:2046..2898-
>mRNA_H-paniculata_contig963.17326.1 ID=mRNA_H-paniculata_contig963.17326.1|Name=mRNA_H-paniculata_contig963.17326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig963:2046..2898- (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top