mRNA_H-paniculata_contig963.17326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig963.17326.1
Unique NamemRNA_H-paniculata_contig963.17326.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3 
Query:    9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVE-QVKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
            G+ +DKS++R+   V  +RED  Y      + + DG   Q+KG +L+VD G H+W  L+ P+K    + +LA+SKRLESVRKD
Sbjct:   40 GSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKD 122
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BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.550e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3 
Query:    9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVE-QVKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
            G+ +DKS++R+   V  +RED  Y      + + DG   Q+KG +L+VD G H+W  L+ P+K    + +LA+SKRLESVRKD
Sbjct:  281 GSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKD 363
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BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.250e-9
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 3 
Query:    9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQVK-GVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
            GA +DK+++R+   V  +R    Y     KLR  +G ++++ G  LIVD G H W  L+ P+K     E+ A+S+ LESVRKD
Sbjct:  159 GATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKD 241
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BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.490e-9
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 3 
Query:    9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQVK-GVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
            GA +DK+++R+   V  +R +  Y     KLR  +G E+ + G  LI+D   H W  L+ P+K   + ++ A+S+ LESVRKD
Sbjct:   40 GATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKD 122
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BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.280e-8
Identity = 30/83 (36.14%), Postives = 52/83 (62.65%), Query Frame = 3 
Query:    9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQ-VKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
            G+ +DK+ + +   V+ +R D+ Y      + ++DG    +KG +++VD G H+W+ L+ P+K   +  +L +SKRLESVRKD
Sbjct:   83 GSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKD 165
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BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.740e-8
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = 3 
Query:    9 GAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQ-VKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
            G+ +DK+++ +   V  +R D+ Y      L ++DG    +KG + + D G H+W+ L+ P+K   + ++L +SKRLESVRKD
Sbjct:  128 GSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKD 210
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BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.940e-7
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 3 
Query:   12 AVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQ-VKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
            + +DK+ + +   V+ +R D  Y      + ++DG    +KG +L+VD G H+W+ L+ P K   +  ++ +SKRLESVRKD
Sbjct:  224 STNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKD 305
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BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 8.390e-6
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3 
Query:   51 VQAVREDEPYRSMACKLRDKDGVEQ-VKGVHLIVDGGCHRWRNLVCPAKEAATREELAWSKRLESVRKD 254
            V+ +R D+ Y      + ++DG    +KG +L+VD G H+W+ L+ P+K   +  +L +SKRL+SVR+D
Sbjct:  273 VEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRD 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig963.17326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JTC6_9PHAE1.200e-1243.37DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE3.550e-1243.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE1.250e-939.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE5.490e-937.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI1.280e-836.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUX7_9PHAE2.740e-836.14DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE1.940e-735.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE8.390e-637.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig963contigH-paniculata_contig963:2046..2898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size256
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig963.17326.1prot_H-paniculata_contig963.17326.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig963 2046..2896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.7258952-CDS-H-paniculata_contig963:2045..21321622931194.7258952-CDS-H-paniculata_contig963:2045..2132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig963 2046..2132 -
1691481632.93298-CDS-H-paniculata_contig963:2045..21321691481632.93298-CDS-H-paniculata_contig963:2045..2132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig963 2046..2132 -
1622931194.7444584-CDS-H-paniculata_contig963:2731..28961622931194.7444584-CDS-H-paniculata_contig963:2731..2896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig963 2732..2896 -
1691481632.9480708-CDS-H-paniculata_contig963:2731..28961691481632.9480708-CDS-H-paniculata_contig963:2731..2896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig963 2732..2896 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.7665224-UTR-H-paniculata_contig963:2896..28981622931194.7665224-UTR-H-paniculata_contig963:2896..2898Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig963 2897..2898 -
1691481632.9576027-UTR-H-paniculata_contig963:2896..28981691481632.9576027-UTR-H-paniculata_contig963:2896..2898Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig963 2897..2898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig963.17326.1

>prot_H-paniculata_contig963.17326.1 ID=prot_H-paniculata_contig963.17326.1|Name=mRNA_H-paniculata_contig963.17326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MAGAVSDKSVLRFRKTVQAVREDEPYRSMACKLRDKDGVEQVKGVHLIVD
GGCHRWRNLVCPAKEAATREELAWSKRLESVRKD
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mRNA from alignment at H-paniculata_contig963:2046..2898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig963.17326.1 ID=mRNA_H-paniculata_contig963.17326.1|Name=mRNA_H-paniculata_contig963.17326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at H-paniculata_contig963:2046..2898- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATGGCCGGAGCAGTGAGCGATAAATCCGTCCTTCGTTTCCGCAAGACG
GTACAAGCGGTCAGGGAAGATGAGCCGTACAGGTCGATGGCTTGTAAGCT
CCGCGATAAGGACGGTGTGGAACAGGTGAAGGGTGTTCACCTCATCGTGG
ACGGAGGATGTCACCGGGTGAGTCAACTGCTGTCGTTTGATGGTCATTGC
TGCTGCACCACCGTACAGAAATGCGTTGTATAGTTTCACATCATGCGGCG
ACGTTTTCTTCGTTTCTGACAAGCATGCCCCGTTTAGTGTTGTGTATCAA
CCACACCCCGCTTGCGATGTATAACTTTGTTGATCCCAACATAAATGGCT
GCCCGAGGTCCTACTTTGTGAGCCGCAATTCTAGACTCACCGTACATTCG
TTTCAAATATTTTTTGCAAACTAGGAGACAACAAGCTTCCTTGACATAAG
TAGCAGCTACGCGAAATCCGTAGGTCGCACCATGTGGCGTATCTTGTTTG
AAGAACAGGCCATGCCACGGTTCACAAGGAATTTGCTAGGATGATAAGAC
GCTTCTGTATCTTTTTTTATGGTCGGTTTCAACCGTCGGTGTTGTTGAAT
GCAATCTTCAGCTTCAATTTTCTTCGTATCGCTGATTGATCATTGATCAA
GACTGAGATAAATCGTACGAGCTGGGCGTTTCAATATCTGGCACAGTTGG
TCAGAAGCCGCATACGAACAACGTGTATCGACACTACTGTTTTCTCGCTT
CCCCTCTTATTTGCAGTGGAGGAATTTAGTGTGCCCGGCAAAAGAAGCTG
CAACTCGAGAGGAATTAGCGTGGAGTAAACGTCTCGAGAGCGTTCGAAAG
GAC
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Coding sequence (CDS) from alignment at H-paniculata_contig963:2046..2898-

>mRNA_H-paniculata_contig963.17326.1 ID=mRNA_H-paniculata_contig963.17326.1|Name=mRNA_H-paniculata_contig963.17326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig963:2046..2898- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGGAGCAGTGAGCGATAAATCCGTCCTTCGTTTCCGCAAGACGGT
ACAAGCGGTCAGGGAAGATGAGCCGTACAGGTCGATGGCTTGTAAGCTCC
GCGATAAGGACGGTGTGGAACAGGTGAAGGGTGTTCACCTCATCGTGGAC
GGAGGATGTCACCGGATGGCCGGAGCAGTGAGCGATAAATCCGTCCTTCG
TTTCCGCAAGACGGTACAAGCGGTCAGGGAAGATGAGCCGTACAGGTCGA
TGGCTTGTAAGCTCCGCGATAAGGACGGTGTGGAACAGGTGAAGGGTGTT
CACCTCATCGTGGACGGAGGATGTCACCGGTGGAGGAATTTAGTGTGCCC
GGCAAAAGAAGCTGCAACTCGAGAGGAATTAGCGTGGAGTAAACGTCTCG
AGAGCGTTCGAAAGGACTGGAGGAATTTAGTGTGCCCGGCAAAAGAAGCT
GCAACTCGAGAGGAATTAGCGTGGAGTAAACGTCTCGAGAGCGTTCGAAA
GGAC
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