mRNA_H-paniculata_contig9629.17325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: D7FIH1_ECTSI (Eukaryotic translation initiation factor 4E like2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH1_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 3.630e-113
Identity = 160/184 (86.96%), Postives = 168/184 (91.30%), Query Frame = 3

Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAATQRQ 554
            YDKKMPKK QDQT YQASLHK GSFNT+EGFWKNYVHLKRPS I  NVN+YLFRD  GHVPMWERYPNGGCWILRIRKK+GQTNTSVLGKMWQDLVLAV+GEMFEEPNVVGIGMAIRSREDLLSVWNEDNSN +VRF IGE LKQVLDLE STLIEYKHH+ AMQDMSTFRNA+AY FA T+ Q
Sbjct:   38 YDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVTKGQ 221

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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A8K1CP93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP93_PYTOL)

HSP 1 Score: 241 bits (614), Expect = 3.800e-75
Identity = 113/180 (62.78%), Postives = 144/180 (80.00%), Query Frame = 3

Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
            YDKK+PKK  D   YQ++L K+ +F+TVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +PNGGCWIL+I+KKA     +VLGKMWQDLV A +GE FEE +VVGI MAIRS+ED++SVWN DNSN E RF IGE LK++L L+A+TLIEYK H  +++DMSTFRNA+ YVFAA
Sbjct:   32 YDKKLPKKI-DVGTYQSNLQKIAAFSTVEDFWRHYIHIKRPSQLNRDVNLYLFRDRPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQDLVFAAVGEAFEELDVVGIAMAIRSKEDMISVWNADNSNEETRFKIGEKLKEILMLDANTLIEYKFHANSIKDMSTFRNAKPYVFAA 205

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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A836CBD6_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD6_9STRA)

HSP 1 Score: 241 bits (615), Expect = 5.020e-75
Identity = 117/184 (63.59%), Postives = 141/184 (76.63%), Query Frame = 3

Query:    3 YDKKMPKKAQ-DQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNS-NPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAATQ 548
            YDKK  K    D   Y+A+LHKV +F+TVE FW+ Y H+KRPS +  N+N+Y FRD     P WE +PNGGCWIL+I+K+A  + TSVLGKMWQDLV A IGE FEEP VVG+GMA+RS+EDLLSVWN DNS N  VRFAIGE LK +LDLE ST+IEYKH   +M+DMST+R+A+ YVFAA Q
Sbjct:   44 YDKKHKKGGTGDYNEYKANLHKVHTFSTVEDFWRLYTHIKRPSALENNINMYFFRDAPNSSPSWESFPNGGCWILKIKKRA-HSGTSVLGKMWQDLVFAAIGECFEEPTVVGVGMAVRSKEDLLSVWNSDNSGNDAVRFAIGEKLKAILDLEPSTMIEYKHFASSMEDMSTYRHAKPYVFAAAQ 226

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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A024TXL0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXL0_9STRA)

HSP 1 Score: 239 bits (609), Expect = 1.650e-74
Identity = 110/181 (60.77%), Postives = 146/181 (80.66%), Query Frame = 3

Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
            +DKKMPK+  D + YQ++L K+ +FNTVE FW++Y+H+KRPS++  + N+YLFRD     PMWE +PNGGCWIL+I+KKA     +VLGKMWQDL+ AVIGE FE  NVVGI MA+RS+ED++SVWN DNS+  +RFAIGE LK++L L+++TLIEYK H  +++DMSTFRNA+ YVFAA+
Sbjct:   25 FDKKMPKRT-DVSTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLAKDTNLYLFRDQPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNIRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAS 199

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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: D0N871_PHYIT (Eukaryotic initiation factor 4E, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N871_PHYIT)

HSP 1 Score: 238 bits (606), Expect = 5.340e-74
Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 3

Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
            YDKKMPKK  D   YQ++L K+ +FNTVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +P GGCWIL+I+KKA     +VLGKMWQDLV A IGE FE+ +VVGI MAIRS+ED+LSVWN DNS+   RFAIGE LK++L L+++TL+EYK H  +++DMSTFRNA+ YVFAA
Sbjct:   26 YDKKMPKKI-DVGTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 199

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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: W2PGT1_PHYPN (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=W2PGT1_PHYPN)

HSP 1 Score: 238 bits (606), Expect = 7.420e-74
Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 3

Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
            YDKKMPKK  D   YQ++L K+ +FNTVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +P GGCWIL+I+KKA     +VLGKMWQDLV A IGE FE+ +VVGI MAIRS+ED+LSVWN DNS+   RFAIGE LK++L L+++TL+EYK H  +++DMSTFRNA+ YVFAA
Sbjct:   36 YDKKMPKKI-DVGTYQSNLQKIATFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 209

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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: D0P4V5_PHYIT (Eukaryotic initiation factor 4E, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0P4V5_PHYIT)

HSP 1 Score: 238 bits (606), Expect = 1.060e-73
Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 3

Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
            YDKKMPKK  D   YQ++L K+ +FNTVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +P GGCWIL+I+KKA     +VLGKMWQDLV A IGE FE+ +VVGI MAIRS+ED+LSVWN DNS+   RFAIGE LK++L L+++TL+EYK H  +++DMSTFRNA+ YVFAA
Sbjct:   47 YDKKMPKKI-DVGTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 220

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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: K3WZ97_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ97_GLOUD)

HSP 1 Score: 234 bits (598), Expect = 8.010e-73
Identity = 111/181 (61.33%), Postives = 141/181 (77.90%), Query Frame = 3

Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
            YDKK+PKK  D   YQ++L K+  FNTVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +P GGCWIL+I+KKA     +VLGKMWQDLV A IGE+F   +VVGI MAIRS+ED+LSVWN DNS+   RF IGE LK++L L+++TLIEYK H  +++DMSTFRNA+ YVFAAT
Sbjct:   29 YDKKLPKKI-DVGTYQSNLQKIAQFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEVFASRDVVGIAMAIRSKEDMLSVWNADNSDDSTRFEIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAT 203

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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: F0W9A8_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9A8_9STRA)

HSP 1 Score: 233 bits (593), Expect = 5.170e-72
Identity = 108/181 (59.67%), Postives = 144/181 (79.56%), Query Frame = 3

Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
            YDKK+P+   D   Y+++LH++ +F+TVE FW++YVHLKRPS++  ++N+Y+FRD     PMWE +P+GGCWIL+I+KKA     +VLGKMWQDLV A IGE+F + NVVGI MAIRS+ED+LSVWN DNS   VRF+IGE LK++L L+ +TLIEYK H  +++DMSTFRNA++YVFA T
Sbjct:   26 YDKKLPRNV-DVGTYRSNLHRIATFSTVEDFWRHYVHLKRPSELHRDINLYMFRDLPKCAPMWEAFPHGGCWILKIKKKA-----NVLGKMWQDLVFAAIGELFGQANVVGIAMAIRSKEDMLSVWNADNSEDSVRFSIGEKLKEILMLDPNTLIEYKFHANSIRDMSTFRNAKSYVFATT 200

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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A485KQ57_9STRA (Aste57867_10365 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ57_9STRA)

HSP 1 Score: 233 bits (593), Expect = 1.620e-71
Identity = 109/181 (60.22%), Postives = 145/181 (80.11%), Query Frame = 3

Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
            +DKKMPK+  D + YQ++L K+ +F+TVE FW++Y+H+KRPS++  + N+YLFRD     PMWE +PNGG WIL+I+KKA     +VLGKMWQDL+ AVIGE FE  NVVGI MA+RS+ED++SVWN DNS+  VRFAIGE LK++L L+++TLIEYK H  +++DMSTFRNA+ YVFAA+
Sbjct:   68 FDKKMPKRT-DVSTYQSNLQKIANFSTVEDFWRHYIHVKRPSQLSKDTNLYLFRDQPNCAPMWEAFPNGGGWILKIKKKA-----NVLGKMWQDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNVRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAS 242

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D7FIH1_ECTSI	3.630e-113	86.96	Eukaryotic translation initiation factor 4E like2 ...	[more]
A0A8K1CP93_PYTOL	3.800e-75	62.78	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A836CBD6_9STRA	5.020e-75	63.59	Putative eukaryotic initiation factor 4E n=1 Tax=T...	[more]
A0A024TXL0_9STRA	1.650e-74	60.77	Uncharacterized protein n=3 Tax=Aphanomyces TaxID=...	[more]
D0N871_PHYIT	5.340e-74	62.22	Eukaryotic initiation factor 4E, putative n=1 Tax=...	[more]
W2PGT1_PHYPN	7.420e-74	62.22	Uncharacterized protein n=22 Tax=Peronosporaceae T...	[more]
D0P4V5_PHYIT	1.060e-73	62.22	Eukaryotic initiation factor 4E, putative n=2 Tax=...	[more]
K3WZ97_GLOUD	8.010e-73	61.33	Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4...	[more]
F0W9A8_9STRA	5.170e-72	59.67	Eukaryotic initiation factor 4E putative n=1 Tax=A...	[more]
A0A485KQ57_9STRA	1.620e-71	60.22	Aste57867_10365 protein n=1 Tax=Aphanomyces stella...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	330.9
Seed ortholog evalue	4e-88
Seed eggNOG ortholog	2880.D7FIH1
KEGG ko	ko:K03259
KEGG Pathway	ko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG Module	M00428
Hectar predicted targeting category	other localisation
EggNOG free text desc.	translation initiation factor activity
EggNOG OGs	COG5053@1,KOG1669@2759
Ec32 ortholog description	eukaryotic translation initiation factor 4E like2
Ec32 ortholog	Ec-28_000250.1
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03012,ko03019
Exons	6
Model size	1150
Cds size	573
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig9629.17325.1	prot_H-paniculata_contig9629.17325.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig9629 4543..8788 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931194.450264-UTR-H-paniculata_contig9629:3979..4542	1622931194.450264-UTR-H-paniculata_contig9629:3979..4542	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9629 3980..4542 -
1691481632.7877073-UTR-H-paniculata_contig9629:3979..4542	1691481632.7877073-UTR-H-paniculata_contig9629:3979..4542	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9629 3980..4542 -
1622931194.584657-UTR-H-paniculata_contig9629:8788..8802	1622931194.584657-UTR-H-paniculata_contig9629:8788..8802	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9629 8789..8802 -
1691481632.8673115-UTR-H-paniculata_contig9629:8788..8802	1691481632.8673115-UTR-H-paniculata_contig9629:8788..8802	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9629 8789..8802 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931194.475749-CDS-H-paniculata_contig9629:4542..4615	1622931194.475749-CDS-H-paniculata_contig9629:4542..4615	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 4543..4615 -
1691481632.8031714-CDS-H-paniculata_contig9629:4542..4615	1691481632.8031714-CDS-H-paniculata_contig9629:4542..4615	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 4543..4615 -
1622931194.4960396-CDS-H-paniculata_contig9629:5469..5579	1622931194.4960396-CDS-H-paniculata_contig9629:5469..5579	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 5470..5579 -
1691481632.8140585-CDS-H-paniculata_contig9629:5469..5579	1691481632.8140585-CDS-H-paniculata_contig9629:5469..5579	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 5470..5579 -
1622931194.5155754-CDS-H-paniculata_contig9629:6328..6451	1622931194.5155754-CDS-H-paniculata_contig9629:6328..6451	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 6329..6451 -
1691481632.8234518-CDS-H-paniculata_contig9629:6328..6451	1691481632.8234518-CDS-H-paniculata_contig9629:6328..6451	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 6329..6451 -
1622931194.5348744-CDS-H-paniculata_contig9629:6843..6930	1622931194.5348744-CDS-H-paniculata_contig9629:6843..6930	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 6844..6930 -
1691481632.8321323-CDS-H-paniculata_contig9629:6843..6930	1691481632.8321323-CDS-H-paniculata_contig9629:6843..6930	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 6844..6930 -
1622931194.5557325-CDS-H-paniculata_contig9629:7548..7677	1622931194.5557325-CDS-H-paniculata_contig9629:7548..7677	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 7549..7677 -
1691481632.841435-CDS-H-paniculata_contig9629:7548..7677	1691481632.841435-CDS-H-paniculata_contig9629:7548..7677	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 7549..7677 -
1622931194.5721204-CDS-H-paniculata_contig9629:8737..8788	1622931194.5721204-CDS-H-paniculata_contig9629:8737..8788	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 8738..8788 -
1691481632.8515868-CDS-H-paniculata_contig9629:8737..8788	1691481632.8515868-CDS-H-paniculata_contig9629:8737..8788	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9629 8738..8788 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig9629:3980..8802-
coding sequence from alignment at H-paniculata_contig9629:3980..8802-

protein sequence of mRNA_H-paniculata_contig9629.17325.1

>prot_H-paniculata_contig9629.17325.1 ID=prot_H-paniculata_contig9629.17325.1|Name=mRNA_H-paniculata_contig9629.17325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFR
DGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMF
EEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTL
IEYKHHEVAMQDMSTFRNAQAYVFAATQRQGQGQAQQQQG*

mRNA from alignment at H-paniculata_contig9629:3980..8802-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig9629.17325.1 ID=mRNA_H-paniculata_contig9629.17325.1|Name=mRNA_H-paniculata_contig9629.17325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4823bp|location=Sequence derived from alignment at H-paniculata_contig9629:3980..8802- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTATGACAAGAAGATGCCAAAGAAGGCCCAGGACCAAACGGCTTACCAA
GCCTCCCTTCACAAGGTATGCAATGGTCAACGGTGAGCTTACGCTTGTAA
TGGAGTGGTACTTGCAATTTGTTGGTTATTTCGTCACACCTGCGCTGATT
TGGAGCAGAGCAATGATGGGCGATGCGCACTATCAAGGGTCCCCTAGGGA
AAAATAGGTACCAATCAAAGCATGACCGTGGCAAAAATGGTTACTACGGT
GTCGAAACACTGGGAAACGTGAAGAACAAATAGAACTATTGATATTGTAG
TAGCTGGTTGTTTTGGTAAATTTGTGCTCCATGTCTTGGTAAACCCAACT
ACTGGTGGACATAAGACTACAATTTGAAACTACGACAAGTCGTTCGCCAA
GAAATTGCCAATATCGTCTGACTGACCTCATGAATGAAGAGGGTTGAAAA
CGTTGAACGTTTTCCCTACGCGTAGCGGTCCATGTCCGTGTCCGCGAATG
CGGTGCTTTGAATCTATGAGGTTGCGACGTTGAACATAGTATAATCGTTT
GAATGTGATTGAGATTGTGGTTGTGACTGCGATTGCTCGGGGTCCTATGG
CAATAATCGAGCCCCATCACGCCGCAGTTAGGGTTTGAACACCATCTATT
ACTACATACATATTCCAAGTTCTGAATGTGCAACCGATGATGATGGTGAT
ATGATGATGACGTTCCTCTCAGAATAGTGTGCACCTTTCTTTTTATCCAA
GTGAATTAAAAAAAATGTCACGTAACACATAGAATATGACACGGTTAGGA
CCAAGCTGACTTGTAAGGATATTGATACGTCCCACGTGTGGGATAATCTA
TGATACGCATACATTAGTGTCGACCGTTTAGATCTACTACCAAGGCAGCG
AGCCATGGTTCGTGACTCGCGTCATGCGTTTCATTCGCACTGTTTTCCCT
ACACTTTACTTACTTATCAGACCTGCGCGTCAACGACTACAAGGACAAAG
CACTAGAGGATGACCACATGGGCGTAGCCCCGACCTAGCTGAAGTCCTAA
TAAACGCAAAACTAAGGACACGGCTTACAAGTGCGAGCTCAGGCGTGACC
GTGTTTGTGGTTTTCCGAATATTAGGTGGGAAGCTTCAATACGGTGGAAG
GCTTTTGGAAGAACTACGTGCACCTGAAGCGGCCGTCGAAGATCGGCACC
AACGTGAATATATACCTGTTCAGAGACGGACATGGCCATGTACCCATGTG
GGAGGCAAGCACTTTTTTTCAGTTTTGATACCTATCTGCATGAGACGTTG
AAAACGTCTTACTTCACGGTGTTGCCATTTGAATTTTCATTATGCGAGTA
GTGTCACGGCCGCTTCACCCGTGCAATTAGTTCGTGCTGGCTCGTTATCG
ACCCACGAACTCGCGGCGCTCGCAATGTCTCGCCCAGCTCGCATGAAGAT
TCGTAAAGTTAAAGAGTAAGTTACTATGGTACTTAATTGAAAAAAATGTT
CCGAAATAACAAGCAGTTTACTAATACCGTAGTACTGAATTCTTATAATG
CTACTGCCGAATGTTGTTCCATTTGGTGATAACAAAACAGGACTATGGAA
TGCTCAGCGCCTCTTCTAGGGTAGTGCTGTTTACTCACCAACTGCTTGAT
GCGTTTCATTCCTTGTTCGGTCTACTTGATCCTTTCGTTATCTTCTTTTA
TCTCAACTTTAATTTTCGATGCTACTGTTTCCCTTGTGTTGTATTCCACT
TTCATGGCGTGGTTGAGACTGTCTTGTTGTTGTTGTTGTTGTTGTTTCTA
TCTCACACGTTGCTAGTCTTGTGTAATTTTTTATATATTTCATGTGCTTA
TTTCATGCTCATGATTGGACAGCGGTACCCTAACGGAGGCTGCTGGATTC
TGCGCATCCGCAAGAAGGCTGGACAGACCAACACCAGCGTTTTGGGAAAG
ATGTGGCAGGTGTGTATGTAGCTTTCGCTCGTGTACCACGGTATTTTTTT
GTCGAGAGCATCTAAAGGAGCTGATCTTGACGGTTGTGTTGACAACATAA
AAGTTGTGCCCTGCCTGCAGTATATGTCATACTCTATTGCAAATGCGGAT
TTTCCGTTTCTGTTTGTAGATATTCTCAGTTAATGAGGAAAAACGGGGGA
GTCGAGACTCATGCATGGTAATCGAGTAGATCACTACCCCATCAGGTAGT
AGATCGAGGTAACGTGCTGTACGCTGTGCTCGCTTTTTGGGGGCATAATT
GTGATGCCTTTCTGATCTTGACAAAAAAAGTTTCCAAGTACATGTCTAGA
CCTTTTTCGATCGCCATTCTGACGACCCTGTGTTTTGCTGCTGCCGACCA
GGATTTGGTGCTGGCTGTGATTGGAGAAATGTTCGAGGAACCAAACGTCG
TAGGCATCGGCATGGCGATTCGATCACGAGAAGACCTCTTGTCCGTGTGG
AATGAAGACAACAGCAATCCCGAGGTCTTATGTCTCTTTAATTTCTAGTC
TTTATGTTCCACTTTATCGATGATCTCAAGTGTTCACAGAGGTCGCCAGT
CGGCTGTCACACATGACACGCGCTAGGGCCGATATCCTCGTGTTCTATGG
CTGTCTGTATGGCGATGTCAATACGTGGGTCAAGAGCATTTTCCAAAAAG
CAGGTCGGCAGTGAGCTACTCAGTCAGTCACATATATACATACATACTAT
ACATACTATGACTGACTGAGTAGTTCACTGGTGAGCTGCTTTCTTGACAA
TGCGGACGTCTCTTTCTGACTTGCTTTTGGTACAATGGACAGGTCAATTC
GTTGATGGGTTTCGTATCTCTAGGACACTTTCATCCATGGCATGGGATCG
CTTTTTTCCGGCGTTTGCTCTCTCTGGAAGTACCGCGCCTTCCATATCGA
AAGCAAGTGCAAAAAGTATATGTTCGTCGGGAGAACGAACCCACTCACGA
TAAACTTTTGTACAGAAAGCGGCTCACCAATAAGCTACTGAGTCAGAGTA
TTTTCCTATTGGGTCGTTGGTGACCATACGTTGTGTTGATTATTGATTGG
GTCGCTCGTGCTTCCTTCCTCTGATTGCACTGCCTCGCACTGGATTCACA
CCTAGTGTCTTACTTTTTGCTACATCCTGAAGGAATTATTTAATTGTGAG
TGGCATTCAACTGAATGTGAGATGATGCCGGAATTTCCAGTCAACCTCTC
AACTATTCTACATACATTCCCAGGTGAGGTTTGCCATCGGGGAGACGCTC
AAGCAGGTGCTCGACCTGGAAGCATCAACTCTCATCGAGTATAAACACCA
CGAGGTCGCCATGCAGGACATGTCCACTTTCAGGTATGAGCCAGTACGGG
ATGAAATATCCATAATACTGAATGATTGCGTACTGTGCTCGCTTCCCCTA
AGCAGTATTTTCCCATCTTTTGATTATCACAATAGCTCTGCCGTATTCAC
GAGAGCCCAGTGCTGGACCTGCTATGGTAACGTATGCCTTTATGACGCAT
GAGACGAGCCCCACGGCTAAGTATCAACCATCTACTGGGAAACTAAATCT
ATATAGGAAAATGGTCGGTATCAAAGCGCTCGTTTATTAATTTTTGGTTC
GTACCTGAGAAGATGTGTTGGTACGTTCTCGTACATAAAGAAACGGGTTT
CGAATTGGACGAAAGCTTTTTCCCTAGGACAGACAGGAATGGAGCATTCG
TAACTGTCTTGAGCTATCATTATTTGTCTTGGCTAAATACGCGTTTGTTC
GTAATTAGTCTATGAACGGCCACTCTACAGATAATCACCGGGTGGTCGTA
TACTCGGTGAAAAGCAGTCACACATGCAAATCCTGTCTATTTCACGGATG
GTATCGTACATATTGAATACTCGATCTGGCCGAGCTTTTCAATGCTCCAC
CGTATATCGAATACATTGCATATTATTCGCGTCACATGGACATCTTCCCC
AACTCAATTAGATACAGTATTCGTGTCTTGTATTAGTGTTTGTCAGGGCG
GTGAAGAATTTTATTCTCTAGTATTCTCAACTTTTGAAAATCTTGAACGC
CCTCTCTGCTCTCGAAGTAAACGAGCGTATTGTTCCTTTGTTGCCCGCGC
GATCATGTTAGTGGTGAGGCTAGGCTTCAAATATGTTGAAACGTGTGCTG
TTCTATTCGTTCTGCTGTCGTGACGATGATTGTACAGGAATGCCCAAGCT
TATGTTTTCGCCGCGACGCAAAGACAAGGACAAGGCCAAGCACAGCAGCA
GCAGGGGTAGATTTTCTACCTACATGTCTGCCAGTCTTTCGATAGCATCA
ACTTTTGCTGTTTTTTGAATCAGCTCTTGGAGGTTGCGTGCGCGACTTTC
TTAGTAATTGCAACTGCCTTGGGGTTATGGAGCGGCATACGTACAATGCA
TACATATAGCTGTGGAGACTGGCGTATGACGCGAGAACTGGTTGATCAAC
TGGTGGCCAAATTTTTCGGCGCTTCATCTACTAAGCTGGCACGTGTTGCA
TATGACAAACGTTGTAAAGTTTGAAGTTAACCTGTTTTGGGATTGAATTG
TTTAGTACTTACTGCATTGCTACCGTTTGTCGTATACTACTATTATTATT
ATACAGTCATCAGGGGTCAGGCACATAACATACGCCCTGAAAAAAAGACA
TTGCATAATGATCATTTCTCCGGTTGTACTTGCGACGTGTATCATTCCAA
CCTTGTAACCTCTCTACTCCCACCCACATGTATCGCCGATTTGGCAGAAT
TTGGATTTCGGAAATCATACCGCGGCGGATTGTTCATGGCCCGCTGTTAG
TGAAATAAGCATATCACTCGTAC

Coding sequence (CDS) from alignment at H-paniculata_contig9629:3980..8802-

>mRNA_H-paniculata_contig9629.17325.1 ID=mRNA_H-paniculata_contig9629.17325.1|Name=mRNA_H-paniculata_contig9629.17325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig9629:3980..8802- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAGAAGGCCCAGGACCAAACGGCTTACCAAGCCTCCCTTCACAA
GATGCCAAAGAAGGCCCAGGACCAAACGGCTTACCAAGCCTCCCTTCACA
AGGTGGGAAGCTTCAATACGGTGGAAGGCTTTTGGAAGAACTACGTGCAC
CTGAAGCGGCCGTCGAAGATCGGCACCAACGTGAATATATACCTGTTCAG
AGACGGACATGGCCATGTACCCATGTGGGAGGTGGGAAGCTTCAATACGG
TGGAAGGCTTTTGGAAGAACTACGTGCACCTGAAGCGGCCGTCGAAGATC
GGCACCAACGTGAATATATACCTGTTCAGAGACGGACATGGCCATGTACC
CATGTGGGAGCGGTACCCTAACGGAGGCTGCTGGATTCTGCGCATCCGCA
AGAAGGCTGGACAGACCAACACCAGCGTTTTGGGAAAGATGTGGCAGCGG
TACCCTAACGGAGGCTGCTGGATTCTGCGCATCCGCAAGAAGGCTGGACA
GACCAACACCAGCGTTTTGGGAAAGATGTGGCAGGATTTGGTGCTGGCTG
TGATTGGAGAAATGTTCGAGGAACCAAACGTCGTAGGCATCGGCATGGCG
ATTCGATCACGAGAAGACCTCTTGTCCGTGTGGAATGAAGACAACAGCAA
TCCCGAGGATTTGGTGCTGGCTGTGATTGGAGAAATGTTCGAGGAACCAA
ACGTCGTAGGCATCGGCATGGCGATTCGATCACGAGAAGACCTCTTGTCC
GTGTGGAATGAAGACAACAGCAATCCCGAGGTGAGGTTTGCCATCGGGGA
GACGCTCAAGCAGGTGCTCGACCTGGAAGCATCAACTCTCATCGAGTATA
AACACCACGAGGTCGCCATGCAGGACATGTCCACTTTCAGGTGAGGTTTG
CCATCGGGGAGACGCTCAAGCAGGTGCTCGACCTGGAAGCATCAACTCTC
ATCGAGTATAAACACCACGAGGTCGCCATGCAGGACATGTCCACTTTCAG
GAATGCCCAAGCTTATGTTTTCGCCGCGACGCAAAGACAAGGACAAGGCC
AAGCACAGCAGCAGCAGGGGTAGGAATGCCCAAGCTTATGTTTTCGCCGC
GACGCAAAGACAAGGACAAGGCCAAGCACAGCAGCAGCAGGGGTAG