mRNA_H-paniculata_contig9629.17325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9629.17325.1
Unique NamemRNA_H-paniculata_contig9629.17325.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: D7FIH1_ECTSI (Eukaryotic translation initiation factor 4E like2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH1_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 3.630e-113
Identity = 160/184 (86.96%), Postives = 168/184 (91.30%), Query Frame = 3 
Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAATQRQ 554
            YDKKMPKK QDQT YQASLHK GSFNT+EGFWKNYVHLKRPS I  NVN+YLFRD  GHVPMWERYPNGGCWILRIRKK+GQTNTSVLGKMWQDLVLAV+GEMFEEPNVVGIGMAIRSREDLLSVWNEDNSN +VRF IGE LKQVLDLE STLIEYKHH+ AMQDMSTFRNA+AY FA T+ Q
Sbjct:   38 YDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVTKGQ 221
[Close]
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A8K1CP93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP93_PYTOL)

HSP 1 Score: 241 bits (614), Expect = 3.800e-75
Identity = 113/180 (62.78%), Postives = 144/180 (80.00%), Query Frame = 3 
Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
            YDKK+PKK  D   YQ++L K+ +F+TVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +PNGGCWIL+I+KKA     +VLGKMWQDLV A +GE FEE +VVGI MAIRS+ED++SVWN DNSN E RF IGE LK++L L+A+TLIEYK H  +++DMSTFRNA+ YVFAA
Sbjct:   32 YDKKLPKKI-DVGTYQSNLQKIAAFSTVEDFWRHYIHIKRPSQLNRDVNLYLFRDRPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQDLVFAAVGEAFEELDVVGIAMAIRSKEDMISVWNADNSNEETRFKIGEKLKEILMLDANTLIEYKFHANSIKDMSTFRNAKPYVFAA 205
[Close]
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A836CBD6_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD6_9STRA)

HSP 1 Score: 241 bits (615), Expect = 5.020e-75
Identity = 117/184 (63.59%), Postives = 141/184 (76.63%), Query Frame = 3 
Query:    3 YDKKMPKKAQ-DQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNS-NPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAATQ 548
            YDKK  K    D   Y+A+LHKV +F+TVE FW+ Y H+KRPS +  N+N+Y FRD     P WE +PNGGCWIL+I+K+A  + TSVLGKMWQDLV A IGE FEEP VVG+GMA+RS+EDLLSVWN DNS N  VRFAIGE LK +LDLE ST+IEYKH   +M+DMST+R+A+ YVFAA Q
Sbjct:   44 YDKKHKKGGTGDYNEYKANLHKVHTFSTVEDFWRLYTHIKRPSALENNINMYFFRDAPNSSPSWESFPNGGCWILKIKKRA-HSGTSVLGKMWQDLVFAAIGECFEEPTVVGVGMAVRSKEDLLSVWNSDNSGNDAVRFAIGEKLKAILDLEPSTMIEYKHFASSMEDMSTYRHAKPYVFAAAQ 226
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BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A024TXL0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXL0_9STRA)

HSP 1 Score: 239 bits (609), Expect = 1.650e-74
Identity = 110/181 (60.77%), Postives = 146/181 (80.66%), Query Frame = 3 
Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
            +DKKMPK+  D + YQ++L K+ +FNTVE FW++Y+H+KRPS++  + N+YLFRD     PMWE +PNGGCWIL+I+KKA     +VLGKMWQDL+ AVIGE FE  NVVGI MA+RS+ED++SVWN DNS+  +RFAIGE LK++L L+++TLIEYK H  +++DMSTFRNA+ YVFAA+
Sbjct:   25 FDKKMPKRT-DVSTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLAKDTNLYLFRDQPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNIRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAS 199
[Close]
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: D0N871_PHYIT (Eukaryotic initiation factor 4E, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N871_PHYIT)

HSP 1 Score: 238 bits (606), Expect = 5.340e-74
Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 3 
Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
            YDKKMPKK  D   YQ++L K+ +FNTVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +P GGCWIL+I+KKA     +VLGKMWQDLV A IGE FE+ +VVGI MAIRS+ED+LSVWN DNS+   RFAIGE LK++L L+++TL+EYK H  +++DMSTFRNA+ YVFAA
Sbjct:   26 YDKKMPKKI-DVGTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 199
[Close]
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: W2PGT1_PHYPN (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=W2PGT1_PHYPN)

HSP 1 Score: 238 bits (606), Expect = 7.420e-74
Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 3 
Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
            YDKKMPKK  D   YQ++L K+ +FNTVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +P GGCWIL+I+KKA     +VLGKMWQDLV A IGE FE+ +VVGI MAIRS+ED+LSVWN DNS+   RFAIGE LK++L L+++TL+EYK H  +++DMSTFRNA+ YVFAA
Sbjct:   36 YDKKMPKKI-DVGTYQSNLQKIATFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 209
[Close]
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: D0P4V5_PHYIT (Eukaryotic initiation factor 4E, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0P4V5_PHYIT)

HSP 1 Score: 238 bits (606), Expect = 1.060e-73
Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 3 
Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
            YDKKMPKK  D   YQ++L K+ +FNTVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +P GGCWIL+I+KKA     +VLGKMWQDLV A IGE FE+ +VVGI MAIRS+ED+LSVWN DNS+   RFAIGE LK++L L+++TL+EYK H  +++DMSTFRNA+ YVFAA
Sbjct:   47 YDKKMPKKI-DVGTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 220
[Close]
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: K3WZ97_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ97_GLOUD)

HSP 1 Score: 234 bits (598), Expect = 8.010e-73
Identity = 111/181 (61.33%), Postives = 141/181 (77.90%), Query Frame = 3 
Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
            YDKK+PKK  D   YQ++L K+  FNTVE FW++Y+H+KRPS++  +VN+YLFRD     PMWE +P GGCWIL+I+KKA     +VLGKMWQDLV A IGE+F   +VVGI MAIRS+ED+LSVWN DNS+   RF IGE LK++L L+++TLIEYK H  +++DMSTFRNA+ YVFAAT
Sbjct:   29 YDKKLPKKI-DVGTYQSNLQKIAQFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEVFASRDVVGIAMAIRSKEDMLSVWNADNSDDSTRFEIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAT 203
[Close]
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: F0W9A8_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9A8_9STRA)

HSP 1 Score: 233 bits (593), Expect = 5.170e-72
Identity = 108/181 (59.67%), Postives = 144/181 (79.56%), Query Frame = 3 
Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
            YDKK+P+   D   Y+++LH++ +F+TVE FW++YVHLKRPS++  ++N+Y+FRD     PMWE +P+GGCWIL+I+KKA     +VLGKMWQDLV A IGE+F + NVVGI MAIRS+ED+LSVWN DNS   VRF+IGE LK++L L+ +TLIEYK H  +++DMSTFRNA++YVFA T
Sbjct:   26 YDKKLPRNV-DVGTYRSNLHRIATFSTVEDFWRHYVHLKRPSELHRDINLYMFRDLPKCAPMWEAFPHGGCWILKIKKKA-----NVLGKMWQDLVFAAIGELFGQANVVGIAMAIRSKEDMLSVWNADNSEDSVRFSIGEKLKEILMLDPNTLIEYKFHANSIRDMSTFRNAKSYVFATT 200
[Close]
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A485KQ57_9STRA (Aste57867_10365 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ57_9STRA)

HSP 1 Score: 233 bits (593), Expect = 1.620e-71
Identity = 109/181 (60.22%), Postives = 145/181 (80.11%), Query Frame = 3 
Query:    3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
            +DKKMPK+  D + YQ++L K+ +F+TVE FW++Y+H+KRPS++  + N+YLFRD     PMWE +PNGG WIL+I+KKA     +VLGKMWQDL+ AVIGE FE  NVVGI MA+RS+ED++SVWN DNS+  VRFAIGE LK++L L+++TLIEYK H  +++DMSTFRNA+ YVFAA+
Sbjct:   68 FDKKMPKRT-DVSTYQSNLQKIANFSTVEDFWRHYIHVKRPSQLSKDTNLYLFRDQPNCAPMWEAFPNGGGWILKIKKKA-----NVLGKMWQDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNVRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAS 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH1_ECTSI3.630e-11386.96Eukaryotic translation initiation factor 4E like2 ... [more]
A0A8K1CP93_PYTOL3.800e-7562.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836CBD6_9STRA5.020e-7563.59Putative eukaryotic initiation factor 4E n=1 Tax=T... [more]
A0A024TXL0_9STRA1.650e-7460.77Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
D0N871_PHYIT5.340e-7462.22Eukaryotic initiation factor 4E, putative n=1 Tax=... [more]
W2PGT1_PHYPN7.420e-7462.22Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
D0P4V5_PHYIT1.060e-7362.22Eukaryotic initiation factor 4E, putative n=2 Tax=... [more]
K3WZ97_GLOUD8.010e-7361.33Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
F0W9A8_9STRA5.170e-7259.67Eukaryotic initiation factor 4E putative n=1 Tax=A... [more]
A0A485KQ57_9STRA1.620e-7160.22Aste57867_10365 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9629contigH-paniculata_contig9629:3980..8802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.9
Seed ortholog evalue4e-88
Seed eggNOG ortholog2880.D7FIH1
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1669@2759
Ec32 ortholog descriptioneukaryotic translation initiation factor 4E like2
Ec32 orthologEc-28_000250.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons6
Model size1150
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9629.17325.1prot_H-paniculata_contig9629.17325.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9629 4543..8788 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.450264-UTR-H-paniculata_contig9629:3979..45421622931194.450264-UTR-H-paniculata_contig9629:3979..4542Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9629 3980..4542 -
1691481632.7877073-UTR-H-paniculata_contig9629:3979..45421691481632.7877073-UTR-H-paniculata_contig9629:3979..4542Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9629 3980..4542 -
1622931194.584657-UTR-H-paniculata_contig9629:8788..88021622931194.584657-UTR-H-paniculata_contig9629:8788..8802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9629 8789..8802 -
1691481632.8673115-UTR-H-paniculata_contig9629:8788..88021691481632.8673115-UTR-H-paniculata_contig9629:8788..8802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9629 8789..8802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.475749-CDS-H-paniculata_contig9629:4542..46151622931194.475749-CDS-H-paniculata_contig9629:4542..4615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 4543..4615 -
1691481632.8031714-CDS-H-paniculata_contig9629:4542..46151691481632.8031714-CDS-H-paniculata_contig9629:4542..4615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 4543..4615 -
1622931194.4960396-CDS-H-paniculata_contig9629:5469..55791622931194.4960396-CDS-H-paniculata_contig9629:5469..5579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 5470..5579 -
1691481632.8140585-CDS-H-paniculata_contig9629:5469..55791691481632.8140585-CDS-H-paniculata_contig9629:5469..5579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 5470..5579 -
1622931194.5155754-CDS-H-paniculata_contig9629:6328..64511622931194.5155754-CDS-H-paniculata_contig9629:6328..6451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 6329..6451 -
1691481632.8234518-CDS-H-paniculata_contig9629:6328..64511691481632.8234518-CDS-H-paniculata_contig9629:6328..6451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 6329..6451 -
1622931194.5348744-CDS-H-paniculata_contig9629:6843..69301622931194.5348744-CDS-H-paniculata_contig9629:6843..6930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 6844..6930 -
1691481632.8321323-CDS-H-paniculata_contig9629:6843..69301691481632.8321323-CDS-H-paniculata_contig9629:6843..6930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 6844..6930 -
1622931194.5557325-CDS-H-paniculata_contig9629:7548..76771622931194.5557325-CDS-H-paniculata_contig9629:7548..7677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 7549..7677 -
1691481632.841435-CDS-H-paniculata_contig9629:7548..76771691481632.841435-CDS-H-paniculata_contig9629:7548..7677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 7549..7677 -
1622931194.5721204-CDS-H-paniculata_contig9629:8737..87881622931194.5721204-CDS-H-paniculata_contig9629:8737..8788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 8738..8788 -
1691481632.8515868-CDS-H-paniculata_contig9629:8737..87881691481632.8515868-CDS-H-paniculata_contig9629:8737..8788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9629 8738..8788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9629.17325.1

>prot_H-paniculata_contig9629.17325.1 ID=prot_H-paniculata_contig9629.17325.1|Name=mRNA_H-paniculata_contig9629.17325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFR
DGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMF
EEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTL
IEYKHHEVAMQDMSTFRNAQAYVFAATQRQGQGQAQQQQG*
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mRNA from alignment at H-paniculata_contig9629:3980..8802-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9629.17325.1 ID=mRNA_H-paniculata_contig9629.17325.1|Name=mRNA_H-paniculata_contig9629.17325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4823bp|location=Sequence derived from alignment at H-paniculata_contig9629:3980..8802- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTATGACAAGAAGATGCCAAAGAAGGCCCAGGACCAAACGGCTTACCAA
GCCTCCCTTCACAAGGTATGCAATGGTCAACGGTGAGCTTACGCTTGTAA
TGGAGTGGTACTTGCAATTTGTTGGTTATTTCGTCACACCTGCGCTGATT
TGGAGCAGAGCAATGATGGGCGATGCGCACTATCAAGGGTCCCCTAGGGA
AAAATAGGTACCAATCAAAGCATGACCGTGGCAAAAATGGTTACTACGGT
GTCGAAACACTGGGAAACGTGAAGAACAAATAGAACTATTGATATTGTAG
TAGCTGGTTGTTTTGGTAAATTTGTGCTCCATGTCTTGGTAAACCCAACT
ACTGGTGGACATAAGACTACAATTTGAAACTACGACAAGTCGTTCGCCAA
GAAATTGCCAATATCGTCTGACTGACCTCATGAATGAAGAGGGTTGAAAA
CGTTGAACGTTTTCCCTACGCGTAGCGGTCCATGTCCGTGTCCGCGAATG
CGGTGCTTTGAATCTATGAGGTTGCGACGTTGAACATAGTATAATCGTTT
GAATGTGATTGAGATTGTGGTTGTGACTGCGATTGCTCGGGGTCCTATGG
CAATAATCGAGCCCCATCACGCCGCAGTTAGGGTTTGAACACCATCTATT
ACTACATACATATTCCAAGTTCTGAATGTGCAACCGATGATGATGGTGAT
ATGATGATGACGTTCCTCTCAGAATAGTGTGCACCTTTCTTTTTATCCAA
GTGAATTAAAAAAAATGTCACGTAACACATAGAATATGACACGGTTAGGA
CCAAGCTGACTTGTAAGGATATTGATACGTCCCACGTGTGGGATAATCTA
TGATACGCATACATTAGTGTCGACCGTTTAGATCTACTACCAAGGCAGCG
AGCCATGGTTCGTGACTCGCGTCATGCGTTTCATTCGCACTGTTTTCCCT
ACACTTTACTTACTTATCAGACCTGCGCGTCAACGACTACAAGGACAAAG
CACTAGAGGATGACCACATGGGCGTAGCCCCGACCTAGCTGAAGTCCTAA
TAAACGCAAAACTAAGGACACGGCTTACAAGTGCGAGCTCAGGCGTGACC
GTGTTTGTGGTTTTCCGAATATTAGGTGGGAAGCTTCAATACGGTGGAAG
GCTTTTGGAAGAACTACGTGCACCTGAAGCGGCCGTCGAAGATCGGCACC
AACGTGAATATATACCTGTTCAGAGACGGACATGGCCATGTACCCATGTG
GGAGGCAAGCACTTTTTTTCAGTTTTGATACCTATCTGCATGAGACGTTG
AAAACGTCTTACTTCACGGTGTTGCCATTTGAATTTTCATTATGCGAGTA
GTGTCACGGCCGCTTCACCCGTGCAATTAGTTCGTGCTGGCTCGTTATCG
ACCCACGAACTCGCGGCGCTCGCAATGTCTCGCCCAGCTCGCATGAAGAT
TCGTAAAGTTAAAGAGTAAGTTACTATGGTACTTAATTGAAAAAAATGTT
CCGAAATAACAAGCAGTTTACTAATACCGTAGTACTGAATTCTTATAATG
CTACTGCCGAATGTTGTTCCATTTGGTGATAACAAAACAGGACTATGGAA
TGCTCAGCGCCTCTTCTAGGGTAGTGCTGTTTACTCACCAACTGCTTGAT
GCGTTTCATTCCTTGTTCGGTCTACTTGATCCTTTCGTTATCTTCTTTTA
TCTCAACTTTAATTTTCGATGCTACTGTTTCCCTTGTGTTGTATTCCACT
TTCATGGCGTGGTTGAGACTGTCTTGTTGTTGTTGTTGTTGTTGTTTCTA
TCTCACACGTTGCTAGTCTTGTGTAATTTTTTATATATTTCATGTGCTTA
TTTCATGCTCATGATTGGACAGCGGTACCCTAACGGAGGCTGCTGGATTC
TGCGCATCCGCAAGAAGGCTGGACAGACCAACACCAGCGTTTTGGGAAAG
ATGTGGCAGGTGTGTATGTAGCTTTCGCTCGTGTACCACGGTATTTTTTT
GTCGAGAGCATCTAAAGGAGCTGATCTTGACGGTTGTGTTGACAACATAA
AAGTTGTGCCCTGCCTGCAGTATATGTCATACTCTATTGCAAATGCGGAT
TTTCCGTTTCTGTTTGTAGATATTCTCAGTTAATGAGGAAAAACGGGGGA
GTCGAGACTCATGCATGGTAATCGAGTAGATCACTACCCCATCAGGTAGT
AGATCGAGGTAACGTGCTGTACGCTGTGCTCGCTTTTTGGGGGCATAATT
GTGATGCCTTTCTGATCTTGACAAAAAAAGTTTCCAAGTACATGTCTAGA
CCTTTTTCGATCGCCATTCTGACGACCCTGTGTTTTGCTGCTGCCGACCA
GGATTTGGTGCTGGCTGTGATTGGAGAAATGTTCGAGGAACCAAACGTCG
TAGGCATCGGCATGGCGATTCGATCACGAGAAGACCTCTTGTCCGTGTGG
AATGAAGACAACAGCAATCCCGAGGTCTTATGTCTCTTTAATTTCTAGTC
TTTATGTTCCACTTTATCGATGATCTCAAGTGTTCACAGAGGTCGCCAGT
CGGCTGTCACACATGACACGCGCTAGGGCCGATATCCTCGTGTTCTATGG
CTGTCTGTATGGCGATGTCAATACGTGGGTCAAGAGCATTTTCCAAAAAG
CAGGTCGGCAGTGAGCTACTCAGTCAGTCACATATATACATACATACTAT
ACATACTATGACTGACTGAGTAGTTCACTGGTGAGCTGCTTTCTTGACAA
TGCGGACGTCTCTTTCTGACTTGCTTTTGGTACAATGGACAGGTCAATTC
GTTGATGGGTTTCGTATCTCTAGGACACTTTCATCCATGGCATGGGATCG
CTTTTTTCCGGCGTTTGCTCTCTCTGGAAGTACCGCGCCTTCCATATCGA
AAGCAAGTGCAAAAAGTATATGTTCGTCGGGAGAACGAACCCACTCACGA
TAAACTTTTGTACAGAAAGCGGCTCACCAATAAGCTACTGAGTCAGAGTA
TTTTCCTATTGGGTCGTTGGTGACCATACGTTGTGTTGATTATTGATTGG
GTCGCTCGTGCTTCCTTCCTCTGATTGCACTGCCTCGCACTGGATTCACA
CCTAGTGTCTTACTTTTTGCTACATCCTGAAGGAATTATTTAATTGTGAG
TGGCATTCAACTGAATGTGAGATGATGCCGGAATTTCCAGTCAACCTCTC
AACTATTCTACATACATTCCCAGGTGAGGTTTGCCATCGGGGAGACGCTC
AAGCAGGTGCTCGACCTGGAAGCATCAACTCTCATCGAGTATAAACACCA
CGAGGTCGCCATGCAGGACATGTCCACTTTCAGGTATGAGCCAGTACGGG
ATGAAATATCCATAATACTGAATGATTGCGTACTGTGCTCGCTTCCCCTA
AGCAGTATTTTCCCATCTTTTGATTATCACAATAGCTCTGCCGTATTCAC
GAGAGCCCAGTGCTGGACCTGCTATGGTAACGTATGCCTTTATGACGCAT
GAGACGAGCCCCACGGCTAAGTATCAACCATCTACTGGGAAACTAAATCT
ATATAGGAAAATGGTCGGTATCAAAGCGCTCGTTTATTAATTTTTGGTTC
GTACCTGAGAAGATGTGTTGGTACGTTCTCGTACATAAAGAAACGGGTTT
CGAATTGGACGAAAGCTTTTTCCCTAGGACAGACAGGAATGGAGCATTCG
TAACTGTCTTGAGCTATCATTATTTGTCTTGGCTAAATACGCGTTTGTTC
GTAATTAGTCTATGAACGGCCACTCTACAGATAATCACCGGGTGGTCGTA
TACTCGGTGAAAAGCAGTCACACATGCAAATCCTGTCTATTTCACGGATG
GTATCGTACATATTGAATACTCGATCTGGCCGAGCTTTTCAATGCTCCAC
CGTATATCGAATACATTGCATATTATTCGCGTCACATGGACATCTTCCCC
AACTCAATTAGATACAGTATTCGTGTCTTGTATTAGTGTTTGTCAGGGCG
GTGAAGAATTTTATTCTCTAGTATTCTCAACTTTTGAAAATCTTGAACGC
CCTCTCTGCTCTCGAAGTAAACGAGCGTATTGTTCCTTTGTTGCCCGCGC
GATCATGTTAGTGGTGAGGCTAGGCTTCAAATATGTTGAAACGTGTGCTG
TTCTATTCGTTCTGCTGTCGTGACGATGATTGTACAGGAATGCCCAAGCT
TATGTTTTCGCCGCGACGCAAAGACAAGGACAAGGCCAAGCACAGCAGCA
GCAGGGGTAGATTTTCTACCTACATGTCTGCCAGTCTTTCGATAGCATCA
ACTTTTGCTGTTTTTTGAATCAGCTCTTGGAGGTTGCGTGCGCGACTTTC
TTAGTAATTGCAACTGCCTTGGGGTTATGGAGCGGCATACGTACAATGCA
TACATATAGCTGTGGAGACTGGCGTATGACGCGAGAACTGGTTGATCAAC
TGGTGGCCAAATTTTTCGGCGCTTCATCTACTAAGCTGGCACGTGTTGCA
TATGACAAACGTTGTAAAGTTTGAAGTTAACCTGTTTTGGGATTGAATTG
TTTAGTACTTACTGCATTGCTACCGTTTGTCGTATACTACTATTATTATT
ATACAGTCATCAGGGGTCAGGCACATAACATACGCCCTGAAAAAAAGACA
TTGCATAATGATCATTTCTCCGGTTGTACTTGCGACGTGTATCATTCCAA
CCTTGTAACCTCTCTACTCCCACCCACATGTATCGCCGATTTGGCAGAAT
TTGGATTTCGGAAATCATACCGCGGCGGATTGTTCATGGCCCGCTGTTAG
TGAAATAAGCATATCACTCGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig9629:3980..8802-

>mRNA_H-paniculata_contig9629.17325.1 ID=mRNA_H-paniculata_contig9629.17325.1|Name=mRNA_H-paniculata_contig9629.17325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig9629:3980..8802- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAGAAGGCCCAGGACCAAACGGCTTACCAAGCCTCCCTTCACAA
GATGCCAAAGAAGGCCCAGGACCAAACGGCTTACCAAGCCTCCCTTCACA
AGGTGGGAAGCTTCAATACGGTGGAAGGCTTTTGGAAGAACTACGTGCAC
CTGAAGCGGCCGTCGAAGATCGGCACCAACGTGAATATATACCTGTTCAG
AGACGGACATGGCCATGTACCCATGTGGGAGGTGGGAAGCTTCAATACGG
TGGAAGGCTTTTGGAAGAACTACGTGCACCTGAAGCGGCCGTCGAAGATC
GGCACCAACGTGAATATATACCTGTTCAGAGACGGACATGGCCATGTACC
CATGTGGGAGCGGTACCCTAACGGAGGCTGCTGGATTCTGCGCATCCGCA
AGAAGGCTGGACAGACCAACACCAGCGTTTTGGGAAAGATGTGGCAGCGG
TACCCTAACGGAGGCTGCTGGATTCTGCGCATCCGCAAGAAGGCTGGACA
GACCAACACCAGCGTTTTGGGAAAGATGTGGCAGGATTTGGTGCTGGCTG
TGATTGGAGAAATGTTCGAGGAACCAAACGTCGTAGGCATCGGCATGGCG
ATTCGATCACGAGAAGACCTCTTGTCCGTGTGGAATGAAGACAACAGCAA
TCCCGAGGATTTGGTGCTGGCTGTGATTGGAGAAATGTTCGAGGAACCAA
ACGTCGTAGGCATCGGCATGGCGATTCGATCACGAGAAGACCTCTTGTCC
GTGTGGAATGAAGACAACAGCAATCCCGAGGTGAGGTTTGCCATCGGGGA
GACGCTCAAGCAGGTGCTCGACCTGGAAGCATCAACTCTCATCGAGTATA
AACACCACGAGGTCGCCATGCAGGACATGTCCACTTTCAGGTGAGGTTTG
CCATCGGGGAGACGCTCAAGCAGGTGCTCGACCTGGAAGCATCAACTCTC
ATCGAGTATAAACACCACGAGGTCGCCATGCAGGACATGTCCACTTTCAG
GAATGCCCAAGCTTATGTTTTCGCCGCGACGCAAAGACAAGGACAAGGCC
AAGCACAGCAGCAGCAGGGGTAGGAATGCCCAAGCTTATGTTTTCGCCGC
GACGCAAAGACAAGGACAAGGCCAAGCACAGCAGCAGCAGGGGTAG
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