prot_H-paniculata_contig9615.17316.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9615.17316.1
Unique Nameprot_H-paniculata_contig9615.17316.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length328
Homology
BLAST of mRNA_H-paniculata_contig9615.17316.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 7.170e-98
Identity = 174/330 (52.73%), Postives = 217/330 (65.76%), Query Frame = 0
Query:    1 PSSLLFPSLCHCLSLAIVMDVHRILV-RQFIRPLGLSYGVIMVIFLGALVPAVANRNFQYHYDWVTEQRKLALTRAYLLFKGD-DGMVGRDEWVSLMSFLRPDCDSEHMSALFSAAKLADTKLPELPGIQSVDLARRQSSSIDNFQSDRLSKGGLFMLCALGSATFSKVSKETKLCCRKPESHEKQDEKERARLRRFFFYVDWALLWCIPGFHLSFSHLLLNVVVVIQGYQTVREGDSPEDRPAWASPLGGTLIAYYCVNAGLKMFALGVREYLGQWRHALGMALNCIGIAYYVGLWFPGEAWHSVYHILQAFRLTVLWNLLHQLGPTSS 328
            PSS     L    S+  ++DV  I    + IR +GLSYGVIMVIFLGALVPAVANRNFQ+HY+WV EQR+LALTRA++L + + DG VGR++WV LM+ LRPDC++ H SALF AAK AD +     G                   +RLSKGG FMLCALG+A+FS+         RK ++  ++   +  R+R+    +D AL W +PG +   S  +LNV VV+QGYQ V EGD PE RP WA PLGG LIAY+CV A L+M   G R Y+ QWRHALGM LN IG+ YY+GLWF G  WHS Y ILQA R+ +LWN+LH+LG TSS
Sbjct:  393 PSSSAMTFLRMFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQHHYNWVKEQRRLALTRAFMLLRREEDGTVGREDWVRLMACLRPDCNAGHTSALFDAAKKADDETVSFGGED---------------DRNRLSKGGFFMLCALGTASFSRA--------RKDDAGSRRSGSKWKRIRQ---RLDAALSWSMPGSNFPLSRQVLNVAVVVQGYQIVLEGDDPEGRPTWAYPLGGFLIAYFCVQASLRMIVDGARLYIMQWRHALGMCLNLIGVTYYMGLWFDGTGWHSFYKILQASRVVILWNVLHRLGSTSS 696          
BLAST of mRNA_H-paniculata_contig9615.17316.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 3.350e-95
Identity = 171/321 (53.27%), Postives = 212/321 (66.04%), Query Frame = 0
Query:   14 SLAIVMDVHRILV-RQFIRPLGLSYGVIMVIFLGALVPAVANRNFQYH----YDWVTEQRKLALTRAYLLFKGD-DGMVGRDEWVSLMSFLRPDCDSEHMSALFSAAKLADTKLPELPGIQSVDLARRQSSSIDNFQSDRLSKGGLFMLCALGSATFSKVSKETKLCCRKPESHEKQDEKERARLRRFFFYVDWALLWCIPGFHLSFSHLLLNVVVVIQGYQTVREGDSPEDRPAWASPLGGTLIAYYCVNAGLKMFALGVREYLGQWRHALGMALNCIGIAYYVGLWFPGEAWHSVYHILQAFRLTVLWNLLHQLGPTSS 328
            S+  ++DV  I    + IR +GLSYGVIMVIFLGALVPAVANRNFQY     Y+WV EQRKLALTRA++L + + D  VGR++WV LM+ LRPDC++ H SALF AAK A+ +   L G                   +RLSKGG FMLCALG+A+FS+         RK ++  ++   +  R+R+    +D AL W +PG +   S  +LNV VV+QGYQ V EGD PE RP WA PLGG LIAY+CV A L M   G R Y+ QWRHALGM LN IG+AYY+GLWF G  WHS Y ILQA R+ +LWN+LH+LG TSS
Sbjct:  269 SIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQYQSKESYNWVKEQRKLALTRAFMLLRREEDRTVGREDWVRLMACLRPDCNAGHTSALFDAAKKAEDETVSLGGED---------------DRNRLSKGGFFMLCALGTASFSRA--------RKDDAGSRRSGSKWKRIRQ---RLDAALSWSMPGSNFPLSRQVLNVAVVVQGYQIVLEGDDPERRPTWAYPLGGFLIAYFCVQASLWMIVDGARLYIRQWRHALGMCLNLIGVAYYMGLWFDGTGWHSFYQILQASRVVILWNVLHRLGSTSS 563          
BLAST of mRNA_H-paniculata_contig9615.17316.1 vs. uniprot
Match: D7FGS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 3.170e-11
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 0
Query:   77 LLFKGDDGMVGRDEWVSLMSFLRPDCDSEHMSALFSAAKLADTKLPELPGIQSVDLARRQSSSIDNFQSDR--LSKGGLFMLCALGSATFSKVSKETKLCCRKPESHEKQDEKERARLR 193
            +L +  DG + RD++V LM  LRPDCD +H SALFSAAK A+                +QS+S+   + DR  LSK G FMLCALG+A  S+   E     R+    +   +  RAR R
Sbjct:    1 MLLRHRDGTLPRDDYVQLMMCLRPDCDKDHTSALFSAAKKAE---------------EQQSNSVAAVEDDRNLLSKTGFFMLCALGTADISRTQNERMKMYRRSRRRKSGRKWARARAR 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9615.17316.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0T6_9PHAE7.170e-9852.73Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR41_ECTSI3.350e-9553.27Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
D7FGS1_ECTSI3.170e-1140.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 278..297
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 267..277
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 303..320
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 224..242
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 321..328
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 243..266
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 195..223
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 54..194
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 298..302
NoneNo IPR availableTMHMMTMhelixcoord: 243..265
NoneNo IPR availableTMHMMTMhelixcoord: 278..297
NoneNo IPR availableTMHMMTMhelixcoord: 201..223
NoneNo IPR availableTMHMMTMhelixcoord: 29..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9615contigH-paniculata_contig9615:1090..7616 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9615.17316.1mRNA_H-paniculata_contig9615.17316.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9615 1090..7616 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9615.17316.1 ID=prot_H-paniculata_contig9615.17316.1|Name=mRNA_H-paniculata_contig9615.17316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=328bp
PSSLLFPSLCHCLSLAIVMDVHRILVRQFIRPLGLSYGVIMVIFLGALVP
AVANRNFQYHYDWVTEQRKLALTRAYLLFKGDDGMVGRDEWVSLMSFLRP
DCDSEHMSALFSAAKLADTKLPELPGIQSVDLARRQSSSIDNFQSDRLSK
GGLFMLCALGSATFSKVSKETKLCCRKPESHEKQDEKERARLRRFFFYVD
WALLWCIPGFHLSFSHLLLNVVVVIQGYQTVREGDSPEDRPAWASPLGGT
LIAYYCVNAGLKMFALGVREYLGQWRHALGMALNCIGIAYYVGLWFPGEA
WHSVYHILQAFRLTVLWNLLHQLGPTSS
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