mRNA_H-paniculata_contig9615.17316.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9615.17316.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE) HSP 1 Score: 322 bits (826), Expect = 7.170e-98 Identity = 174/330 (52.73%), Postives = 217/330 (65.76%), Query Frame = 1 Query: 1 PSSLLFPSLCHCLSLAIVMDVHRILV-RQFIRPLGLSYGVIMVIFLGALVPAVANRNFQYHYDWVTEQRKLALTRAYLLFKGD-DGMVGRDEWVSLMSFLRPDCDSEHMSALFSAAKLADTKLPELPGIQSVDLARRQSSSIDNFQSDRLSKGGLFMLCALGSATFSKVSKETKLCCRKPESHEKQDEKERARLRRFFFYVDWALLWCIPGFHLSFSHLLLNVVVVIQGYQTVREGDSPEDRPAWASPLGGTLIAYYCVNAGLKMFALGVREYLGQWRHALGMALNCIGIAYYVGLWFPGEAWHSVYHILQAFRLTVLWNLLHQLGPTSS 984
PSS L S+ ++DV I + IR +GLSYGVIMVIFLGALVPAVANRNFQ+HY+WV EQR+LALTRA++L + + DG VGR++WV LM+ LRPDC++ H SALF AAK AD + G +RLSKGG FMLCALG+A+FS+ RK ++ ++ + R+R+ +D AL W +PG + S +LNV VV+QGYQ V EGD PE RP WA PLGG LIAY+CV A L+M G R Y+ QWRHALGM LN IG+ YY+GLWF G WHS Y ILQA R+ +LWN+LH+LG TSS
Sbjct: 393 PSSSAMTFLRMFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQHHYNWVKEQRRLALTRAFMLLRREEDGTVGREDWVRLMACLRPDCNAGHTSALFDAAKKADDETVSFGGED---------------DRNRLSKGGFFMLCALGTASFSRA--------RKDDAGSRRSGSKWKRIRQ---RLDAALSWSMPGSNFPLSRQVLNVAVVVQGYQIVLEGDDPEGRPTWAYPLGGFLIAYFCVQASLRMIVDGARLYIMQWRHALGMCLNLIGVTYYMGLWFDGTGWHSFYKILQASRVVILWNVLHRLGSTSS 696
BLAST of mRNA_H-paniculata_contig9615.17316.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI) HSP 1 Score: 313 bits (802), Expect = 3.350e-95 Identity = 171/321 (53.27%), Postives = 212/321 (66.04%), Query Frame = 1 Query: 40 SLAIVMDVHRILV-RQFIRPLGLSYGVIMVIFLGALVPAVANRNFQYH----YDWVTEQRKLALTRAYLLFKGD-DGMVGRDEWVSLMSFLRPDCDSEHMSALFSAAKLADTKLPELPGIQSVDLARRQSSSIDNFQSDRLSKGGLFMLCALGSATFSKVSKETKLCCRKPESHEKQDEKERARLRRFFFYVDWALLWCIPGFHLSFSHLLLNVVVVIQGYQTVREGDSPEDRPAWASPLGGTLIAYYCVNAGLKMFALGVREYLGQWRHALGMALNCIGIAYYVGLWFPGEAWHSVYHILQAFRLTVLWNLLHQLGPTSS 984
S+ ++DV I + IR +GLSYGVIMVIFLGALVPAVANRNFQY Y+WV EQRKLALTRA++L + + D VGR++WV LM+ LRPDC++ H SALF AAK A+ + L G +RLSKGG FMLCALG+A+FS+ RK ++ ++ + R+R+ +D AL W +PG + S +LNV VV+QGYQ V EGD PE RP WA PLGG LIAY+CV A L M G R Y+ QWRHALGM LN IG+AYY+GLWF G WHS Y ILQA R+ +LWN+LH+LG TSS
Sbjct: 269 SIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQYQSKESYNWVKEQRKLALTRAFMLLRREEDRTVGREDWVRLMACLRPDCNAGHTSALFDAAKKAEDETVSLGGED---------------DRNRLSKGGFFMLCALGTASFSRA--------RKDDAGSRRSGSKWKRIRQ---RLDAALSWSMPGSNFPLSRQVLNVAVVVQGYQIVLEGDDPERRPTWAYPLGGFLIAYFCVQASLWMIVDGARLYIRQWRHALGMCLNLIGVAYYMGLWFDGTGWHSFYQILQASRVVILWNVLHRLGSTSS 563
BLAST of mRNA_H-paniculata_contig9615.17316.1 vs. uniprot
Match: D7FGS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS1_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 3.170e-11 Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 229 LLFKGDDGMVGRDEWVSLMSFLRPDCDSEHMSALFSAAKLADTKLPELPGIQSVDLARRQSSSIDNFQSDR--LSKGGLFMLCALGSATFSKVSKETKLCCRKPESHEKQDEKERARLR 579
+L + DG + RD++V LM LRPDCD +H SALFSAAK A+ +QS+S+ + DR LSK G FMLCALG+A S+ E R+ + + RAR R
Sbjct: 1 MLLRHRDGTLPRDDYVQLMMCLRPDCDKDHTSALFSAAKKAE---------------EQQSNSVAAVEDDRNLLSKTGFFMLCALGTADISRTQNERMKMYRRSRRRKSGRKWARARAR 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9615.17316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9615.17316.1 >prot_H-paniculata_contig9615.17316.1 ID=prot_H-paniculata_contig9615.17316.1|Name=mRNA_H-paniculata_contig9615.17316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=328bp PSSLLFPSLCHCLSLAIVMDVHRILVRQFIRPLGLSYGVIMVIFLGALVPback to top mRNA from alignment at H-paniculata_contig9615:1090..7616+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9615.17316.1 ID=mRNA_H-paniculata_contig9615.17316.1|Name=mRNA_H-paniculata_contig9615.17316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6527bp|location=Sequence derived from alignment at H-paniculata_contig9615:1090..7616+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9615:1090..7616+ >mRNA_H-paniculata_contig9615.17316.1 ID=mRNA_H-paniculata_contig9615.17316.1|Name=mRNA_H-paniculata_contig9615.17316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at H-paniculata_contig9615:1090..7616+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |