mRNA_H-paniculata_contig9614.17315.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9614.17315.1
Unique NamemRNA_H-paniculata_contig9614.17315.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: D7G521_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G521_ECTSI)

HSP 1 Score: 407 bits (1045), Expect = 1.430e-128
Identity = 273/353 (77.34%), Postives = 290/353 (82.15%), Query Frame = 1 
Query:    1 RAKKAELAASYLLWTSDPIHKSLMDVSGLKGEAKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCNVPQETREKFKLAVHMSVYDGAKGTAPSVKEIPPLLSGFFKREITARYNIEEDVVSVKPTRAPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------DPQAKVLYDYDPAGQEGMVPVSAGQMVSIKSQDSPDWWMAATDDGREGWVPANYLEMQ 978
            RAKKAELA+S+L WTSDPIHKSL DVSGLKGEAKKQFKN+LGYCGDRKYQYPD LIRDI AKGLEMTELRGELYVQAMKQLTKN  PAS  RCWEV+T LL CFPPPK++ENYVHYFVRCN P++TREKFKLAVHMSVYDG K TAPSVKEIPPLLSGFF+REI+ARYNIEEDVVSVKPTR PPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                      +PQA+VLYDYDPAGQEGMV VSAGQMV + ++D+PDWWMA+ D G EGWVPANYLEMQ
Sbjct:   40 RAKKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGYGQPAAGTNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQMVGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ 392
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 400 bits (1027), Expect = 1.270e-115
Identity = 259/353 (73.37%), Postives = 278/353 (78.75%), Query Frame = 1 
Query:    1 RAKKAELAASYLLWTSDPIHKSLMDVSGLKGEAKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCNVPQETREKFKLAVHMSVYDGAKGTAPSVKEIPPLLSGFFKREITARYNIEEDVVSVKPTRAPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------DPQAKVLYDYDPAGQEGMVPVSAGQMVSIKSQDSPDWWMAATDDGREGWVPANYLEMQ 978
            +AKKAELA+S+L WTSDPIHKSL DVSGLKGEAKKQFKN+LGYCGDRKYQYPD LIRDI AKGLEMTELRGELYVQAMKQLTKN  PAS  R WEV+T LL CFPPPK++ENYVHYFVRCN P++TREKFKLAVHMSVYDG K TAPSVKEIPPLLSGFF+REI+ARYNIEEDVVSVKPTR PPSRPGWAAAXXXXXXXXXXXXXXXXXX      XXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXX                                     +PQA+VLYDYDPAGQEGMV VSAGQ+V + ++D+PDWWMA+ D G EGWVPANYLEMQ
Sbjct: 1033 KAKKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRYWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXGSSNGGXXXXXXXSAPPAANSTAAXXXXXXXXXXXXXXXXXXXXXXXXGGYGQQAAITNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQVVGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ 1385
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 283 bits (723), Expect = 6.340e-75
Identity = 190/325 (58.46%), Postives = 222/325 (68.31%), Query Frame = 1 
Query:    1 RAKKAELAASYLLWTSDPIHKSLMDVSGLKGEAKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCNVPQETREKFKLAVHMSVYDGAKGTAPSVKEIPPLLSGFFKREITARYNIEEDVVSVKPTRAPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPQAKVLYDYDPAGQEGMVPVSAGQMVSIKSQDSPDWWMAATDDGREGWVPANYLEM 975
            +  KA+LA  +L  T++PIHKSL+ VSGLKGEA KQFKNLLGY GDRKYQYPD L+ +I AKGLE+  LR ELYVQAMKQLT NP P S+ RCWEV+  LLH FPPP+++ENYVH FVR   P   R+K KLAVHMSV +GAK  AP  +EIP +L  FF R I  RYNIE+DVVS  P      R GW AAXXXXXXXXXXXXXXXX              XXXXXXXXXXXXX  XXXXXXXXXX                      P A+ LYDYDPAGQ GM+ +  GQ + IK ++  DWWMA T+ G++GWVPA+Y+++
Sbjct: 1145 KKSKADLARGFLSHTTEPIHKSLLRVSGLKGEALKQFKNLLGYAGDRKYQYPDPLLHEIVAKGLEVPTLRSELYVQAMKQLTDNPNPQSEQRCWEVLMLLLHTFPPPEDVENYVHAFVRARAPAGQRDKLKLAVHMSVVEGAKAAAPPEREIPAILGAFFDRAIEPRYNIEQDVVSAAPPPRRAERAGWGAAXXXXXXXXXXXXXXXXYQNGAAAAATPYGAXXXXXXXXXXXXXPLXXXXXXXXXXSA--------------------PTARALYDYDPAGQAGMLALRMGQALVIKDREGADWWMAETE-GQQGWVPASYVQL 1448
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: A0A7S3YT57_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YT57_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 2.360e-23
Identity = 56/157 (35.67%), Postives = 94/157 (59.87%), Query Frame = 1 
Query:   10 KAELAASYLLWTSDPIHKSLMDVSGLKG-EAKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCNVPQET-REKFKLAVHMSVYDGAKGTAPSVKEIPPLLSG 474
            + EL  +   WT  PIH SL+++ G  G +A + F+NLLG+ GDR+Y +P+ L+++I  +G++   LR EL+ Q +KQ+T+NP   S  + W  M   L  FPP  E ENY   ++R N+  E  R ++   +H +++ GA+   PS  ++  +++G
Sbjct: 1196 REELQRTMFRWTKSPIHASLIELPGRLGKDATRMFRNLLGFMGDRQYNFPELLLKEILEQGIQNPPLRDELFAQIIKQITQNPDNQSSHKGWSAMAVCLESFPPQPEFENYFEVWIRKNIKDEAKRTRYLTLLHQAIFCGARQFPPSEGDMKRIMAG 1352
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: A0A7S2WSL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WSL5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 8.620e-21
Identity = 59/164 (35.98%), Postives = 89/164 (54.27%), Query Frame = 1 
Query:   10 KAELAASYLLWTSDPIHKSLMDVS-------GLKGEAKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCNVPQETREKFKLAVHMSVY-DGAKGTAPSVKEIPPLLSGF 477
            K  +A   L WT+ PIH SL+D          L   AK  FK +LGY GDRKY Y DAL  D+   GLE   LR E+++Q MKQLT+NP+  SQ + W+++       P P ++E Y+  +++ N P + ++ F  A+H   Y        P+++++P +   F
Sbjct:    6 KEGVALKMLRWTNRPIHTSLVDYPKSTKDTVSLVKRAKMIFKAILGYMGDRKYPYTDALACDVLTAGLEEPRLRAEIFIQLMKQLTENPSQDSQAKGWDLLGLCAMTLPLPDDIEFYLSLWLQQNAPAKGQKYFS-AIHALQYGSNTSREKPTLRDVPLMRQEF 168
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: A0A7S4IN46_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IN46_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 2.540e-20
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = 1 
Query:   10 KAELAASYLLWTSDPIHKSLMDVSGL-KGEAKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCNVPQETREKFKLAVHMSVYDGAKGTAPSVKEI 456
            K ++    + W+  PIH  L  +  L + ++   FKN++G+ GDR   +P+ L R++  KG++  ELR E+Y+Q +KQ+T NP P+S ++ +++M   LHCFPP  E ENY+  + R N         + A+H  V+ G     PS ++I
Sbjct: 1275 KDKVKEQMMNWSKHPIHAPLTRIPNLFQKDSVLSFKNIMGFMGDRVMSFPNMLAREVLEKGIQQPELRDEIYIQLIKQVTVNPNPSSTEKGYKMMNMCLHCFPPSTEFENYLEIYFR-NKGDSKSNDLRKALHQIVWSGPVAVPPSPEQI 1423
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: A0A7S0GZ93_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GZ93_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 2.230e-16
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1 
Query:   19 LAASYLLWTSDPIHKSLMDVSGLKGE-AKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCNVPQETREKFKLAVHMSVYDGAKGTAPSVKEIPPLLSG 474
            LA S L +T+ PIH +L + +      A K FKNL+G+ GDR Y+    L ++I  +GLE  ++R EL++  +KQLT NP+P S++R W+ ++ LLH F PP  L+N++  ++  N  +E + K    ++ ++Y G + +  S  E   ++ G
Sbjct:  218 LAQSMLKFTTYPIHAALTETNAKSNNLAIKLFKNLMGFMGDRTYKNAVLLSQEICKEGLENEDIRDELFLHTIKQLTANPSPKSRERGWQHLSLLLHTF-PPSGLDNFLDKWIMDNA-KERKAKLLHILYATLYTGKRYSPLSDDETKNVMDG 368
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: A0A7S0H1X2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H1X2_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 5.450e-16
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 1 
Query:   19 LAASYLLWTSDPIHKSLMDVSGLKGE-AKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCNVPQETREKFKLAVHMSVYDGAKGTAPSVKEIPPLLSG 474
            LA S L +T+ PIH +L + +      A K FKNL+G+ GDR Y+    L ++I  +GLE  ++R EL++  +KQLT NP+P S++R W+ ++ LLH F PP  L+N++  ++  N  +E + K    ++ ++Y G + +  S  E   ++ G
Sbjct: 2608 LAQSMLKFTTYPIHAALTETNAKSNNLAIKLFKNLMGFMGDRTYKNAVLLSQEICKEGLENEDIRDELFLHTIKQLTANPSPKSRERGWQHLSLLLHTF-PPSGLDNFLDKWIMDNA-KERKAKLLHILYATLYTGKRYSPLSDDETKNVMDG 2758
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: A0A7S2J1Q8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J1Q8_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 5.820e-16
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:   94 EAKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVR 357
            +A  QFK+LLG+ G++K  YP+    +    G     L  E+YVQ MKQLT NP+ AS D+ W++M   L  FPPPK LEN+V +F++
Sbjct:   18 QATVQFKSLLGFLGEKKVPYPEEAGEEWLRVGKATPALHAEMYVQLMKQLTANPSEASNDKGWQLMVATLSHFPPPKPLENFVAFFIK 105
[Close]
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Match: A0A5A8CSV2_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CSV2_CAFRO)

HSP 1 Score: 95.1 bits (235), Expect = 6.630e-16
Identity = 60/168 (35.71%), Postives = 89/168 (52.98%), Query Frame = 1 
Query:   10 KAELAASYLLWTSDPIHKSLMDVSG--LKGEAKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGELYVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCN------VPQETREKFKLAVHMSVYDGAKGTAPSVKEI------PPLLS 471
            K  L A+ L W S  I++SL+++    L   A +  KN+LGYCGD++  +P  L +DI  KGL+  ELR E+Y+  +KQLT N    S+ RCW+++   +  FPP  E E  +  F+  +      V    R   +  +  SV  GA    PSV+EI      PP+L+
Sbjct: 1570 KKRLMANQLTWQSTTINRSLLELPNKPLNKMATRLHKNILGYCGDKQMSFPAMLAQDILQKGLDEAELRDEIYLLVLKQLTGNTVKTSEMRCWQLICMCVGTFPPTHEFEYCLLNFLLSHRESMGTVGNYARYALR-RLEGSVTAGASAFVPSVEEILAYKDRPPILA 1736
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9614.17315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G521_ECTSI1.430e-12877.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK5_9PHAE1.270e-11573.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C908_9STRA6.340e-7558.46P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3YT57_9EUKA2.360e-2335.67Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2WSL5_9STRA8.620e-2135.98Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S4IN46_9EUKA2.540e-2034.67Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S0GZ93_9EUKA2.230e-1635.29Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S0H1X2_9EUKA5.450e-1635.29Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2J1Q8_9EUKA5.820e-1645.45Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A5A8CSV2_CAFRO6.630e-1635.71Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9614contigH-paniculata_contig9614:3123..8587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue3.1e-18
Seed eggNOG ortholog227086.JGI_V11_140911
KEGG koko:K10357,ko:K21868
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0015629,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Ec32 ortholog descriptionMyTH4 domain
Ec32 orthologEc-00_008190.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Exons5
Model size3353
Cds size912
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.9669664-UTR-H-paniculata_contig9614:3122..54941622931192.9669664-UTR-H-paniculata_contig9614:3122..5494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9614 3123..5494 -
1691481632.0848756-UTR-H-paniculata_contig9614:3122..54941691481632.0848756-UTR-H-paniculata_contig9614:3122..5494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9614 3123..5494 -
1622931193.0892024-UTR-H-paniculata_contig9614:8518..85871622931193.0892024-UTR-H-paniculata_contig9614:8518..8587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9614 8519..8587 -
1691481632.1782563-UTR-H-paniculata_contig9614:8518..85871691481632.1782563-UTR-H-paniculata_contig9614:8518..8587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9614 8519..8587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.9951353-CDS-H-paniculata_contig9614:5494..55961622931192.9951353-CDS-H-paniculata_contig9614:5494..5596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 5495..5596 -
1691481632.0980496-CDS-H-paniculata_contig9614:5494..55961691481632.0980496-CDS-H-paniculata_contig9614:5494..5596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 5495..5596 -
1622931193.0125275-CDS-H-paniculata_contig9614:6275..67581622931193.0125275-CDS-H-paniculata_contig9614:6275..6758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 6276..6758 -
1691481632.1075768-CDS-H-paniculata_contig9614:6275..67581691481632.1075768-CDS-H-paniculata_contig9614:6275..6758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 6276..6758 -
1622931193.0278118-CDS-H-paniculata_contig9614:7134..72061622931193.0278118-CDS-H-paniculata_contig9614:7134..7206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 7135..7206 -
1691481632.1274855-CDS-H-paniculata_contig9614:7134..72061691481632.1274855-CDS-H-paniculata_contig9614:7134..7206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 7135..7206 -
1622931193.048981-CDS-H-paniculata_contig9614:7956..80931622931193.048981-CDS-H-paniculata_contig9614:7956..8093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 7957..8093 -
1691481632.1403048-CDS-H-paniculata_contig9614:7956..80931691481632.1403048-CDS-H-paniculata_contig9614:7956..8093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 7957..8093 -
1622931193.0694258-CDS-H-paniculata_contig9614:8400..85181622931193.0694258-CDS-H-paniculata_contig9614:8400..8518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 8401..8518 -
1691481632.1581743-CDS-H-paniculata_contig9614:8400..85181691481632.1581743-CDS-H-paniculata_contig9614:8400..8518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9614 8401..8518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9614.17315.1prot_H-paniculata_contig9614.17315.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9614 5495..8518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9614.17315.1

>prot_H-paniculata_contig9614.17315.1 ID=prot_H-paniculata_contig9614.17315.1|Name=mRNA_H-paniculata_contig9614.17315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=304bp
MDVSGLKGEAKKQFKNLLGYCGDRKYQYPDALIRDIAAKGLEMTELRGEL
YVQAMKQLTKNPTPASQDRCWEVMTFLLHCFPPPKELENYVHYFVRCNVP
QETREKFKLAVHMSVYDGAKGTAPSVKEIPPLLSGFFKREITARYNIEED
VVSVKPTRAPPSRPGWAAAAASATAAQASTATAGSSNGTYGSGVYGGGGG
GYGGYAAPAAVATTGGFEGGDSGGSTPGVQAMAAPPLPPKPKPPSDPQAK
VLYDYDPAGQEGMVPVSAGQMVSIKSQDSPDWWMAATDDGREGWVPANYL
EMQ*
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mRNA from alignment at H-paniculata_contig9614:3123..8587-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9614.17315.1 ID=mRNA_H-paniculata_contig9614.17315.1|Name=mRNA_H-paniculata_contig9614.17315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5465bp|location=Sequence derived from alignment at H-paniculata_contig9614:3123..8587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCTAAGAAAGCGGAGCTAGCGGCGTCGTACCTACTGTGGACCTCGGA
CCCGATTCACAAATCGTTGATGGACGTTTCTGGGCTTAAGGGGGAGGCGA
AGAAGCAATTCAAGAATCTTCTTGGATATTGCGGGGATCGCAAATATCAG
TATCCGGATGCGCTCATTCGGGACATTGCGGCGAAAGGTGAGTTGTTGCT
ATTGTTATTTTCCAGTTGTTGTGAAATGTCATCATCCAGTCGTTGTTGGC
CTTGTCGGCTTTGTTGGGGCCCTATGGTGTTAGATCGGAGAGGCGTAATG
CTATGGTTGGTCAGCACACGTTGGTTCCTACGCCTAGGAAGAAGAATGTT
GTAGTGTCGTAGGCATGCATGGGGAACTGGTGATGATGGCGATGACGATG
ATGAGGATGTCAGGATGTCATAATGTAAATTGTGGTCGTCACTGTTATTT
CACACTTTTTGTATCTGTGACCAACCACTGAACCGACCGACCAGGGTTGG
AGATGACCGAGCTGCGAGGAGAGCTGTACGTCCAAGCGATGAAACAGCTC
ACCAAAAATCCCACCCCGGCCTCGCAGGACCGGTGTTGGGAAGTGATGAC
TTTCCTGTTGCACTGCTTTCCTCCTCCGAAGGTCAGTAAATTGCAAATTC
AAACGTGTTGTGTAGTGAAGAGTCATACCTGGTCCTGTGTCATGTTCCAC
TCGTTGTTGCGCGCGATCTGAACATTATTCAGTGTTCGATCTCATCATCT
TTCTGGGGAAGTTTTTGTCACCCTCTCTAAAATTGATGCAAGTTGGAAAC
GGACTTTAAAATACTGTAGAATCGATGTCAATTTTTTTTTATTTTTTATA
ACTGTCATACCATAGGCACAAGTCGTTTGTGCGGTGGGTTAGATTGATTG
GATTGCAACTTCCTGGAGGAGGTGACTCTAAAAGTTAGCTATCGTTGTGT
ACCGACAGCTATCCATTTCTCTTTTTCGACGAGCGCATTGGCTCCGGCGA
GCAAGCTTCATTTGGCCTCATGCTCCACTCGCGCCGTTTTTTTCGCGGCG
ATCATCTGTTCGGGAGATGTTATCTCAGCGTCGCACAGCCCTCTGCCCCA
TCGTTCCACACCAGAGGTGATTCATTCATCATATCCCCCATCTATTGTCT
GCATCGATAGGAAGTATGAATCCGTTCATGCGCCGCCGCCGCCATCCGGT
TGCTGTTGTTGGATGCGCTCTTTCTATGGTTTGTATTTACTTCTTTTTGG
ATGTATAACTGGATGGATCCCGCACGTGAGTGACACCAGCACGAACATGT
CCAAGAAGAAAATGGCAATGTTTTATTTTTGTTTTTCATTTTTGTTTTTT
TGCTTTCTCGCTACGCTCTGTTGTGCTTCAGGAATTGGAGAATTACGTCC
ACTACTTCGTCCGCTGCAATGTACCCCAAGAGACGCGAGAAAAGTTCAAG
CTGGTGAGGGAGAGCAAGCAAATTGAAGAGGCTGTTTTATGTTACTTTCG
TGTGTGTGTGTGTGATCGCGCAACCGTCGTGTCGTCTTTCTTCGTGTTTT
TTTTTTTTTTTTTTTCCCCTTCTCTTTCTTGCCCTCGTCGATTGTCCGAA
GATTTAACTGTTATCTCAATATGTGGCTTTCATAATCAGCATTAGCTAAT
AAAGACGAAGCTCGTTTTAAGACGTACGGGGGGGAGAGCTGAAAAGACCT
TGCTTGCACGGGCACTATTTCGCACACATTCTTTTCCACTTCGCCGTTGT
GGATCTTGGCGTTCTTGCTGCCTCGTACCGTCCACCATGATGATCGCCCG
CCTACCCCAAACCCCAACACAAAACACAGGCTGTACACATGTCGGTGTAC
GACGGGGCGAAAGGAACAGCTCCGAGCGTAAAGGAAATCCCCCCCCTGCT
GTCTGGCTTTTTCAAGAGAGAAATCACCGCGAGGTACAACATAGAGGAGG
ATGTAGTGAGCGTGAAACCGACGCGTGCTCCCCCGTCCCGACCTGGATGG
GCGGCCGCCGCTGCCTCCGCCACCGCTGCGCAAGCGTCCACCGCTACAGC
AGGGAGCTCCAATGGGACCTACGGTAGCGGGGTTTACGGGGGGGGAGGGG
GTGGGTATGGAGGGTATGCTGCCCCTGCCGCCGTCGCAACGACGGGAGGG
TTTGAGGGAGGGGACTCCGGGGGCAGCACCCCCGGCGTGCAGGCCATGGC
CGCGCCGCCACTGCCGCCAAAGCCGAAGCCGCCGTCTGATCCTCAAGCTA
AGGTTTTGTATGATTATGATCCGGCCGGCCAGGAGGGTATGGTGCCTGTG
TCTGCTGGGCAGGTGCGTGTCTGTTTGTGTGTGGTGATGGGTGAGATGAT
GCTGTTCAATCGGACATGTCTAGTATCCTGTTCTTGGCTCTCTCTCTGTG
TGCCTGATTGTGCCGGTTCGGAGAGATTTTGTGCTTCAAGTACGTGTAGC
TATGGTAATGCGTGTCATGTTTCGAGGGAAAGAGTTGCAATATCAATCTC
ATGGTCTTGCCCCCCATCAAGTTTCGGTGTGTTGTATGAAATTGGGTTAT
GTTTGCTGCTGAAGAAAAGTACGCCACACGCAGGTTCGACACATAATCTA
TAGCTTCACTACAGCAGAGTGCATGTAGAGATTTGCCAAATGATAGACAG
GTACTGCATTTTTGGAGTCTTCTATCATGCTCTTTGGTCTCGTACAAACG
GTGCAGTGCGCTAGTGATACCCCTCCTGCTTCCCCCCCTCCGGCTCCATC
GTCCCGATAAACTCTTTAATCAACGGCTAATTACTATGGCATGCACAACA
TGGGTACGCCCTCCCCACCCCCTCTCTATCATGCTTTGTTCCACTGCCTT
ATAGGATATGCAAGCGTTGAATTCTCACATATTTTCGAGGACTCGCTACC
GAAGTGACATTTCGCACCCGTGTACACTCTCCGCGCTATTGGTTGTTGTG
ACACCATGCTAAATTGTAACACTGAAACACTCCACATGCAGATGGTGAGC
ATCAAAAGTCAGGACAGTCCTGATTGGTGGATGGCCGCCACTGACGACGG
ACGGGAAGGATGGGTACCTGCCAACTATCTCGAAATGCAGTGATATTTTG
GAACCCGTGCGATGCGATTATTATTTCAACTTTCGGTTTCTCAATGCTGG
TGAGGTGTTGGAAGCGATGCGACGGTGAGAGTGGAGATTGGGGGGGGAAG
TTGATGTGTGTTCTGGACTTCTTTTTTTTTTTTTTTTTTAATTTGTGCCT
TTTTCAATCCACTTGAGGTCTTGGCAGGATTCGAGTATGATTGGAATTAT
TTTCCGGGTGCAAGGCGTCATGGGTATGAAGGAGTTACCGTCTTCCCTAC
CCCTGGGGTCACTTGTTGGTGCTCAGGTGTTTTCCCTCGTAAAGGAGGTA
CCAGGAGGTGTATACTTTCTTGGAGATTGAGGTGGTAAGGCGAGCTTTAC
CACATACTTGTGTGCGTCTTTTATCACTCTTGATGAGGTGTTCATACTCC
GGTCTTTTGGGGGGATTCGCCTAGGGTGTCTCTCAGTTATTGATTGAGTA
GCAATTGTTTCCCGTGTGTTGTTTTTGATGGGAAGTCGAGAGCCTGAAAG
CACAAATATCTCTACCGTGGTGCCGCTTATGGCGGTGTTCGTCGACCCCG
TATCTATGAGTCGGGTGTGTAACGCGTTTCTCTTGTCTCGAGTAGCCATT
TCGGTCGTGTGTTCACCAGGGGGACAGATTTGTCGTGACAACATGTTGTT
GTTATAGACACGTTCTCGGAACATATCTCGGGCTTCTTGCTGTTAACCCT
GGCTAGAGAAAACCAGTGTTGTGATGATTTATCAACATTGTTTTTAATTG
TTCTAAGAAAGGTGGTGTTGTCGTTTCGGTGAAAACGTAGTTTATAAGGA
CTACGAACTAAACGCGCGGTTGTTATGTATAAGATATTTGAGTGTTTCCT
TGTTAGTCGTGTTGCCCCGTGTTGAGTTTTTTTTTTTCGTTATTTGTACC
GTGCGTTGTATGATACACAGCACAGTAAATGTGTGAATTTATGATATAGC
CAGTCGTTCTTGTTGGGCCAGGGTGGTTGTCTTCGTGACTGTGGAGGCGA
GAGCGAGGGAAAAACAGTGGAAAACGGGGTCAGGGGGTGGGGGTTATTTG
CGCTGTGATGAACGGGACTTGGAGGTGTGGGTTGCGAGCCTACGCGACGT
GCATGGTATAGCATACCGTACTGGTAGGATGTTCCTCTCAAGGCTGTTGC
GTGATGAGTGATGCGTAGTGCACAATTGCAGCTCTGCGGTGAACAACGTA
ACTTGCGGCTCGGCTCTTGCCCTTTGGACTACTACACTGGCTTGTGTACT
CGATAGGGGGCCAAGGATTTTGATCCTCTGCTTGGATGGAGGACAAGAGG
AACCGCATGGCGTTTTCGCCGATGTTGTATGACTAGGAAAAGTGTTCTGA
ACAGAGTGGCCGAACGGCGATATTGTCATGGTGGTCCGGGTAGATGGCTG
TTGGCCTGTTGGTGATGTGTATGAACGGTCGATTCTTCATAGTCCTAGCT
CTAGCTGTACTGTTGACCTGTCAAGATCACCTATTGCTTTCCAACTTGCG
TCGCCCTTTTTTTCTTGTCCTTAATTAAGTCACTGTGCGTAGTTCTTCCT
CCTGCAGATTGACTAGAGATCCGTTGTCATTATTTGCCAAGGGCGCCGTT
AAACGATGAAAGAGAACTAGTCTGAGTTCATTCATTTCCCGTCCCTGGGC
CACAGCTCGCTTGTTATCATGCATCCGATCCTCTTCTTTCCGTTTCACTT
CATGGCTATGAGCCAACTCACTGTACAACAAAAACGAGACTCTTTCGGGG
TGGATAGCGGGGTCCAACGGTCCCCGCTCTACATTTTGTCATGTGCGTTG
TTTGGTGTCCTCTGTGGGTGTTCATTGTGTTTGGGCGGGTGGATGCCCGT
ACATGCTGTCGTAGGTAACCATTGTTGCCAAGTTCGTTTCTTCGCGAACA
AAAATATTCTTTGCCTTGACGTCTGCACCAGACGCTTGTTTCTGGAGCGA
TATCATTGGTGGTCTGGGTATTCTATAGCACCACAAGTACGTGTTGGGTT
TTCTATAGCTCCCCCGGTTTTTGTCTCTCGCGATAGAGACACATGTTACA
GTTGCGGCCACGTCGTTTGGTGGGTTAATTCCGTGACCGACTTTGATTCC
CCCAAAGCTGATTGGACAACACGCTAGCGCGTAGTCCCATGTGTTTCTTC
AAGACATTATTTTGATCTCTACGCATAACAGTAGGTCCCGTTGGTTGCTA
AGTACAGGGTTCACAATTACAACCGGGTACCAGTGGGGAGCAGAAAAATG
GCAATCTCCCGAAAATTTATCGAGCCCAGAACACGCGCTCTCGGCCAAAA
GAACACATCAACCGTTTTGTCCATGTATTCGTCCATCAAGTGTTCATGGT
TGCGTGCAGAAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig9614:3123..8587-

>mRNA_H-paniculata_contig9614.17315.1 ID=mRNA_H-paniculata_contig9614.17315.1|Name=mRNA_H-paniculata_contig9614.17315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1824bp|location=Sequence derived from alignment at H-paniculata_contig9614:3123..8587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTTTCTGGGCTTAAGGGGGAGGCGAAGAAGCAATTCAAGAATCT
TCTTGGATATTGCGGGGATCGCAAATATCAGTATCCGGATGCGCTCATTC
GGGACATTGCGGCGAAAGATGGACGTTTCTGGGCTTAAGGGGGAGGCGAA
GAAGCAATTCAAGAATCTTCTTGGATATTGCGGGGATCGCAAATATCAGT
ATCCGGATGCGCTCATTCGGGACATTGCGGCGAAAGGGTTGGAGATGACC
GAGCTGCGAGGAGAGCTGTACGTCCAAGCGATGAAACAGCTCACCAAAAA
TCCCACCCCGGCCTCGCAGGACCGGTGTTGGGAAGTGATGACTTTCCTGT
TGCACTGCTTTCCTCCTCCGAAGGGTTGGAGATGACCGAGCTGCGAGGAG
AGCTGTACGTCCAAGCGATGAAACAGCTCACCAAAAATCCCACCCCGGCC
TCGCAGGACCGGTGTTGGGAAGTGATGACTTTCCTGTTGCACTGCTTTCC
TCCTCCGAAGGAATTGGAGAATTACGTCCACTACTTCGTCCGCTGCAATG
TACCCCAAGAGACGCGAGAAAAGTTCAAGCTGGAATTGGAGAATTACGTC
CACTACTTCGTCCGCTGCAATGTACCCCAAGAGACGCGAGAAAAGTTCAA
GCTGGCTGTACACATGTCGGTGTACGACGGGGCGAAAGGAACAGCTCCGA
GCGTAAAGGAAATCCCCCCCCTGCTGTCTGGCTTTTTCAAGAGAGAAATC
ACCGCGAGGTACAACATAGAGGAGGATGTAGTGAGCGTGAAACCGACGCG
TGCTCCCCCGTCCCGACCTGGATGGGCGGCCGCCGCTGCCTCCGCCACCG
CTGCGCAAGCGTCCACCGCTACAGCAGGGAGCTCCAATGGGACCTACGGT
AGCGGGGTTTACGGGGGGGGAGGGGGTGGGTATGGAGGGTATGCTGCCCC
TGCCGCCGTCGCAACGACGGGAGGGTTTGAGGGAGGGGACTCCGGGGGCA
GCACCCCCGGCGTGCAGGCCATGGCCGCGCCGCCACTGCCGCCAAAGCCG
AAGCCGCCGTCTGATCCTCAAGCTAAGGTTTTGTATGATTATGATCCGGC
CGGCCAGGAGGGTATGGTGCCTGTGTCTGCTGGGCAGGCTGTACACATGT
CGGTGTACGACGGGGCGAAAGGAACAGCTCCGAGCGTAAAGGAAATCCCC
CCCCTGCTGTCTGGCTTTTTCAAGAGAGAAATCACCGCGAGGTACAACAT
AGAGGAGGATGTAGTGAGCGTGAAACCGACGCGTGCTCCCCCGTCCCGAC
CTGGATGGGCGGCCGCCGCTGCCTCCGCCACCGCTGCGCAAGCGTCCACC
GCTACAGCAGGGAGCTCCAATGGGACCTACGGTAGCGGGGTTTACGGGGG
GGGAGGGGGTGGGTATGGAGGGTATGCTGCCCCTGCCGCCGTCGCAACGA
CGGGAGGGTTTGAGGGAGGGGACTCCGGGGGCAGCACCCCCGGCGTGCAG
GCCATGGCCGCGCCGCCACTGCCGCCAAAGCCGAAGCCGCCGTCTGATCC
TCAAGCTAAGGTTTTGTATGATTATGATCCGGCCGGCCAGGAGGGTATGG
TGCCTGTGTCTGCTGGGCAGATGGTGAGCATCAAAAGTCAGGACAGTCCT
GATTGGTGGATGGCCGCCACTGACGACGGACGGGAAGGATGGGTACCTGC
CAACTATCTCGAAATGCAGTGAATGGTGAGCATCAAAAGTCAGGACAGTC
CTGATTGGTGGATGGCCGCCACTGACGACGGACGGGAAGGATGGGTACCT
GCCAACTATCTCGAAATGCAGTGA
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