mRNA_H-paniculata_contig961.17310.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig961.17310.1
Unique NamemRNA_H-paniculata_contig961.17310.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: D8LQT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQT6_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 8.110e-57
Identity = 118/178 (66.29%), Postives = 142/178 (79.78%), Query Frame = 3 
Query:    3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDV--NAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPLPLSREEIEAKLPSA 530
            YIGVFG+PANK+AGG++GE I+MTAPVVTG P+ + XXXXXXXXXXXX      G+    MQFIMP++FK ISDLPTPTDSRV+LREVPE  YLV QF+GNMG+    +A AE  R++A E V  + GGAF+EYV  D+KFLVARY+PPWT+PFL+TNELWFP+PLS  E  AKLP+A
Sbjct:   55 YIGVFGNPANKVAGGDAGENIAMTAPVVTGDPTPDXXXXXXXXXXXXXXX----GTGTSTMQFIMPKQFKRISDLPTPTDSRVSLREVPEAVYLVHQFSGNMGRGDGHDAIAERERIVAVEKVASE-GGAFSEYVSADSKFLVARYDPPWTLPFLRTNELWFPVPLSPTEATAKLPTA 227
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A166AQM7_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166AQM7_DAUCS)

HSP 1 Score: 90.1 bits (222), Expect = 5.500e-17
Identity = 73/163 (44.79%), Postives = 96/163 (58.90%), Query Frame = 3 
Query:    3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKI-MQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
            YIG  G+P NK       E I+MTAPV+T     + XXXXXXXXXXX  + G  GS+  I MQFI+P K+K   + P P D RV +RE  E  Y V +F+G   ++V   AE V  L  E +++D      + VG   +FL+ RYNPPWT+P  KTNE+  P+
Sbjct:   58 YIGALGNPQNK-----KPETIAMTAPVIT----QKXXXXXXXXXXXXTNSGGDGGSEGVIVMQFILPDKYKKAEEAPEPVDERVVVREQGERKYAVVKFSGTATEEV--VAEKVGKL-REWLERDG----VKVVG---EFLLGRYNPPWTLPRFKTNEVMIPV 201
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A6J0JCA9_RAPSA (heme-binding-like protein At3g10130, chloroplastic n=13 Tax=Brassiceae TaxID=981071 RepID=A0A6J0JCA9_RAPSA)

HSP 1 Score: 90.5 bits (223), Expect = 8.330e-17
Identity = 72/164 (43.90%), Postives = 92/164 (56.10%), Query Frame = 3 
Query:    3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKI--MQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
            YIGVFG P N     +  E+I+MTAPV+T     +  XXXXXXXXXXX   G  G + K   MQF++P+ +K   D P PTD RV ++E     Y V  F+GN       AAESV     E VKK       +      +F++ARYNPPWT+P  KTNE+  P+
Sbjct:   91 YIGVFGKPEN-----QKPEKIAMTAPVIT-----KEGXXXXXXXXXXXXXGGGGGEEKKTVTMQFLLPEMYKKAEDAPRPTDERVVIKEEGGRKYGVVTFSGN-------AAESV---VSEKVKKLRSDLERDGFKITGEFVLARYNPPWTIPPFKTNEVMIPV 234
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A199VJZ7_ANACO (Heme-binding-like protein, chloroplastic n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A199VJZ7_ANACO)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-16
Identity = 68/162 (41.98%), Postives = 91/162 (56.17%), Query Frame = 3 
Query:    3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
            YIG  G P N        E+I+MTAPVVT         XXXXXXXXXX + G  G +A  MQFI+P ++++ ++ P P D RV +RE  E  Y V +F+G        A E V     E++KK       +  G   +FL+ARYNPPWT+P L+TNE+  P+
Sbjct:   58 YIGALGAPRNA-----KPEKIAMTAPVVT---KTSAAAXXXXXXXXXXTSGGGGGGEAVTMQFILPARYRAAAEAPRPLDERVVVREEAERKYAVARFSG-------VATEKVVAEKVESLKKSLERDGYKITG---EFLLARYNPPWTLPPLRTNEVMIPV 201
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A7S4F7T4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F7T4_CHRCT)

HSP 1 Score: 89.4 bits (220), Expect = 1.190e-16
Identity = 72/179 (40.22%), Postives = 98/179 (54.75%), Query Frame = 3 
Query:    3 YIGVFGDPANKIAGGESGEQISMTAPVV-TGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDV--NAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPLPLSREEIEAKLPSA 530
            YIGVFG P N   GG S   I+MTAPVV +G P    XXXXXX              D K M FI+P +F+S++D P+PT+  V+LR++         F+G+  +D       E   LL+E+ +   +G A         K+ VARYNPPWT+PFL+TNE+  P+P      E+ +PSA
Sbjct:   58 YIGVFGTPEN---GGSSA--IAMTAPVVNSGMPXXXXXXXXXX--------------DGK-MAFILPARFQSVADAPSPTNPLVSLRQIESRVMAALTFSGSANEDSVHRKLKELQALLSEKGIAMKDGAA--------PKYEVARYNPPWTLPFLRTNEVLIPVP------ESAVPSA 202
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A833R6P0_9POAL (Heme-binding-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R6P0_9POAL)

HSP 1 Score: 88.6 bits (218), Expect = 1.710e-16
Identity = 64/162 (39.51%), Postives = 83/162 (51.23%), Query Frame = 3 
Query:    3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
            YIG  G P N        E+I+MTAPV+T            XXXXXXX      G     MQF++P K++ + D P PTD RV ++E  E  Y V +F+G M  D     E VR L E   +  + G           FL+ARYNPPWT+P L+TNE+  P+
Sbjct:   58 YIGALGQPQNS-----KPEKIAMTAPVIT-------KTSPEXXXXXXXXXXXXTGDGMVTMQFVLPSKYQKVDDAPKPTDERVVIKEEGEKKYAVVRFSG-MATD-KVVEEKVRKLKESLERDGHKGV--------GDFLLARYNPPWTLPPLRTNEIMIPV 197
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: UPI001F5CDDB5 (heme-binding-like protein At3g10130, chloroplastic n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDDB5)

HSP 1 Score: 89.4 bits (220), Expect = 2.000e-16
Identity = 78/180 (43.33%), Postives = 98/180 (54.44%), Query Frame = 3 
Query:    3 YIGVFGDPAN----KIAGGESGEQISMTAPVVTGP-------------PSLETXXXXXXXXXXXXQTSGAPGSDAKI-MQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
            YIGVFG P N    KIA G   E+I+MTAPV+T                   + XXXXXXXXXXX   G      K+ MQF++P K+    + P PTD RV LREV E  Y V +F G  G  V   AE V  L + A++KD         GP   F+++RYNPPWT+P L+TNE+  P+
Sbjct:   63 YIGVFGKPQNTKPEKIASGGEPEEIAMTAPVITSSGXXXXXXXXXXXXXXXSSEXXXXXXXXXXXXXEGREEQAGKVTMQFLLPSKYGKAEEAPRPTDERVVLREVGERKYGVVRFGGLTGDKV--VAEKVEGL-KAALEKDGH----TITGP---FVLSRYNPPWTLPPLRTNEVMIPV 232
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: UPI0009E2B2B6 (heme-binding-like protein At3g10130, chloroplastic n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2B2B6)

HSP 1 Score: 87.8 bits (216), Expect = 3.100e-16
Identity = 67/162 (41.36%), Postives = 91/162 (56.17%), Query Frame = 3 
Query:    3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
            YIG  G+P N        E+I MTAPV+T          XXXXXXXXX  SG  GS    MQF++P K+    D P PTD RV +REV E  Y V +F+G +  +  AA  + +L   +++++D      E+V       +ARYNPPWT+P L+TNE+  P+
Sbjct:   57 YIGAVGEPQNSRP-----EKIPMTAPVIT-------HSAXXXXXXXXXXXSGGGGSTPITMQFVLPAKYARAEDAPQPTDERVRIREVGERKYGVVRFSG-VATETTAADRAEKL--RKSLERDGYKLVGEHV-------LARYNPPWTLPPLRTNEVMLPI 196
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A803LUY4_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LUY4_CHEQI)

HSP 1 Score: 87.8 bits (216), Expect = 4.150e-16
Identity = 72/168 (42.86%), Postives = 97/168 (57.74%), Query Frame = 3 
Query:    3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXX--QTSG-APGSDAKI--MQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDV-NAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
            YIG  G+P N  A     E ++MTAPVVT   + +  XXXXXXXXXXX  Q  G A G + K+  MQFI+P K+K + D P P D RV ++E  E  Y V +F+G     V     E +R+    A++KD      E+       L+ARYNPPWT+PF +TNE++ P+
Sbjct:   58 YIGALGNPQNNKA-----ESVAMTAPVVTQSKAEDVGXXXXXXXXXXXXEQRGGVAEGGEKKMITMQFILPDKYKRVEDAPKPLDERVVIKEEGERKYGVVKFSGVASDGVVKDKVEGLRI----ALEKDGYKVIGEH-------LLARYNPPWTLPFCRTNEVFIPV 209
[Close]
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: UPI000B8CA61E (heme-binding-like protein At3g10130, chloroplastic n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CA61E)

HSP 1 Score: 87.8 bits (216), Expect = 5.500e-16
Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 3 
Query:    3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
            YIG  G+P N        E+I+MTAPV+T      TXXXXXXXXXXXX+  G   + A  MQF++P K++   + P P D RV +RE  E  Y V +F G   +DV    E V  L  ++++KD      E       FL+ARYNPPWT+P L+TNE+  P+
Sbjct:   79 YIGALGNPQNA-----KPEKIAMTAPVIT---QSSTXXXXXXXXXXXXKGGGGGENKAVTMQFLLPAKYQKAEEAPKPLDERVVIREEGERKYGVVRFAGVATEDV--VNEKVNKL-RKSLEKDGYKVIGE-------FLLARYNPPWTLPTLRTNEVMIPV 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQT6_ECTSI8.110e-5766.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A166AQM7_DAUCS5.500e-1744.79Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A6J0JCA9_RAPSA8.330e-1743.90heme-binding-like protein At3g10130, chloroplastic... [more]
A0A199VJZ7_ANACO1.020e-1641.98Heme-binding-like protein, chloroplastic n=3 Tax=A... [more]
A0A7S4F7T4_CHRCT1.190e-1640.22Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A833R6P0_9POAL1.710e-1639.51Heme-binding-like protein n=1 Tax=Carex littledale... [more]
UPI001F5CDDB52.000e-1643.33heme-binding-like protein At3g10130, chloroplastic... [more]
UPI0009E2B2B63.100e-1641.36heme-binding-like protein At3g10130, chloroplastic... [more]
A0A803LUY4_CHEQI4.150e-1642.86Uncharacterized protein n=2 Tax=Chenopodium quinoa... [more]
UPI000B8CA61E5.500e-1643.21heme-binding-like protein At3g10130, chloroplastic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig961contigH-paniculata_contig961:488..5795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue1.4e-38
Seed eggNOG ortholog2880.D8LQT6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SOUL heme-binding protein
EggNOG OGs28MKZ@1,2QU4S@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1833
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig961.17310.1prot_H-paniculata_contig961.17310.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig961 556..4495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.2944539-UTR-H-paniculata_contig961:487..5551622931192.2944539-UTR-H-paniculata_contig961:487..555Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig961 488..555 +
1691481631.8810284-UTR-H-paniculata_contig961:487..5551691481631.8810284-UTR-H-paniculata_contig961:487..555Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig961 488..555 +
1622931192.3937893-UTR-H-paniculata_contig961:4495..57951622931192.3937893-UTR-H-paniculata_contig961:4495..5795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig961 4496..5795 +
1691481631.9318893-UTR-H-paniculata_contig961:4495..57951691481631.9318893-UTR-H-paniculata_contig961:4495..5795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig961 4496..5795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.3163981-CDS-H-paniculata_contig961:555..5981622931192.3163981-CDS-H-paniculata_contig961:555..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig961 556..598 +
1691481631.8925526-CDS-H-paniculata_contig961:555..5981691481631.8925526-CDS-H-paniculata_contig961:555..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig961 556..598 +
1622931192.3310757-CDS-H-paniculata_contig961:1182..12911622931192.3310757-CDS-H-paniculata_contig961:1182..1291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig961 1183..1291 +
1691481631.902325-CDS-H-paniculata_contig961:1182..12911691481631.902325-CDS-H-paniculata_contig961:1182..1291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig961 1183..1291 +
1622931192.3515236-CDS-H-paniculata_contig961:1858..20681622931192.3515236-CDS-H-paniculata_contig961:1858..2068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig961 1859..2068 +
1691481631.9126413-CDS-H-paniculata_contig961:1858..20681691481631.9126413-CDS-H-paniculata_contig961:1858..2068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig961 1859..2068 +
1622931192.3739731-CDS-H-paniculata_contig961:4392..44951622931192.3739731-CDS-H-paniculata_contig961:4392..4495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig961 4393..4495 +
1691481631.9235675-CDS-H-paniculata_contig961:4392..44951691481631.9235675-CDS-H-paniculata_contig961:4392..4495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig961 4393..4495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig961.17310.1

>prot_H-paniculata_contig961.17310.1 ID=prot_H-paniculata_contig961.17310.1|Name=mRNA_H-paniculata_contig961.17310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MTAPVVTGPPSLETGAKISMTAPVVTQTSGAPGSDAKIMQFIMPQKFKSI
SDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVK
KDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPLPLSREEIEAK
LPSA*
back to top

mRNA from alignment at H-paniculata_contig961:488..5795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig961.17310.1 ID=mRNA_H-paniculata_contig961.17310.1|Name=mRNA_H-paniculata_contig961.17310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5308bp|location=Sequence derived from alignment at H-paniculata_contig961:488..5795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTACATCGGTGTCTTCGGAGATCCTGCCAACAAGATTGCAGGAGGCGAA
TCCGGAGAGCAAATATCGATGACCGCACCTGTCGTGACTGGACCTCCTTC
GTTGGAAACCGGTGAGACTTACGTGTTGGTATCGTCGTAACACATACACT
GTGAAATTTAACCCTTTCGGAACATGGTCATCTGAAACCTTCAGTTGGAA
TTTTCTCTTCGTGCGATGTAAAATAGGTTAAAGCAGGCCTCGAGACGCAA
CCCGTGCGAGATAGACACTTTTTTTGCGCACTCAAATCTGCTTTCAGGCA
TTCATTCTGAACGCTCCAACAAAAACTCGTGTTTGTCAACACGAATCAGA
TGTACTTGCAAATCTTCTTAGAGACGATGTTCCAATTAGTATCGTGTCCC
GAAGGGGTTGAAAGGTACTTCTGATATTCTTGTGTAATTGTTTTTCAACA
CCGTGCGCAGACTCGGGTATGGCATGGTGCAACCGTGGAAAAAACAAACT
AATTTTACGATCACATGTAACTTTTTTTTTTTCTTTTTTTTGACATAATC
GCGCGTCGTTCGTCACAGATTACAGTCGCGCGTTAGATAATATAGGTGGT
TTGTCGTCCCATTCACCTCAATATCAACTCTACATAGCTCCACAATTAAA
CCTCATTTTTTTTTTTTTTTTTTGTCATGACGTTGAGAAATATAGGAGCC
AAGATTAGTATGACGGCTCCAGTGGTGACTCAGACCTCTGGCGCTCCTGG
ATCCGATGCGAAGATAATGCAGTTCATCATGCCGCAGAAGTTCAAAAGCA
TCAGGTATGGTGCATGTCTTGTTATGTCCTACTCTTGTGTGATCCTAGGG
TTTTCGGTTGTTAGTGCTTGTTTCGTTTTTGTCAAATCCCAGGTTAAAAG
GTTGTGATAACATTGGCGTTGACCAGCGATGTACGTATATATATATATAT
ATATATATATATATTTGCGAAGCAAGAGATGAACCGTCGTTTGATTTTTT
TTTTTTTCGTGCGAGTCTGATGAATAACCGAAGTTGTACTGTTCACTCCG
CCTTTTTGTTTGTTCATTGTTTTCGCTATATTAATAAAGACTTTGTGAGA
GTTACACTTGAATCAGTAATCAGACAGCTGACCATGCGGCCAAGTTGCCC
TTTGCACTATTGAACCGCTTCATCAACCCCCCTCGCCTAGTTATTACTAT
GTCGTCCACTTAAATTGATCTAGCGTAGGATTATTGTACATCAAATAACT
CCCCCTCCCCACCCTTTTCGAGGGTGCGCGGTCAATGGCCCAGCAATTAC
AGCACAGCATCTAAAACAGTAGTACCCCCCCCCCTGCCGCCGCCGCCGGA
TCCCGCGCCCCGATTCAACAGCGATTTACCCACACCGACAGACAGCAGAG
TAACGCTGCGCGAGGTGCCGGAGCTCAGCTATCTGGTGTGGCAGTTCACT
GGCAACATGGGGAAGGACGTTAATGCTGCAGCCGAGAGTGTGCGTCTGCT
AGCCGAAGAGGCTGTCAAGAAGGACAACGGGGGGGCCTTTGCTGAGTACG
TCGGACCTGACGCAAAGTTCTTGGTTGCCAGGTGTGTGTGTGTGTGCGCG
CGCGTGCCATGTGAGAAATGCAGGAAATCTGTATTTTGCTGGATAACTTT
TTTCACATTTCTAATCACAAACCAGACGGTGATAACTCCTCAGCGAAAAA
AATCGTGACTACTAGTAGGGGGCGAGTCCGTTAAGCTGAAGTAGGGGTCG
ATCCTCTGTAGCACACGGCATTATGCATGTATGCACATCGTTTAACAGCG
CAAAACATAAATCAGACCGGAGAAAAATTGAGGCTTCGTTCCGCTCTATC
AAGGCGAGGAGGGTTGGAAGGAGTCGTTTCTAGTCGTCGGGAGGATATCC
ATCGGTGCCAGATTAGTGGAAATATAGCTCAACATCATCGTTCAATGTCT
GATGAGAGAGAATTAAAATTTTAAGTTAGCCTACCTGCAAGTATCGTCTT
TAGAACCGGTTTTACGGTTTTGCGGGCTCACCTGGGCGTGGTGTAGTCGA
TGCGTTGTTTTGCAGATCAATTGGCAGCAGCGGGCACACATGCGCGGGTA
TATGCCATATTTTAAAAGTTTATACGGATCAGGAGGGACCAAAGGACTGC
TAACGCTAGCGGTTGCTGGCTATCCCCGATGATCAAGTTACTAAAGTGAT
CAAAAGTCGTAAGGAGGGGTAGACTGAGAGTATGTGAATGTAGGCTCTAA
CAGGCGAACGTTGGAGCCGGTATTTACTGGCAGTGTGTTTATTGTACACC
GGGTAAAAATTGGCACACGATGAAAAGTGTGATGGAGTGGAGCTTGAAAA
AACCCAAGCAAACGCGGTTCAGCTAACCAACGTCTGATGGATCAAAATTG
CCCGTCAACGTGCAAGTACTGGTCTTCTCCTGCGGGTAGTACGAAGCAAA
CCAATCCATTTCGTCGTTGGCTCTTACAGTTGTCATTCACCTACAAGTAG
TCCTCTCATCTACCTACTTGTGCCGGAATTTTCACCTGTACTGTCGGAGG
TACCGCTGTACAGAAATTGTGTGTGTGTGTGTGTGTGTGCTTTTTCCCTA
GAGCATCTGGAGACTCGGAAAAAAGATGGTAGAGGGGAAAACGGTCATTT
ATCTGCAATGACTTGCAATTGTTGGGTGTCCGTGGTATCAAGCGGTCTGT
CATGTCCTTCGACTAGATGACCAAAAAAGGGTACTATTTCTCTCTTTAAA
AGGGGTGGTATCTATCGTACGTGTATCCGAAATTTCCATGTTACCCTTCG
GATCCATATGAAATAATGGGCTGTGTGGTGGTTGTTTCGGAATGGAAACG
AATTTCCGCACTTTGTCCAAGTATTTTTGCGAGTGGGTTTTTACCATTTA
TTTTTTATAATACATGGACATATTTTTCTTGCTTTCTTGAGAGTCTGGAG
GAAACCTGAACCCAACGCTCAGCCCCGGAACCGGGCTCGTGTGCCAGTTA
CTCCAAGACCGGGCTAGCCCGTCTTGCGACGGTTATGTGAGATAAGGCAC
CCTGAACGCTAGCATGACTTTGCTCAGGGTAATGTGAGACCTGCACCCCC
TAAACTCCCCATACTTGTGGCTTCGATCTTACAAGTGTGGAACATACATG
CGAAGTATCATTAAAATATATATATAAATATATATTATAAGCACAAAAAT
CCCCAACGGTTTGTTTACTGCGTATCAATCAACTCCAAAAACCTCGTGGG
CATCAAAACGCTTGATTCCTAAGTTGATACTCGACCAGTCTGCGATGCAT
GTACTCTCTGAACTGTTTTTGCAAGGTTGACGAAATTTGCTTGTCCACGC
GCCGTATCTTCTGGCGCATGCGCCAGACGTGTATTTTGCTCAAATCCGTG
TCCACTGGCGACCTGATTCGAGTCCTGCCAACGCACATTATGCCTCGAGG
GGGTGGGGGATTAGGGTTGTGGCCATGGTTACCGTCAGTTGAGGGGTTAG
TTCTGCTCGCGCCAGAGCAACCCAGAGCGTGGACCATAAAAACTGAAGAC
CTGGTATCGACGGTTGTTTTTGGCTTCGTGGGTGAAAAGGCCTCGCCGAA
CATGCGAGGGTGAGGTTTTCAACCCGAATCGGGTCCGTACACATGAAATG
AAAGTTGGCCGCATAGCCTCCTTCTTCTCCATCTCAACGACCTCCAATGC
TATCGGGAATCGCGCTGATAGCCACAAAGCTCTGTCTTCCTGAGAACGCG
TAGTAAATAAACGGTCTATCAACTGCGGCAGCACGCCAAGCATCATGAGT
ACCCCTCCCTTACGGATTGCACATGTAGTGCAGTCATAATATGAGGTCCA
GAGAGATAGTTCAACTGATGAGTACCTCTTCCCCCCTCGATGTGAATGTT
GACAGGTATAATCCCCCCTGGACTGTCCCTTTCCTGAAGACTAACGAGCT
TTGGTTCCCTCTGCCGCTTTCAAGGGAGGAAATCGAGGCAAAGCTGCCCA
GCGCGTGAACCAAGTGCATTTCAGGATAAAAGAAGCTCGTGTTTTTTTTT
TGTTTTTGTTTTCTCGAGATGCCCACGTGCTCGTGTTTATTAACGTTAGA
TACATTCATTATTTTGACCTCGGCATGAAGCAGATAGATAGACGTACCCA
CGTACATACGGTAGGGGGGACATGCAGCTTTGCGTATTTTCTCGCTTTTG
TCTCGTTCGGGGGTAGAGGGGGAATCGGGAGGACTTGTAATGTTTGGCAG
GCCTTGCAAAAGCTCTAGGGCGATTGACCGGGCTTCATTTGTCCTCAGGA
GGACGGAGTCAAGGAGCCCTTGGCGGAGGGAGAAGGAGGGAGGAGTTTTC
ACATTTTGCATGCTGTAGTTGGTGAGTGATTTGACCACCAGGCCTCCTGG
GGAAGAGGAGGGGAGGTCAAGGGGGAAGAAATGTTTATTGGACGTATATG
TTGAGGCTGTGCGGCCCAACTGAAGCCAAAGCTACGTACACAGAGCTACG
AGCAGAATCATCACGAATACGGGGAAGAAATTCGTAGGCGTTATGAGAAA
GAGGCTTGCGCTTTGACTGTGTATTATATCTGTGAACAGGAGGGGGGCGG
CGGTCAGGCTTGGCAACGTTGAACGTTGGGCAAACAAACGCGTCTGTCTC
TGGAGTAGGAAATATTTTAACAACGTGTGCCTGTGGTGTTGGTTGCCTGG
AGAGTGCCGTTTTGAGCACTTGCAGCCTCGATACCTGACCCTTAGTGTAC
ATATAATATGATTCCCCCCCCCCGTGTATACATAATGTATACGTCCTTGT
GTGTCATGCCTTGGTGACAAATGATGGTGTGCTAATTTCGGGACAATATT
TCGCTGTTGAGGTTTTTTTGAGTCGTTTTTTTTTTTTTTTTTTGATAGTG
GTCACTCTCAGGGCTGCATGTGCGCGCTGGCTGTACGACATGGCCATGCA
TTTATTTCTCAGCACGTATGGCAACTGGTTTGGAAATGGACGTGGTACTG
ATCGGAGGCAGGGATGGAACATGACCAAACTGGGGTGAACTCTGGCGTGA
TCCACCTACTAATCATTACCATGCGTTCTGTGGTCGAAGTGACGGGAGTT
CAATTTTTGGGACAAATAAGCTTTCTTGTCGACAAATAACACATGAGTAC
GAGAAAACTGGCATCGAAGGGAGAATGCTCGTCAGATTACATTGCCGTCA
ATTCCACGGTTAAGACGAGAGAGGTAATTGCTCCCCCGCCCCCCCACCGC
GGTATAATACGAGGGACGAACGAAGACATTACTAGCACTTCCAGCTGTGT
GACCGATC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig961:488..5795+

>mRNA_H-paniculata_contig961.17310.1 ID=mRNA_H-paniculata_contig961.17310.1|Name=mRNA_H-paniculata_contig961.17310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig961:488..5795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGCACCTGTCGTGACTGGACCTCCTTCGTTGGAAACCGATGACCG
CACCTGTCGTGACTGGACCTCCTTCGTTGGAAACCGGAGCCAAGATTAGT
ATGACGGCTCCAGTGGTGACTCAGACCTCTGGCGCTCCTGGATCCGATGC
GAAGATAATGCAGTTCATCATGCCGCAGAAGTTCAAAAGCATCAGGAGCC
AAGATTAGTATGACGGCTCCAGTGGTGACTCAGACCTCTGGCGCTCCTGG
ATCCGATGCGAAGATAATGCAGTTCATCATGCCGCAGAAGTTCAAAAGCA
TCAGCGATTTACCCACACCGACAGACAGCAGAGTAACGCTGCGCGAGGTG
CCGGAGCTCAGCTATCTGGTGTGGCAGTTCACTGGCAACATGGGGAAGGA
CGTTAATGCTGCAGCCGAGAGTGTGCGTCTGCTAGCCGAAGAGGCTGTCA
AGAAGGACAACGGGGGGGCCTTTGCTGAGTACGTCGGACCTGACGCAAAG
TTCTTGGTTGCCAGCGATTTACCCACACCGACAGACAGCAGAGTAACGCT
GCGCGAGGTGCCGGAGCTCAGCTATCTGGTGTGGCAGTTCACTGGCAACA
TGGGGAAGGACGTTAATGCTGCAGCCGAGAGTGTGCGTCTGCTAGCCGAA
GAGGCTGTCAAGAAGGACAACGGGGGGGCCTTTGCTGAGTACGTCGGACC
TGACGCAAAGTTCTTGGTTGCCAGGTATAATCCCCCCTGGACTGTCCCTT
TCCTGAAGACTAACGAGCTTTGGTTCCCTCTGCCGCTTTCAAGGGAGGAA
ATCGAGGCAAAGCTGCCCAGCGCGTGAGTATAATCCCCCCTGGACTGTCC
CTTTCCTGAAGACTAACGAGCTTTGGTTCCCTCTGCCGCTTTCAAGGGAG
GAAATCGAGGCAAAGCTGCCCAGCGCGTGA
back to top