mRNA_H-paniculata_contig9600.17307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9600.17307.1
Unique NamemRNA_H-paniculata_contig9600.17307.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: A0A2G8KJ37_STIJA (DEAD domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KJ37_STIJA)

HSP 1 Score: 56.6 bits (135), Expect = 5.950e-7
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:  127 SGQGSHVDPAKDTDVEKQLESHQLKLSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            +GQ S + P   +  E       L LS +G+PE +++ Y   GV+ +FPWQA CLR   CK   GGNL+Y
Sbjct:  285 NGQRSPISPPPTSTQEC------LSLSSWGLPEAVLNQYYLMGVQNMFPWQAQCLR--KCKVLQGGNLIY 346
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BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: A0A5E4M187_9HEMI (DNA-directed DNA polymerase, family A, palm domain,Helicase, C-terminal,Ribonuclease H-like n=2 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4M187_9HEMI)

HSP 1 Score: 53.5 bits (127), Expect = 8.030e-6
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:  202 LSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            L  +G+P Q+VD+YKKRG+  +FPWQ  CL  D      G NLVY
Sbjct:    8 LDSWGLPPQIVDNYKKRGIVSMFPWQVECLTCDGVLD--GQNLVY 50
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BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: J9M4Q5_ACYPI (Uncharacterized protein n=13 Tax=Aphidinae TaxID=133076 RepID=J9M4Q5_ACYPI)

HSP 1 Score: 52.0 bits (123), Expect = 2.780e-5
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  202 LSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            +  +G+P+Q+V++YKKRG+  +FPWQ  CL  D      G NLVY
Sbjct:    8 IDSWGLPDQIVENYKKRGIVSMFPWQVECLTSDGVLD--GRNLVY 50
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BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: UPI0007637EF3 (DNA polymerase theta n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI0007637EF3)

HSP 1 Score: 50.8 bits (120), Expect = 7.120e-5
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  202 LSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            +  +G+P+Q+V++YK+RG+  +FPWQ  CL  D      G NLVY
Sbjct:    8 IDSWGLPDQIVENYKRRGIVSMFPWQVECLTSDGVLD--GRNLVY 50
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BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: UPI000673F895 (LOW QUALITY PROTEIN: DNA polymerase theta-like n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=UPI000673F895)

HSP 1 Score: 50.8 bits (120), Expect = 7.130e-5
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:  202 LSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            LS +G+PE ++D YKK+G+  +F WQA CL   N     G NLVY
Sbjct:  250 LSSWGLPEPVLDVYKKQGISTMFEWQAECLLTGNA--LGGDNLVY 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2G8KJ37_STIJA5.950e-741.43DEAD domain-containing protein n=1 Tax=Stichopus j... [more]
A0A5E4M187_9HEMI8.030e-651.11DNA-directed DNA polymerase, family A, palm domain... [more]
J9M4Q5_ACYPI2.780e-546.67Uncharacterized protein n=13 Tax=Aphidinae TaxID=1... [more]
UPI0007637EF37.120e-544.44DNA polymerase theta n=1 Tax=Diuraphis noxia TaxID... [more]
UPI000673F8957.130e-548.89LOW QUALITY PROTEIN: DNA polymerase theta-like n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9600contigH-paniculata_contig9600:5991..6906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size350
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9600.17307.1prot_H-paniculata_contig9600.17307.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9600 5991..6906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.6211407-CDS-H-paniculata_contig9600:5990..61121622931191.6211407-CDS-H-paniculata_contig9600:5990..6112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9600 5991..6112 +
1691481631.5472395-CDS-H-paniculata_contig9600:5990..61121691481631.5472395-CDS-H-paniculata_contig9600:5990..6112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9600 5991..6112 +
1622931191.6380043-CDS-H-paniculata_contig9600:6391..65201622931191.6380043-CDS-H-paniculata_contig9600:6391..6520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9600 6392..6520 +
1691481631.555905-CDS-H-paniculata_contig9600:6391..65201691481631.555905-CDS-H-paniculata_contig9600:6391..6520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9600 6392..6520 +
1622931191.6530764-CDS-H-paniculata_contig9600:6809..69061622931191.6530764-CDS-H-paniculata_contig9600:6809..6906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9600 6810..6906 +
1691481631.566352-CDS-H-paniculata_contig9600:6809..69061691481631.566352-CDS-H-paniculata_contig9600:6809..6906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9600 6810..6906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9600.17307.1

>prot_H-paniculata_contig9600.17307.1 ID=prot_H-paniculata_contig9600.17307.1|Name=mRNA_H-paniculata_contig9600.17307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
YISLKGLKLEGADAYKAFEEDKAKLRSNGGRRVMDGSTILRGSGQGSHVD
PAKDTDVEKQLESHQLKLSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVD
NCKPCAGGNLVYRYV*
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mRNA from alignment at H-paniculata_contig9600:5991..6906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9600.17307.1 ID=mRNA_H-paniculata_contig9600.17307.1|Name=mRNA_H-paniculata_contig9600.17307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=916bp|location=Sequence derived from alignment at H-paniculata_contig9600:5991..6906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATTTCATTGAAAGGACTGAAGCTTGAGGGTGCGGATGCTTACAAGGC
CTTCGAAGAAGACAAAGCGAAGCTCAGAAGCAACGGGGGACGTAGGGTTA
TGGACGGTTCAACCATCCTGAGGTGCGAGACGTAATCGCGGTGGATTTTA
GTGCTTAGAAATCTCATTCCACCCATCGGGAGATCCTGTGAATGAAGGCT
CGCTGACACAGGTGGTCTTCATTGCATAACAAACACCTGTCGCAGGGGTT
CTATCGGATGCACAAGACCGCAACCCCATGGACACAAACTGTAGATGAGG
AATCTCTTGTGTCTCATCGTGCAAACCCCGCCGATTCACGGTGGCATGGA
GTGTAACTCACAAGACCACCTATTTTATCTCGGGTGCAACTCTCGTCGTA
GAGGGAGCGGACAGGGCAGTCATGTAGACCCAGCGAAGGACACAGACGTG
GAGAAACAGTTGGAAAGCCACCAGTTGAAGCTCAGTTTTTACGGGGTGCC
GGAGCAGCTGGTTGATTCGTACAAGAAGCGGTGAGATGGTAGTTTGATGA
TATCATTGGTTGTGTGAGAGATTGTCTCTGCAGCAGGACAGCAGCTGTCC
AGGCTGTAGCACGTGTTGTGGTCTAGTCCATTGTTGGTTTGCTGTGCATG
TTATGAACTGCAGCAAGGTTGTAGTTCCCTTACATGAGTTGGTATTCCTG
GCATGTCACCAGCGCCGTCAATAATGGCGTTTTTATTAGCACAAAAAAAT
GTTGTCAAGTTATTGTAAAAGTTTTATTTCCCTCTTTGCTCTGCACGTAT
TGACTATTCTTCAAAGCAGGGGAGTTGAACAGCTGTTTCCGTGGCAAGCT
CATTGCCTGCGCGTAGACAACTGCAAGCCTTGTGCTGGAGGGAACCTTGT
GTACAGGTACGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9600:5991..6906+

>mRNA_H-paniculata_contig9600.17307.1 ID=mRNA_H-paniculata_contig9600.17307.1|Name=mRNA_H-paniculata_contig9600.17307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig9600:5991..6906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATTTCATTGAAAGGACTGAAGCTTGAGGGTGCGGATGCTTACAAGGC
CTTCGAAGAAGACAAAGCGAAGCTCAGAAGCAACGGGGGACGTAGGGTTA
TGGACGGTTCAACCATCCTGAGTATATTTCATTGAAAGGACTGAAGCTTG
AGGGTGCGGATGCTTACAAGGCCTTCGAAGAAGACAAAGCGAAGCTCAGA
AGCAACGGGGGACGTAGGGTTATGGACGGTTCAACCATCCTGAGAGGGAG
CGGACAGGGCAGTCATGTAGACCCAGCGAAGGACACAGACGTGGAGAAAC
AGTTGGAAAGCCACCAGTTGAAGCTCAGTTTTTACGGGGTGCCGGAGCAG
CTGGTTGATTCGTACAAGAAGCGAGGGAGCGGACAGGGCAGTCATGTAGA
CCCAGCGAAGGACACAGACGTGGAGAAACAGTTGGAAAGCCACCAGTTGA
AGCTCAGTTTTTACGGGGTGCCGGAGCAGCTGGTTGATTCGTACAAGAAG
CGGGGAGTTGAACAGCTGTTTCCGTGGCAAGCTCATTGCCTGCGCGTAGA
CAACTGCAAGCCTTGTGCTGGAGGGAACCTTGTGTACAGGTACGTGTGAG
GGAGTTGAACAGCTGTTTCCGTGGCAAGCTCATTGCCTGCGCGTAGACAA
CTGCAAGCCTTGTGCTGGAGGGAACCTTGTGTACAGGTACGTGTGA
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