mRNA_H-paniculata_contig9600.17307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: A0A2G8KJ37_STIJA (DEAD domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KJ37_STIJA)

HSP 1 Score: 56.6 bits (135), Expect = 5.950e-7
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1

Query:  127 SGQGSHVDPAKDTDVEKQLESHQLKLSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            +GQ S + P   +  E       L LS +G+PE +++ Y   GV+ +FPWQA CLR   CK   GGNL+Y
Sbjct:  285 NGQRSPISPPPTSTQEC------LSLSSWGLPEAVLNQYYLMGVQNMFPWQAQCLR--KCKVLQGGNLIY 346

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BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: A0A5E4M187_9HEMI (DNA-directed DNA polymerase, family A, palm domain,Helicase, C-terminal,Ribonuclease H-like n=2 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4M187_9HEMI)

HSP 1 Score: 53.5 bits (127), Expect = 8.030e-6
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1

Query:  202 LSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            L  +G+P Q+VD+YKKRG+  +FPWQ  CL  D      G NLVY
Sbjct:    8 LDSWGLPPQIVDNYKKRGIVSMFPWQVECLTCDGVLD--GQNLVY 50

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BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: J9M4Q5_ACYPI (Uncharacterized protein n=13 Tax=Aphidinae TaxID=133076 RepID=J9M4Q5_ACYPI)

HSP 1 Score: 52.0 bits (123), Expect = 2.780e-5
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 1

Query:  202 LSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            +  +G+P+Q+V++YKKRG+  +FPWQ  CL  D      G NLVY
Sbjct:    8 IDSWGLPDQIVENYKKRGIVSMFPWQVECLTSDGVLD--GRNLVY 50

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BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: UPI0007637EF3 (DNA polymerase theta n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI0007637EF3)

HSP 1 Score: 50.8 bits (120), Expect = 7.120e-5
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 1

Query:  202 LSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            +  +G+P+Q+V++YK+RG+  +FPWQ  CL  D      G NLVY
Sbjct:    8 IDSWGLPDQIVENYKRRGIVSMFPWQVECLTSDGVLD--GRNLVY 50

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BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Match: UPI000673F895 (LOW QUALITY PROTEIN: DNA polymerase theta-like n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=UPI000673F895)

HSP 1 Score: 50.8 bits (120), Expect = 7.130e-5
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1

Query:  202 LSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVDNCKPCAGGNLVY 336
            LS +G+PE ++D YKK+G+  +F WQA CL   N     G NLVY
Sbjct:  250 LSSWGLPEPVLDVYKKQGISTMFEWQAECLLTGNA--LGGDNLVY 292

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig9600.17307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A2G8KJ37_STIJA	5.950e-7	41.43	DEAD domain-containing protein n=1 Tax=Stichopus j...	[more]
A0A5E4M187_9HEMI	8.030e-6	51.11	DNA-directed DNA polymerase, family A, palm domain...	[more]
J9M4Q5_ACYPI	2.780e-5	46.67	Uncharacterized protein n=13 Tax=Aphidinae TaxID=1...	[more]
UPI0007637EF3	7.120e-5	44.44	DNA polymerase theta n=1 Tax=Diuraphis noxia TaxID...	[more]
UPI000673F895	7.130e-5	48.89	LOW QUALITY PROTEIN: DNA polymerase theta-like n=1...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig9600	contig	H-paniculata_contig9600:5991..6906 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig9600:5991..6906+
coding sequence from alignment at H-paniculata_contig9600:5991..6906+

protein sequence of mRNA_H-paniculata_contig9600.17307.1

>prot_H-paniculata_contig9600.17307.1 ID=prot_H-paniculata_contig9600.17307.1|Name=mRNA_H-paniculata_contig9600.17307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
YISLKGLKLEGADAYKAFEEDKAKLRSNGGRRVMDGSTILRGSGQGSHVD
PAKDTDVEKQLESHQLKLSFYGVPEQLVDSYKKRGVEQLFPWQAHCLRVD
NCKPCAGGNLVYRYV*

mRNA from alignment at H-paniculata_contig9600:5991..6906+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig9600.17307.1 ID=mRNA_H-paniculata_contig9600.17307.1|Name=mRNA_H-paniculata_contig9600.17307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=916bp|location=Sequence derived from alignment at H-paniculata_contig9600:5991..6906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATTTCATTGAAAGGACTGAAGCTTGAGGGTGCGGATGCTTACAAGGC
CTTCGAAGAAGACAAAGCGAAGCTCAGAAGCAACGGGGGACGTAGGGTTA
TGGACGGTTCAACCATCCTGAGGTGCGAGACGTAATCGCGGTGGATTTTA
GTGCTTAGAAATCTCATTCCACCCATCGGGAGATCCTGTGAATGAAGGCT
CGCTGACACAGGTGGTCTTCATTGCATAACAAACACCTGTCGCAGGGGTT
CTATCGGATGCACAAGACCGCAACCCCATGGACACAAACTGTAGATGAGG
AATCTCTTGTGTCTCATCGTGCAAACCCCGCCGATTCACGGTGGCATGGA
GTGTAACTCACAAGACCACCTATTTTATCTCGGGTGCAACTCTCGTCGTA
GAGGGAGCGGACAGGGCAGTCATGTAGACCCAGCGAAGGACACAGACGTG
GAGAAACAGTTGGAAAGCCACCAGTTGAAGCTCAGTTTTTACGGGGTGCC
GGAGCAGCTGGTTGATTCGTACAAGAAGCGGTGAGATGGTAGTTTGATGA
TATCATTGGTTGTGTGAGAGATTGTCTCTGCAGCAGGACAGCAGCTGTCC
AGGCTGTAGCACGTGTTGTGGTCTAGTCCATTGTTGGTTTGCTGTGCATG
TTATGAACTGCAGCAAGGTTGTAGTTCCCTTACATGAGTTGGTATTCCTG
GCATGTCACCAGCGCCGTCAATAATGGCGTTTTTATTAGCACAAAAAAAT
GTTGTCAAGTTATTGTAAAAGTTTTATTTCCCTCTTTGCTCTGCACGTAT
TGACTATTCTTCAAAGCAGGGGAGTTGAACAGCTGTTTCCGTGGCAAGCT
CATTGCCTGCGCGTAGACAACTGCAAGCCTTGTGCTGGAGGGAACCTTGT
GTACAGGTACGTGTGA

Coding sequence (CDS) from alignment at H-paniculata_contig9600:5991..6906+

>mRNA_H-paniculata_contig9600.17307.1 ID=mRNA_H-paniculata_contig9600.17307.1|Name=mRNA_H-paniculata_contig9600.17307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig9600:5991..6906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATTTCATTGAAAGGACTGAAGCTTGAGGGTGCGGATGCTTACAAGGC
CTTCGAAGAAGACAAAGCGAAGCTCAGAAGCAACGGGGGACGTAGGGTTA
TGGACGGTTCAACCATCCTGAGTATATTTCATTGAAAGGACTGAAGCTTG
AGGGTGCGGATGCTTACAAGGCCTTCGAAGAAGACAAAGCGAAGCTCAGA
AGCAACGGGGGACGTAGGGTTATGGACGGTTCAACCATCCTGAGAGGGAG
CGGACAGGGCAGTCATGTAGACCCAGCGAAGGACACAGACGTGGAGAAAC
AGTTGGAAAGCCACCAGTTGAAGCTCAGTTTTTACGGGGTGCCGGAGCAG
CTGGTTGATTCGTACAAGAAGCGAGGGAGCGGACAGGGCAGTCATGTAGA
CCCAGCGAAGGACACAGACGTGGAGAAACAGTTGGAAAGCCACCAGTTGA
AGCTCAGTTTTTACGGGGTGCCGGAGCAGCTGGTTGATTCGTACAAGAAG
CGGGGAGTTGAACAGCTGTTTCCGTGGCAAGCTCATTGCCTGCGCGTAGA
CAACTGCAAGCCTTGTGCTGGAGGGAACCTTGTGTACAGGTACGTGTGAG
GGAGTTGAACAGCTGTTTCCGTGGCAAGCTCATTGCCTGCGCGTAGACAA
CTGCAAGCCTTGTGCTGGAGGGAACCTTGTGTACAGGTACGTGTGA