Homology
BLAST of mRNA_H-paniculata_contig96.17303.1 vs. uniprot
Match: A0A6H5JNQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ3_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.620e-24 Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 2 Query: 62 MSSQNRSKMGKTFFKMTCSCPQQILGYGSCLQAKAAAG-LERGACEEEFSALKRCFQKAAKGVKASR 259
MSSQNRSKMG+ F KMT +CPQQI GYG+CLQA + AG LERG C+E+F ALKRCFQ+AAKG+KA+R
Sbjct: 1 MSSQNRSKMGQAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFKALKRCFQQAAKGLKATR 67
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-27_006000.1 |
| Exons | 3 |
| Model size | 801 |
| Cds size | 201 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig96.17303.1 >prot_H-paniculata_contig96.17303.1 ID=prot_H-paniculata_contig96.17303.1|Name=mRNA_H-paniculata_contig96.17303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MSSQNRSKMGKTFFKMTCSCPQQILGYGSCLQAKAAAGLERGACEEEFSA
LKRCFQKAAKGVKASR* back to topmRNA from alignment at H-paniculata_contig96:44985..46842+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig96.17303.1 ID=mRNA_H-paniculata_contig96.17303.1|Name=mRNA_H-paniculata_contig96.17303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1858bp|location=Sequence derived from alignment at H-paniculata_contig96:44985..46842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAACCGCGATCACCATAGCCCAGACCTCAACGGACTCTGTCGATCCGCA
TCTGACACATAATGTCATCCCAAAACAGGTCCAAGATGGGAAAGACCTTC
TTCAAAATGACTTGCTCTTGTCCACAGCAAGTGAGTCTGTTGTGGACGGC
TGGCTGCCTGTGGGGGATTCAAAATCTGTAGAACAGTACGGTCAGTAGCG
GTGATACTGCCTGCGTCAGTAGCGGTGATACTGCCTGCGTCGAGGTTAAT
GTCAGAAGGCGTTGCTATGTCCTGAGCACACTAGTGACCCATCGACACTA
TCATACAGCAGTGTAGCAGTTCAATTCATGTGTCGATGACTGACTGAGCA
GAGGCCGCTACAGGGCCTGATGAATATGCCTATTGCACATGAAAAGGTCC
CTCACAGCGGAGTATAGTGTGCGTGTATCCGGAATTGGGAATTGGGAGTT
GTGAATATCGCTATATGGTGCTGTGAAGCCTGTCTGTACCCGCGATACGA
ATGAAGGCAGAACTGAAAGGACTACCGTCAGTGACGTGGTAAATACAATA
CATGTTTCCGGTGTAAGTTGAAGCTTATGAGAACTCTACACCGCGTGCTC
CTTGTTCCATGCTTCTGTATTGCAGCAACTGCGGGCGATAGTATTCTTCA
AAAAATACAAAGTAGATATTGTATTTTTTTATTTTTTTTTACCCCCGGAA
GGCTGAGGTAAAAACCTTTTCCGCTGCTTCAGATACTGTATTGTCTAACG
TCACACTCACCGTGAGGTTTGTAGCAGTCCACATCGCCAAAATACAACAG
TAGAAAAGAGTACGTGTAAATTACTGCACTAGTAGTTTCTCTGCCATATA
CGTGTCCGGTGTACTGTGTGTCGCTATCAGATCCTGGGATACGGAAGCTG
CTTGCAGGCTAAAGCGGCCGCAGGATTGGAAAGGGGAGCCTGCGAAGAAG
AATTCAGCGCTCTCAAGCGGTGTTTCCAAAAAGCGGTATGATGTACAGAT
CTTAAACCAGGCGATAATTATTGCCCTTCGTAGGCATTCCGTGTATTGCC
ACTCCTGTGAATTAGCTCTTGCGCTGGGAGACATGAATTTCATTTCGCGC
TGACCTCTCTACATGTCGACATTGTGCCGTCTGGAGACGATATAGAGTGT
GAAGGTCCTCTTGATGTGGGTCCGATATATGCTACTTCCGGTATTTATTA
ATAGTGTTTTGTTTTGACCTTATCTATTACCCCGTGCTCCCGCCTTCCGT
GAAACCCTTTCCGCGGGTCTTTCCGCAAATACGTCACCGCAGGCCAAAGG
AGTTAAGGCTTCTCGATGACAGCAAAAGTAACGCTAAAGGGCGCTCACAG
CAGATTGCGTTGTGGAACTCCATATGATTCAAGAGAGTGGTCGCTCACGC
CAAATTCGCAAAAGCATGCTACGAAGGGGAAGAGAAGAGAGCTACTGTGG
AGACGGCAAAAGCCACCGCTAATTGACTTGGTGAACCTGTGACCAACGAC
AGCTCTGTTCTTATAGTCCCTAGCGCAGTCGCTAAGCAGCAGGTGTGCCG
GGTCAAAACCAACAAAACTGTCATAAAATTGTGGCCATAAAATTTGCCCA
TGTGGTTGACGGCCGGCCATGTGTTGTTTCTTGTGTCTACCAAATATATG
CAGCGAAACTATCAAGAGAAAATATCCAATCGCCACCGTGTCAAAACAGA
ATCCCGCAGCTGTAACACATTCGAAAATGGAAAGCGTGATGTAAATGCAA
TTGAATTATACTCAAGAATGGATATCCGGTGGCAACGCAGGAAGCGGCGA
CTAATCGTACTGAGCACAGGAAGACTACGCCTTCTTTAATCGCTACTGTA
CACTGAGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig96:44985..46842+ >mRNA_H-paniculata_contig96.17303.1 ID=mRNA_H-paniculata_contig96.17303.1|Name=mRNA_H-paniculata_contig96.17303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig96:44985..46842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCCCAAAACAGGTCCAAGATGGGAAAGACCTTCTTCAAAATGAC
TTGCTCTTGTCCACAGCAAATGTCATCCCAAAACAGGTCCAAGATGGGAA
AGACCTTCTTCAAAATGACTTGCTCTTGTCCACAGCAAATCCTGGGATAC
GGAAGCTGCTTGCAGGCTAAAGCGGCCGCAGGATTGGAAAGGGGAGCCTG
CGAAGAAGAATTCAGCGCTCTCAAGCGGTGTTTCCAAAAAGCGATCCTGG
GATACGGAAGCTGCTTGCAGGCTAAAGCGGCCGCAGGATTGGAAAGGGGA
GCCTGCGAAGAAGAATTCAGCGCTCTCAAGCGGTGTTTCCAAAAAGCGGC
CAAAGGAGTTAAGGCTTCTCGATGAGCCAAAGGAGTTAAGGCTTCTCGAT
GA back to top
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