mRNA_H-paniculata_contig96.17303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig96.17303.1
Unique NamemRNA_H-paniculata_contig96.17303.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig96.17303.1 vs. uniprot
Match: A0A6H5JNQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.620e-24
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 2 
Query:   62 MSSQNRSKMGKTFFKMTCSCPQQILGYGSCLQAKAAAG-LERGACEEEFSALKRCFQKAAKGVKASR 259
            MSSQNRSKMG+ F KMT +CPQQI GYG+CLQA + AG LERG C+E+F ALKRCFQ+AAKG+KA+R
Sbjct:    1 MSSQNRSKMGQAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFKALKRCFQQAAKGLKATR 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig96.17303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNQ3_9PHAE1.620e-2473.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig96contigH-paniculata_contig96:44985..46842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_006000.1
Exons3
Model size801
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig96.17303.1prot_H-paniculata_contig96.17303.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig96 45046..46303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.177568-UTR-H-paniculata_contig96:44984..450451622931191.177568-UTR-H-paniculata_contig96:44984..45045Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig96 44985..45045 +
1691481631.413312-UTR-H-paniculata_contig96:44984..450451691481631.413312-UTR-H-paniculata_contig96:44984..45045Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig96 44985..45045 +
1622931191.254237-UTR-H-paniculata_contig96:46303..468421622931191.254237-UTR-H-paniculata_contig96:46303..46842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig96 46304..46842 +
1691481631.4486618-UTR-H-paniculata_contig96:46303..468421691481631.4486618-UTR-H-paniculata_contig96:46303..46842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig96 46304..46842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.2005804-CDS-H-paniculata_contig96:45045..451141622931191.2005804-CDS-H-paniculata_contig96:45045..45114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 45046..45114 +
1691481631.4225633-CDS-H-paniculata_contig96:45045..451141691481631.4225633-CDS-H-paniculata_contig96:45045..45114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 45046..45114 +
1622931191.2208474-CDS-H-paniculata_contig96:45864..459691622931191.2208474-CDS-H-paniculata_contig96:45864..45969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 45865..45969 +
1691481631.430768-CDS-H-paniculata_contig96:45864..459691691481631.430768-CDS-H-paniculata_contig96:45864..45969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 45865..45969 +
1622931191.2366073-CDS-H-paniculata_contig96:46276..463031622931191.2366073-CDS-H-paniculata_contig96:46276..46303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 46277..46303 +
1691481631.439369-CDS-H-paniculata_contig96:46276..463031691481631.439369-CDS-H-paniculata_contig96:46276..46303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig96 46277..46303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig96.17303.1

>prot_H-paniculata_contig96.17303.1 ID=prot_H-paniculata_contig96.17303.1|Name=mRNA_H-paniculata_contig96.17303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MSSQNRSKMGKTFFKMTCSCPQQILGYGSCLQAKAAAGLERGACEEEFSA
LKRCFQKAAKGVKASR*
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mRNA from alignment at H-paniculata_contig96:44985..46842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig96.17303.1 ID=mRNA_H-paniculata_contig96.17303.1|Name=mRNA_H-paniculata_contig96.17303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1858bp|location=Sequence derived from alignment at H-paniculata_contig96:44985..46842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAACCGCGATCACCATAGCCCAGACCTCAACGGACTCTGTCGATCCGCA
TCTGACACATAATGTCATCCCAAAACAGGTCCAAGATGGGAAAGACCTTC
TTCAAAATGACTTGCTCTTGTCCACAGCAAGTGAGTCTGTTGTGGACGGC
TGGCTGCCTGTGGGGGATTCAAAATCTGTAGAACAGTACGGTCAGTAGCG
GTGATACTGCCTGCGTCAGTAGCGGTGATACTGCCTGCGTCGAGGTTAAT
GTCAGAAGGCGTTGCTATGTCCTGAGCACACTAGTGACCCATCGACACTA
TCATACAGCAGTGTAGCAGTTCAATTCATGTGTCGATGACTGACTGAGCA
GAGGCCGCTACAGGGCCTGATGAATATGCCTATTGCACATGAAAAGGTCC
CTCACAGCGGAGTATAGTGTGCGTGTATCCGGAATTGGGAATTGGGAGTT
GTGAATATCGCTATATGGTGCTGTGAAGCCTGTCTGTACCCGCGATACGA
ATGAAGGCAGAACTGAAAGGACTACCGTCAGTGACGTGGTAAATACAATA
CATGTTTCCGGTGTAAGTTGAAGCTTATGAGAACTCTACACCGCGTGCTC
CTTGTTCCATGCTTCTGTATTGCAGCAACTGCGGGCGATAGTATTCTTCA
AAAAATACAAAGTAGATATTGTATTTTTTTATTTTTTTTTACCCCCGGAA
GGCTGAGGTAAAAACCTTTTCCGCTGCTTCAGATACTGTATTGTCTAACG
TCACACTCACCGTGAGGTTTGTAGCAGTCCACATCGCCAAAATACAACAG
TAGAAAAGAGTACGTGTAAATTACTGCACTAGTAGTTTCTCTGCCATATA
CGTGTCCGGTGTACTGTGTGTCGCTATCAGATCCTGGGATACGGAAGCTG
CTTGCAGGCTAAAGCGGCCGCAGGATTGGAAAGGGGAGCCTGCGAAGAAG
AATTCAGCGCTCTCAAGCGGTGTTTCCAAAAAGCGGTATGATGTACAGAT
CTTAAACCAGGCGATAATTATTGCCCTTCGTAGGCATTCCGTGTATTGCC
ACTCCTGTGAATTAGCTCTTGCGCTGGGAGACATGAATTTCATTTCGCGC
TGACCTCTCTACATGTCGACATTGTGCCGTCTGGAGACGATATAGAGTGT
GAAGGTCCTCTTGATGTGGGTCCGATATATGCTACTTCCGGTATTTATTA
ATAGTGTTTTGTTTTGACCTTATCTATTACCCCGTGCTCCCGCCTTCCGT
GAAACCCTTTCCGCGGGTCTTTCCGCAAATACGTCACCGCAGGCCAAAGG
AGTTAAGGCTTCTCGATGACAGCAAAAGTAACGCTAAAGGGCGCTCACAG
CAGATTGCGTTGTGGAACTCCATATGATTCAAGAGAGTGGTCGCTCACGC
CAAATTCGCAAAAGCATGCTACGAAGGGGAAGAGAAGAGAGCTACTGTGG
AGACGGCAAAAGCCACCGCTAATTGACTTGGTGAACCTGTGACCAACGAC
AGCTCTGTTCTTATAGTCCCTAGCGCAGTCGCTAAGCAGCAGGTGTGCCG
GGTCAAAACCAACAAAACTGTCATAAAATTGTGGCCATAAAATTTGCCCA
TGTGGTTGACGGCCGGCCATGTGTTGTTTCTTGTGTCTACCAAATATATG
CAGCGAAACTATCAAGAGAAAATATCCAATCGCCACCGTGTCAAAACAGA
ATCCCGCAGCTGTAACACATTCGAAAATGGAAAGCGTGATGTAAATGCAA
TTGAATTATACTCAAGAATGGATATCCGGTGGCAACGCAGGAAGCGGCGA
CTAATCGTACTGAGCACAGGAAGACTACGCCTTCTTTAATCGCTACTGTA
CACTGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig96:44985..46842+

>mRNA_H-paniculata_contig96.17303.1 ID=mRNA_H-paniculata_contig96.17303.1|Name=mRNA_H-paniculata_contig96.17303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig96:44985..46842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCCCAAAACAGGTCCAAGATGGGAAAGACCTTCTTCAAAATGAC
TTGCTCTTGTCCACAGCAAATGTCATCCCAAAACAGGTCCAAGATGGGAA
AGACCTTCTTCAAAATGACTTGCTCTTGTCCACAGCAAATCCTGGGATAC
GGAAGCTGCTTGCAGGCTAAAGCGGCCGCAGGATTGGAAAGGGGAGCCTG
CGAAGAAGAATTCAGCGCTCTCAAGCGGTGTTTCCAAAAAGCGATCCTGG
GATACGGAAGCTGCTTGCAGGCTAAAGCGGCCGCAGGATTGGAAAGGGGA
GCCTGCGAAGAAGAATTCAGCGCTCTCAAGCGGTGTTTCCAAAAAGCGGC
CAAAGGAGTTAAGGCTTCTCGATGAGCCAAAGGAGTTAAGGCTTCTCGAT
GA
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