prot_H-paniculata_contig9566.17279.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig9566.17279.1
Unique Name	prot_H-paniculata_contig9566.17279.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	155

Homology

[Close]

BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot
Match: D8LQC7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC7_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 3.470e-48
Identity = 76/129 (58.91%), Postives = 101/129 (78.29%), Query Frame = 0

Query:    1 MECLQYSRAVRVLAVLSAVVLIYGASAFNLRPLILMLWGPIAGYVASTFKLRATYAFLFFYSLRVSWDMGWLISGGENWIVVWVFLFTDAASLGLVCLYARVLRMCTSADLQRLRGPQTLWRSGFFPLN 129
            M C +YSR VRVLA+L A++++ GASAF   PLILM+WGPIAGY+AS F+LRA + FLF+Y LR+SWD+GW++SGG  W+VVWVFLFTD A+ GLV  +  +L  C++A+++ LR P T W S FFPL+
Sbjct:   92 MACHRYSRVVRVLAILDAIIVLCGASAFT--PLILMIWGPIAGYLASNFRLRAAFTFLFYYGLRISWDIGWILSGGIKWVVVWVFLFTDVAASGLVYFFVVLLCRCSTAEVEHLRDPNTAWASAFFPLS 218

[Close]

BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot
Match: A0A6H5KAV0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAV0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.460e-7
Identity = 39/129 (30.23%), Postives = 71/129 (55.04%), Query Frame = 0

Query:    1 MECLQYSRAVRVLAVLSAVVLIYGASAFNLRPLILMLWGPIAGYVAST-FKLRATYAFLFFYSLRVSWDMGWLISGGENWIVVWVFLFTDAASLGL---VCLYARVLRMCTSADLQRLRGPQTLWRSGF 125
            ME    ++ +R LAV   ++L+     F +  L+L+LWGP++G++A T +    TYA+  +Y LR+S  + ++  G       W F+F  A SL +   +  +A+VL   + A++++LR P  +W   +
Sbjct:  101 MEASSLAKTIRWLAVFDGLILVINCGYFPML-LLLLLWGPLSGWMAGTRYSTAWTYAYCCYYLLRLSTYLSYVFEG-----YFW-FIFLFALSLYIARVIWRFAKVLDTLSPAEIEQLRNPTAVWSGQY 222

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LQC7_ECTSI	3.470e-48	58.91	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5KAV0_9PHAE	5.460e-7	30.23	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 37..60
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..30
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 80..103
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 61..79
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 104..154
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 31..36
None	No IPR available	TMHMM	TMhelix		coord: 13..35
None	No IPR available	TMHMM	TMhelix		coord: 81..103

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig9566	contig	H-paniculata_contig9566:1627..5377 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig9566.17279.1	mRNA_H-paniculata_contig9566.17279.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig9566 1601..6189 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig9566.17279.1 ID=prot_H-paniculata_contig9566.17279.1|Name=mRNA_H-paniculata_contig9566.17279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MECLQYSRAVRVLAVLSAVVLIYGASAFNLRPLILMLWGPIAGYVASTFK
LRATYAFLFFYSLRVSWDMGWLISGGENWIVVWVFLFTDAASLGLVCLYA
RVLRMCTSADLQRLRGPQTLWRSGFFPLNTPLARGPLAQGRARSIPTSDD
AAVL*