Homology
BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot
Match:
D8LQC7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC7_ECTSI)
HSP 1 Score: 169 bits (428), Expect = 1.220e-46
Identity = 78/133 (58.65%), Postives = 103/133 (77.44%), Query Frame = 3
Query: 15 DERLMECLQYSRAVRVLAVLSAVVLIYGASAFNLRPLILMLWGPIAGYVASTFKLRATYAFLFFYSLRVSWDMGWLISGGENWIVVWVFLFTDAASLGLVCLYARVLRMCTSADLQRLRGPQTLWRSGFFPLN 413
E LM C +YSR VRVLA+L A++++ GASAF PLILM+WGPIAGY+AS F+LRA + FLF+Y LR+SWD+GW++SGG W+VVWVFLFTD A+ GLV + +L C++A+++ LR P T W S FFPL+
Sbjct: 88 SESLMACHRYSRVVRVLAILDAIIVLCGASAFT--PLILMIWGPIAGYLASNFRLRAAFTFLFYYGLRISWDIGWILSGGIKWVVVWVFLFTDVAASGLVYFFVVLLCRCSTAEVEHLRDPNTAWASAFFPLS 218
BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot
Match:
A0A6H5KAV0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAV0_9PHAE)
HSP 1 Score: 65.1 bits (157), Expect = 2.280e-8
Identity = 41/134 (30.60%), Postives = 75/134 (55.97%), Query Frame = 3
Query: 12 HDERLMECLQYSRAVRVLAVLSAVVLIYGASAFNLRPLILMLWGPIAGYVAST-FKLRATYAFLFFYSLRVSWDMGWLISGGENWIVVWVFLFTDAASLGL---VCLYARVLRMCTSADLQRLRGPQTLWRSGF 401
H+ +LME ++ +R LAV ++L+ F + L+L+LWGP++G++A T + TYA+ +Y LR+S + ++ G W F+F A SL + + +A+VL + A++++LR P +W +
Sbjct: 96 HEAKLMEASSLAKTIRWLAVFDGLILVINCGYFPML-LLLLLWGPLSGWMAGTRYSTAWTYAYCCYYLLRLSTYLSYVFEG-----YFW-FIFLFALSLYIARVIWRFAKVLDTLSPAEIEQLRNPTAVWSGQY 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9566.17279.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.22e-46 / Id = 58.65 Expect = 2.28e-8 / Id = 30.60 Sequence D8LQC7_ECTSI A0A6H5KAV0_9PHAE
Match Name E-value Identity Description
D8LQC7_ECTSI 1.220e-46 58.65 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more] A0A6H5KAV0_9PHAE 2.280e-8 30.60 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-10_005140.1 Exons 4 Model size 1257 Cds size 465 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9566.17279.1
>prot_H-paniculata_contig9566.17279.1 ID=prot_H-paniculata_contig9566.17279.1|Name=mRNA_H-paniculata_contig9566.17279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MECLQYSRAVRVLAVLSAVVLIYGASAFNLRPLILMLWGPIAGYVASTFK back to top mRNA from alignment at H-paniculata_contig9566:1601..6189+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9566.17279.1 ID=mRNA_H-paniculata_contig9566.17279.1|Name=mRNA_H-paniculata_contig9566.17279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4589bp|location=Sequence derived from alignment at H-paniculata_contig9566:1601..6189+ (Halopteris paniculata Hal_grac_a_UBK monoicous)CAGGACTTCAGCACGACGAGCGACTG ATGGAATGTCTTCAGTATTCGCGG
GCAGTTCGGGTGTTGGCCGTGCTGAGCGCCGTAGTGTTAATCTACGGCGC
TTCTGCGTTCAA GTGAGAATTTTATTGTACGATGGCGGCGACGGCGGCGG
CGGGGGGGGGGGACTGGTCACGCAGGAGTATCTATTTTTCTGCTGATGTA
TCAATTGCGCCGCTCAGTAGGGGCAAGTATCTCTCTATTGCTGCCGTACA
GAAGCTTTGATCGTTTAACGATCGAAGGGGTGAGGTGAGGGGGGTAGTGG
TAGTAATAATGTGTTTGGGTCCTTCCTAGCAGGCGCATTTTTAGGCAGAA
AAACGGAAATTTGTCAATCTAAAATCACCTCTTCAAAGAAGAGCCAAAAT
TTTCCCAGCAGAACTACTATCAAACCATTGGTTTCATCGAATATTTCTAC
AAACATGGAAGAAGAAACGAGAACATTTCAGCTCTTCTTATTTGAGAGCC
CGAAAACCTAACAATTGACAAATTTCCGTTTTCCGCAAAAAAATGCGACT
GTTGGGAATGATCCTTAGACCTGAGTTTCCCCCCCAACCAAGGTACATCA
ATAAGCGCAAAACCCAATAGAGGCACCGCACCGGGGTACGAAGGCGTTTC
AAACGCGATTATCTCGACAATTACGCTCATTAGCTATAATAGCTGGTGAC
AACGAATAGTATGCCGTCGTAGAGATCCTGCGGAGATTTTTGTCGATTGA
CGGGTTCCCGGCGACCACGTAAGGTCTATTTCCGTCCTCGAGATAGGTAC
GTTTGACTGAAAAACGTTCGCACCCCGGTGCGAGATACCTCCCCGTTTTC
CTTATCCAGTACCATTGTAGGATAACACTTTATCCCTCGGACAAACATGA
ATACTTGGCGTAGTCTCCACAAAAATAAGATAGTATTCGCCTGATTTTCA
GAATGAGCTCATGTATTCTATGTGCCCTGGACGATTCACGACTGTTAATA
ATACTCGTATGTCGAATGGACAGAGGTGGGTACTTTATTCTATGTGTCCG
CTGATTCTGAAACTCAGGCGAATACTTGTTATTTTTCTTGGCGAATACGC
CAAGTATTCGTATTTGTCCGGGGGGTGTTATTACTTTGTGAAGCATTTAT
ATCAGATAATGAGGCCCGATGCGACTTAATACAGGGAGTGCTCGTTTAAG
CGGAATCCCTGTGGTGTGTCCTGTAGAGCACGCCTAACATTTAGCTCTTT
TTCCAGTGACTTTTTTACTATCTTTGATCGTTGAAAGAGTGTGGTGGTTG
ATCATTGATTGCTAATGTCCACTTGAAAGGTTGTGGTCTTATGGAACATA
CTTGTAGCGGTCTAGAAGGAACGTGGATGATTTTCAAAGTCCCCTCGGCA
CAACGATGATAGCATTACCCCCTCGGATTACCCCCTCGGATTTTCGGGCT
TAGTGCAAATGATCTGTGTTTCATGTGTGTCCTCCCAAAGTAGACCAGTA
CGAATACGTGGCGTATTCGCCACGAGAATTTCAAGAAGTATTCGCCTATG
CTTCAGAATGAACGGATACACGAAAAAATAAAGTTTCCAGCCCTGTCCAT
TCGATTTCTCAAGTATTTTTAGCAGTCGTGGATGATCCGCGGCACATAGC
ATACACGAGCTTATTATGAACAGTTGGATGAAATTTTGAATTTCCGTGGC
GAATATGCCAAGTATTCGTATTCGTCTGAGGGGAGGAAATATATATATAT
ATATATATTTATATAAATGGAACGGAAAAAAGGCCCCAAGCGAAATACGT
GATTCCTGCACAAACGATGATAGCGAGTTGCTCTGAGCGGAGAGCGGTTT
CGAGGGGAGGAGAAACTCTTGGCGTTCGCAGCTCACAACATAATTATTAT
ATTATAAAGAATGGTGGAGAAAAAATCAGGCTCGCTTGAATCGCTTCCCT
CAATAAATTTGATTTGAGGAATGGTGCTGATGTTGACTCCCCGTTGGATT
TTTCGCCTAGTCAATTCTAGATACTCGCTCGTATTTCGAGTGGGGCTACA
TGTAAGTAAGCCGAGAGGCTCACGCCAAATAGATGGGAATTTCTTGAGTG
TTATCGTGTACTGATTCCTCCTTTTTAAGAGAGGGAACCTCATTATCGCA
CAACTTCGCGAATTATTTATGCCATAATTCCCGTGGAACGTCAGAGTTCA
TCCTTTCTCTTATGGCTGACCGACTCTCTTCGTGTACACACGCACGTCAC
GCCCTGCGCATCATGTTATCGGCCTGTTAACAAGTAATGGTTATGATTCA
GCTAAAATTTAGGGTTAACTCGCTGCTTTCTTGTGCATGTATCTATGGTT
TGATGCCGCAGCCTCAGGCCGTTGATCCTAATGCTGTGGGGACCCATCGC
GGGTTACGTTGCTTCGACCTTCAAACTACGCGCTACCTATGCATTTCTCT
TTTTCTACAGCCTTAGAGTATCGTGGGACATGGGGTGGCTAATCAGCGGG
GGGGAAAACTG GTGAGGAGTAGAACGAAACATGTATCACGGGACGTCTTG
TTTTTCTCTGCGGTTGGTTTGGCGCATTGTAGATGTTCCACACGATGAGC
AAAGCGAGAAATTGGACTTGCGTGAGAGGGAATTGTATTCACGTTGAATG
TGAATATGAGCATGAATTGTCACACGGTTCGTTGTGAACTGTCATGATTC
AGCCTGAACGTTGCATCCGTGGAACACACACCAGGTGTAGGTTCTCCCAG
TGCAGTTGGGTTGGCCGTTCTGCCGACGCAATTGGGTCATATGTATGCCC
TGCCAACGCACAGTAGAGCATGATGGGTTGGAGTTAGGGTCAGGGTTTGG
TTTATTTGTAAATTGCATCAAGTGGACGTCCATGAATGTCCATGTGTTTT
GCCCCAAATTCAGTCTGAGAATGTAATTTGGATATTCCAGTTGATAAAGA
GGCACAACCAATGTTCTCGTGGATATCCATGTATTAAGCATTCGACGTTA
ATATTCGATACGAAGTTGGGCATTCAGAGACAGCATCAAAATTCGCATGG
GGCCTCCAAAGTTCGGTATGCACATTCAACATTCACATCATCACTGGATA
TGCAAATTAATGTTGAACGTTCAATGTAAATATTGATCATGTTCATATTG
ATCATGTTCATATTGAACATTTCATAGGGACGTAAAATTCGAGATGAGCG
TTCAACGTGCCACATGAAAGTTCGGTATTTCGTATACAGCCACCCCTTTC
TGGTAATATAGCTTTCATAACAAATGCTCATTACCGATTGGTATGTTGTC
GTAGTATTCCTGCCAACCGTACAAGATAATTGTGTGAATGATCGTTCGTA
TTATCCGTGCAATGTTTTGCGAGCGGCAAGGGGTGTTGCGCCCGCGAACA
TCCTGCTTAACAAAACGCTAAATGCCTTCAAAATACCACTTCGTTCTGTC
TTGCCAGACACGCATGAATATATGCCCCTGCCCCAATGCCGCCCGTTCCC
CCTCCTCCCCCGTCCTTGTTCTTGATTGCGTCCACACCATGACTGTAGGA
TCGTGGTATGGGTGTTCCTTTTCACGGATGCTGCTTCGTTGGGTCTCGTT
TGTTTGTACGCAAGGGTCCTGCGAATGTGCACGTCTGCCGATTTGCAGCG
ACTTCGGGGCCCCCAAACGTTATGGAGGTCAGGATTTTTCCCTTTAAACA
CGCCGCTGGCACGGGGACCGTTGGCACAGGGAAGGGCAAGGTCAATACCC
ACTTCCGACGACGCGGCTGTGCTGTAA AGAGTTTTTTTTCGTGTTCATAA
TGACCATGTTCGCGTGGTTTTCTTTTTGTGTTGCTGTCGGTGTTGTTGGA
GGTTGGTTGCTCTCCAGCCTTCCCTTGCATCGGGTTCTATAGCTGTTGTA
TGTGCAGTAAGTGTCCGTCGTGTGTGTTGGAATCATGATCCTGAGCCCGC
TGAGGTCGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGT GTATGTATGTG
TGTGTGTGTGTATGTGCCACGTATGGATATTACAGGTCCTGTGAAATCAT
TTCGTGTCTTCTGTCTGCCTGTACTGTTTAGGTACAACTGATTGGTTGCT
TTCGTTGCATTTCTGGTTGTTGTACATAACACAGTTCAGTTCCTGGTCCG
TTTGACTACCTACAAGGTGTTGCTGTTCTCGGGCAGATTCTTTATCAGCG
CAATATTTGCAGTCCTGCATGTTTTTGTTGCCGTTCACCTTTTGGTGACT
GTTGCGAGTATTGCACAGGTCTGGGGCAGAGCACCCTCGTGCATAAATTC
ATTTGCGTTGCCTGTTCTTGGTACTGGTAGCTGCGTGGGGAAATAGAGTT
TGGCTGTCTCTTTCGCTGCCTATGGGTGTGTAAGACCGCTATGTACTGGT
TCTGGTGAGTATCTATCTGCGTCTCATCTACTGTATGCTGAAACAGAGGT
TAAGGTGGACCCGCAATTGCTGAAATATGTACTGATTTCAACAGGTAGAT
CGGGTATGCACGTTGTTCTCACGTGTATCTCAAGGATCAACTTTTGAAGT
CTGATTTATGAGGATATATGTTCGCTTAGCCGATTGCCA back to top Coding sequence (CDS) from alignment at H-paniculata_contig9566:1601..6189+
>mRNA_H-paniculata_contig9566.17279.1 ID=mRNA_H-paniculata_contig9566.17279.1|Name=mRNA_H-paniculata_contig9566.17279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig9566:1601..6189+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top