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Homology
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A536ZC28_9PROT (Isocitrate dehydrogenase (NADP(+)) (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZC28_9PROT) HSP 1 Score: 61.2 bits (147), Expect = 1.020e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 6 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 38
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A7C7ZQL3_9GAMM (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=Candidatus Thioglobus sp. TaxID=2026721 RepID=A0A7C7ZQL3_9GAMM) HSP 1 Score: 59.3 bits (142), Expect = 6.960e-10 Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRP+EYSVIATLNLNGDY+SDALAA V G
Sbjct: 15 QQILLRPEEYSVIATLNLNGDYVSDALAAQVGG 47
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A2G6LIM3_9GAMM (Isocitrate dehydrogenase [NADP] n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6LIM3_9GAMM) HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 288 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 320
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A1G0X5H9_9GAMM (Isocitrate dehydrogenase [NADP] n=1 Tax=Legionellales bacterium RIFCSPHIGHO2_12_FULL_35_11 TaxID=1798567 RepID=A0A1G0X5H9_9GAMM) HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 289 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 321
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A2E1NXF8_9GAMM (Isocitrate dehydrogenase [NADP] n=3 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2E1NXF8_9GAMM) HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 288 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 320
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A536ZL74_9PROT (Isocitrate dehydrogenase [NADP] n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZL74_9PROT) HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 290 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 322
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: E8PMC4_THESS (Isocitrate dehydrogenase [NADP] n=48 Tax=Thermaceae TaxID=188786 RepID=E8PMC4_THESS) HSP 1 Score: 61.2 bits (147), Expect = 8.890e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 290 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 322
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A2Z5V352_9COXI (Isocitrate dehydrogenase [NADP] n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2Z5V352_9COXI) HSP 1 Score: 61.2 bits (147), Expect = 8.900e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 289 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 321
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: F3KH02_9GAMM (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=gamma proteobacterium IMCC2047 TaxID=434085 RepID=F3KH02_9GAMM) HSP 1 Score: 59.7 bits (143), Expect = 9.460e-10 Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGD+ISDALAA V G
Sbjct: 54 QQILLRPDEYSVIATLNLNGDFISDALAAQVGG 86
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A5E6NU25_9GAMM (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=uncultured Gammaproteobacteria bacterium TaxID=86473 RepID=A0A5E6NU25_9GAMM) HSP 1 Score: 59.7 bits (143), Expect = 9.890e-10 Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRP+EYSVIATLNLNGDYISDALAA V G
Sbjct: 138 QQILLRPEEYSVIATLNLNGDYISDALAAQVGG 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 62.0 |
| Seed ortholog evalue | 8e-08 |
| Seed eggNOG ortholog | 1111069.TCCBUS3UF1_16390 |
| Preferred name | icd |
| KEGG rclass | RC00001,RC00084,RC00114,RC00626,RC02801 |
| KEGG ko | ko:K00031 |
| KEGG Reaction | R00267,R00268,R01899 |
| KEGG Pathway | ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146 |
| KEGG Module | M00009,M00010,M00173,M00740 |
| Hectar predicted targeting category | no signal peptide or anchor |
| GOs | GO:0003674,GO:0003824,GO:0003862,GO:0004448,GO:0004450,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006551,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0022900,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 |
| EggNOG free text desc. | TIGRFAM isocitrate dehydrogenase, NADP-dependent, prokaryotic type |
| EggNOG OGs | 1WIQQ@1297,COG0538@1,COG0538@2 |
| EC | 1.1.1.42 |
| COG Functional cat. | C |
| BiGG Reaction | e_coli_core.b1136,iAF1260.b1136,iECDH1ME8569_1439.ECDH1ME8569_1071,iEcDH1_1363.EcDH1_2511,iJN746.PP_4011,iJO1366.b1136,iJR904.b1136,iY75_1357.Y75_RS05930,iYL1228.KPN_01144 |
| Best tax level | Deinococcus-Thermus |
| Best eggNOG OG | NA|NA|NA |
| BRITE | br01601,ko00000,ko00001,ko00002,ko01000 |
| Exons | 1 |
| Model size | 132 |
| Cds size | 132 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9554.17273.1 >prot_H-paniculata_contig9554.17273.1 ID=prot_H-paniculata_contig9554.17273.1|Name=mRNA_H-paniculata_contig9554.17273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
VTQQILLRPDEYSVIATLNLNGDYISDALAAGVEGGGGIFFFF* back to topmRNA from alignment at H-paniculata_contig9554:40..171- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig9554.17273.1 ID=mRNA_H-paniculata_contig9554.17273.1|Name=mRNA_H-paniculata_contig9554.17273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig9554:40..171- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACACAACAGATTCTGTTGCGCCCTGACGAGTACTCAGTGATTGCAAC
ATTGAACTTGAATGGCGACTATATTTCCGACGCACTGGCTGCTGGGGTGG
AGGGGGGGGGGGGCATTTTTTTTTTTTTTTAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig9554:40..171- >mRNA_H-paniculata_contig9554.17273.1 ID=mRNA_H-paniculata_contig9554.17273.1|Name=mRNA_H-paniculata_contig9554.17273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig9554:40..171- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACACAACAGATTCTGTTGCGCCCTGACGAGTACTCAGTGATTGCAAC
ATTGAACTTGAATGGCGACTATATTTCCGACGCACTGGCTGCTGGGGTGG
AGGGGGGGGGGGGCATTTTTTTTTTTTTTTAAGTTACACAACAGATTCTG
TTGCGCCCTGACGAGTACTCAGTGATTGCAACATTGAACTTGAATGGCGA
CTATATTTCCGACGCACTGGCTGCTGGGGTGGAGGGGGGGGGGGGCATTT
TTTTTTTTTTTTAA back to top
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