mRNA_H-paniculata_contig9554.17273.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9554.17273.1
Unique NamemRNA_H-paniculata_contig9554.17273.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A536ZC28_9PROT (Isocitrate dehydrogenase (NADP(+)) (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZC28_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct:    6 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 38
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BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A7C7ZQL3_9GAMM (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=Candidatus Thioglobus sp. TaxID=2026721 RepID=A0A7C7ZQL3_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 6.960e-10
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRP+EYSVIATLNLNGDY+SDALAA V G
Sbjct:   15 QQILLRPEEYSVIATLNLNGDYVSDALAAQVGG 47
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BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A2G6LIM3_9GAMM (Isocitrate dehydrogenase [NADP] n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6LIM3_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct:  288 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 320
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BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A1G0X5H9_9GAMM (Isocitrate dehydrogenase [NADP] n=1 Tax=Legionellales bacterium RIFCSPHIGHO2_12_FULL_35_11 TaxID=1798567 RepID=A0A1G0X5H9_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct:  289 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 321
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BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A2E1NXF8_9GAMM (Isocitrate dehydrogenase [NADP] n=3 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2E1NXF8_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct:  288 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 320
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BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A536ZL74_9PROT (Isocitrate dehydrogenase [NADP] n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZL74_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct:  290 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 322
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BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: E8PMC4_THESS (Isocitrate dehydrogenase [NADP] n=48 Tax=Thermaceae TaxID=188786 RepID=E8PMC4_THESS)

HSP 1 Score: 61.2 bits (147), Expect = 8.890e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct:  290 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 322
[Close]
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A2Z5V352_9COXI (Isocitrate dehydrogenase [NADP] n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2Z5V352_9COXI)

HSP 1 Score: 61.2 bits (147), Expect = 8.900e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct:  289 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 321
[Close]
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: F3KH02_9GAMM (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=gamma proteobacterium IMCC2047 TaxID=434085 RepID=F3KH02_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 9.460e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRPDEYSVIATLNLNGD+ISDALAA V G
Sbjct:   54 QQILLRPDEYSVIATLNLNGDFISDALAAQVGG 86
[Close]
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A5E6NU25_9GAMM (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=uncultured Gammaproteobacteria bacterium TaxID=86473 RepID=A0A5E6NU25_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 9.890e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
            QQILLRP+EYSVIATLNLNGDYISDALAA V G
Sbjct:  138 QQILLRPEEYSVIATLNLNGDYISDALAAQVGG 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A536ZC28_9PROT1.020e-1093.94Isocitrate dehydrogenase (NADP(+)) (Fragment) n=1 ... [more]
A0A7C7ZQL3_9GAMM6.960e-1087.88Isocitrate dehydrogenase (NADP(+)) n=1 Tax=Candida... [more]
A0A2G6LIM3_9GAMM8.880e-1093.94Isocitrate dehydrogenase [NADP] n=1 Tax=Gammaprote... [more]
A0A1G0X5H9_9GAMM8.880e-1093.94Isocitrate dehydrogenase [NADP] n=1 Tax=Legionella... [more]
A0A2E1NXF8_9GAMM8.880e-1093.94Isocitrate dehydrogenase [NADP] n=3 Tax=Cellvibrio... [more]
A0A536ZL74_9PROT8.880e-1093.94Isocitrate dehydrogenase [NADP] n=2 Tax=Betaproteo... [more]
E8PMC4_THESS8.890e-1093.94Isocitrate dehydrogenase [NADP] n=48 Tax=Thermacea... [more]
A0A2Z5V352_9COXI8.900e-1093.94Isocitrate dehydrogenase [NADP] n=3 Tax=Proteobact... [more]
F3KH02_9GAMM9.460e-1090.91Isocitrate dehydrogenase (NADP(+)) n=1 Tax=gamma p... [more]
A0A5E6NU25_9GAMM9.890e-1090.91Isocitrate dehydrogenase (NADP(+)) n=1 Tax=uncultu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9554contigH-paniculata_contig9554:40..171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.0
Seed ortholog evalue8e-08
Seed eggNOG ortholog1111069.TCCBUS3UF1_16390
Preferred nameicd
KEGG rclassRC00001,RC00084,RC00114,RC00626,RC02801
KEGG koko:K00031
KEGG ReactionR00267,R00268,R01899
KEGG Pathwayko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146
KEGG ModuleM00009,M00010,M00173,M00740
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003862,GO:0004448,GO:0004450,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006551,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0022900,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.TIGRFAM isocitrate dehydrogenase, NADP-dependent, prokaryotic type
EggNOG OGs1WIQQ@1297,COG0538@1,COG0538@2
EC1.1.1.42
COG Functional cat.C
BiGG Reactione_coli_core.b1136,iAF1260.b1136,iECDH1ME8569_1439.ECDH1ME8569_1071,iEcDH1_1363.EcDH1_2511,iJN746.PP_4011,iJO1366.b1136,iJR904.b1136,iY75_1357.Y75_RS05930,iYL1228.KPN_01144
Best tax levelDeinococcus-Thermus
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.1693006-CDS-H-paniculata_contig9554:39..1711622931186.1693006-CDS-H-paniculata_contig9554:39..171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9554 40..171 -
1691481629.4359465-CDS-H-paniculata_contig9554:39..1711691481629.4359465-CDS-H-paniculata_contig9554:39..171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9554 40..171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9554.17273.1prot_H-paniculata_contig9554.17273.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9554 40..171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9554.17273.1

>prot_H-paniculata_contig9554.17273.1 ID=prot_H-paniculata_contig9554.17273.1|Name=mRNA_H-paniculata_contig9554.17273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
VTQQILLRPDEYSVIATLNLNGDYISDALAAGVEGGGGIFFFF*
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mRNA from alignment at H-paniculata_contig9554:40..171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9554.17273.1 ID=mRNA_H-paniculata_contig9554.17273.1|Name=mRNA_H-paniculata_contig9554.17273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig9554:40..171- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACACAACAGATTCTGTTGCGCCCTGACGAGTACTCAGTGATTGCAAC
ATTGAACTTGAATGGCGACTATATTTCCGACGCACTGGCTGCTGGGGTGG
AGGGGGGGGGGGGCATTTTTTTTTTTTTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9554:40..171-

>mRNA_H-paniculata_contig9554.17273.1 ID=mRNA_H-paniculata_contig9554.17273.1|Name=mRNA_H-paniculata_contig9554.17273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig9554:40..171- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACACAACAGATTCTGTTGCGCCCTGACGAGTACTCAGTGATTGCAAC
ATTGAACTTGAATGGCGACTATATTTCCGACGCACTGGCTGCTGGGGTGG
AGGGGGGGGGGGGCATTTTTTTTTTTTTTTAAGTTACACAACAGATTCTG
TTGCGCCCTGACGAGTACTCAGTGATTGCAACATTGAACTTGAATGGCGA
CTATATTTCCGACGCACTGGCTGCTGGGGTGGAGGGGGGGGGGGGCATTT
TTTTTTTTTTTTAA
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