mRNA_H-paniculata_contig9526.17252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig9526.17252.1
Unique Name	mRNA_H-paniculata_contig9526.17252.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.830e-34
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 1

Query:    1 QAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAM--LLSSEAGVTKAESTAVAQAA-----GEDLAIKYLEFCVNEL 276
            +APFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRR+AAM  L +S         TA   A+     GEDLAIKYLEFCVN+L
Sbjct:  857 KAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRKAAMVRLSASPPAAVSVSPTAEGNASLAVGEGEDLAIKYLEFCVNDL 955

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BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: D8LI29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI29_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.720e-33
Identity = 73/102 (71.57%), Postives = 78/102 (76.47%), Query Frame = 1

Query:    1 QAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAM--LLSSEAGVTKAESTAVAQA--------AGEDLAIKYLEFCVNEL 276
            +APFDKVEPLVYKYSASLMAADPAGTI TWMSKPQLKPTKLIPALVRYSQRR+AAM  L +S         TA A+          GEDLAIKYLEFCVN+L
Sbjct:  467 KAPFDKVEPLVYKYSASLMAADPAGTIGTWMSKPQLKPTKLIPALVRYSQRRKAAMERLSASPPAAVSVSPTAAAEGNASLAAAGEGEDLAIKYLEFCVNDL 568

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BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: A0A836CAW5_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.380e-16
Identity = 49/92 (53.26%), Postives = 58/92 (63.04%), Query Frame = 1

Query:    1 QAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAMLLSSEAGVTKAESTAVAQAAGEDLAIKYLEFCVNEL 276
            +AP +KVE LVY+YSA LM AD AGT+  WM KP L+ TKL+PALVRYS+ R AA           AE  A     G D A+ YLE+CVN L
Sbjct:  713 RAPLEKVEGLVYRYSAVLMDADAAGTVSMWMGKPGLRATKLMPALVRYSRHRAAA-----------AEPRA-----GPDWAVTYLEYCVNTL 788

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BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: A0A7S2BML3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BML3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.660e-9
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1

Query:    4 APFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAM 168
            APF++V  L YK+S++ M   P  T+  W +KP L PTKLIPA VRY+  R  AM
Sbjct:   98 APFEQVSGLFYKFSSAFMETVPERTVHVWKTKPDLSPTKLIPAFVRYNHLRATAM 152

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BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: A0A4D8ZSD8_SALSN (Pep3_Vps18 domain-containing protein n=6 Tax=Salvia TaxID=21880 RepID=A0A4D8ZSD8_SALSN)

HSP 1 Score: 52.0 bits (123), Expect = 1.180e-5
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 1

Query:   28 LVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAMLLSSEAGVTKAESTAVAQAAGEDLAIKYLEFCVNEL 276
            L YK++  L+  D   T+E+WM+K  L P KLIPA++RYS    A   L+     T                IKYLE+CV+ L
Sbjct:  562 LQYKFAPDLIMLDAYETVESWMTKKDLNPRKLIPAMMRYSSEPHAKNSLTGNWNETHE-------------VIKYLEYCVHRL 631

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KQH0_9PHAE	4.830e-34	74.75	Pep3_Vps18 domain-containing protein n=1 Tax=Ectoc...	[more]
D8LI29_ECTSI	5.720e-33	71.57	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836CAW5_9STRA	2.380e-16	53.26	Pep3_Vps18 domain-containing protein n=1 Tax=Tribo...	[more]
A0A7S2BML3_9STRA	6.660e-9	50.91	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A4D8ZSD8_SALSN	1.180e-5	37.35	Pep3_Vps18 domain-containing protein n=6 Tax=Salvi...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig9526	contig	H-paniculata_contig9526:858..1643 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	131.7
Seed ortholog evalue	1.7e-28
Seed eggNOG ortholog	2880.D8LI29
Preferred name	VPS18
KEGG ko	ko:K20181
KEGG Pathway	ko04138,map04138
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000149,GO:0000323,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005856,GO:0005884,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006728,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006914,GO:0006928,GO:0006950,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007568,GO:0007610,GO:0007632,GO:0007634,GO:0008055,GO:0008057,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009790,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010876,GO:0012505,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015721,GO:0015833,GO:0015849,GO:0015850,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0018130,GO:0019058,GO:0019438,GO:0019538,GO:0019748,GO:0019889,GO:0019905,GO:0019953,GO:0021700,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030260,GO:0030674,GO:0030707,GO:0030855,GO:0030897,GO:0030903,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033060,GO:0033263,GO:0033365,GO:0033554,GO:0034613,GO:0034641,GO:0035542,GO:0040011,GO:0042440,GO:0042441,GO:0042558,GO:0042559,GO:0042594,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045022,GO:0045176,GO:0045184,GO:0045202,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046718,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046942,GO:0048066,GO:0048069,GO:0048072,GO:0048278,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051674,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0060034,GO:0060035,GO:0060036,GO:0060090,GO:0060429,GO:0060627,GO:0061356,GO:0061357,GO:0061462,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090087,GO:0090130,GO:0090132,GO:0097352,GO:0097708,GO:0098657,GO:0098796,GO:0098927,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.	notochord cell vacuolation
EggNOG OGs	KOG2034@1,KOG2034@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko04131
Exons	2
Model size	278
Cds size	276
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931182.977821-CDS-H-paniculata_contig9526:857..946	1622931182.977821-CDS-H-paniculata_contig9526:857..946	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9526 858..946 +
1691481628.0499012-CDS-H-paniculata_contig9526:857..946	1691481628.0499012-CDS-H-paniculata_contig9526:857..946	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9526 858..946 +
1622931182.9960022-CDS-H-paniculata_contig9526:1454..1641	1622931182.9960022-CDS-H-paniculata_contig9526:1454..1641	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9526 1455..1641 +
1691481628.0716596-CDS-H-paniculata_contig9526:1454..1641	1691481628.0716596-CDS-H-paniculata_contig9526:1454..1641	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9526 1455..1641 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig9526.17252.1	prot_H-paniculata_contig9526.17252.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig9526 858..1641 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig9526:858..1643+
coding sequence from alignment at H-paniculata_contig9526:858..1643+

protein sequence of mRNA_H-paniculata_contig9526.17252.1

>prot_H-paniculata_contig9526.17252.1 ID=prot_H-paniculata_contig9526.17252.1|Name=mRNA_H-paniculata_contig9526.17252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
QAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQ
RRRAAMLLSSEAGVTKAESTAVAQAAGEDLAIKYLEFCVNEL

mRNA from alignment at H-paniculata_contig9526:858..1643+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig9526.17252.1 ID=mRNA_H-paniculata_contig9526.17252.1|Name=mRNA_H-paniculata_contig9526.17252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=786bp|location=Sequence derived from alignment at H-paniculata_contig9526:858..1643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGCCGTTCGACAAGGTGGAGCCTTTGGTTTACAAGTACAGCGCGTC
GCTCATGGCTGCTGATCCTGCGGGGACTATAGAGACCTGGTATGGTATGG
TGTGTGCCGTGGTATGTTTTTGTTTACCTGAAGATGCGTGATTGACAACG
CGCGCGTTTGCGCGGGGTATTTCTGTGTAGTAAAAAATGCCACACACCAA
CATTATTTTCTTCGTTTTTGTGTCTTTGGTGTACATGGTAGAGCACGGTC
TCATGAAAAATGGGAAAGGACGGGATCCCGTCCCGTCAACCTCCACTCCG
CGTCTCGTCCTGTCACTATCTTAAGCGTCCCGATCTCTTCCCGTGGTCTC
GTGACAACCCCTGGAAAATAGTATGGAGGCACATGTGCGCCACGCACAAA
CGTTTCTATACATGTATTATGACATTCGCGTGTCACATAAACATTGGGTT
CTTGGCGTCAACGCGCTCGCGAAAAGAAACGAGCATACACAATCGCGTGC
TGATTGCAAAGTGCACATGACCATCCCCCTCTTACGTCTACCCCCCCTCC
CTCCCGCCCCCTCACGCTGCATGTATTTTTCGTTGGCTTCTGGACAGGAT
GTCAAAACCGCAGCTGAAGCCTACCAAGCTTATCCCAGCGCTGGTGCGCT
ACAGCCAGCGCCGGAGAGCAGCGATGTTGCTATCGTCAGAGGCGGGGGTT
ACGAAGGCAGAATCGACTGCGGTTGCTCAGGCGGCCGGGGAGGACCTCGC
CATCAAGTACCTGGAGTTCTGCGTCAATGAGCTCAA

Coding sequence (CDS) from alignment at H-paniculata_contig9526:858..1643+

>mRNA_H-paniculata_contig9526.17252.1 ID=mRNA_H-paniculata_contig9526.17252.1|Name=mRNA_H-paniculata_contig9526.17252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig9526:858..1643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGCCGTTCGACAAGGTGGAGCCTTTGGTTTACAAGTACAGCGCGTC
GCTCATGGCTGCTGATCCTGCGGGGACTATAGAGACCTGCAGGCGCCGTT
CGACAAGGTGGAGCCTTTGGTTTACAAGTACAGCGCGTCGCTCATGGCTG
CTGATCCTGCGGGGACTATAGAGACCTGGATGTCAAAACCGCAGCTGAAG
CCTACCAAGCTTATCCCAGCGCTGGTGCGCTACAGCCAGCGCCGGAGAGC
AGCGATGTTGCTATCGTCAGAGGCGGGGGTTACGAAGGCAGAATCGACTG
CGGTTGCTCAGGCGGCCGGGGAGGACCTCGCCATCAAGTACCTGGAGTTC
TGCGTCAATGAGCTCGATGTCAAAACCGCAGCTGAAGCCTACCAAGCTTA
TCCCAGCGCTGGTGCGCTACAGCCAGCGCCGGAGAGCAGCGATGTTGCTA
TCGTCAGAGGCGGGGGTTACGAAGGCAGAATCGACTGCGGTTGCTCAGGC
GGCCGGGGAGGACCTCGCCATCAAGTACCTGGAGTTCTGCGTCAATGAGC
TC