mRNA_H-paniculata_contig952.17249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig952.17249.1
Unique NamemRNA_H-paniculata_contig952.17249.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig952.17249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig952contigH-paniculata_contig952:3071..3415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931182.5817559-CDS-H-paniculata_contig952:3070..34151622931182.5817559-CDS-H-paniculata_contig952:3070..3415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig952 3071..3415 +
1691481627.8696122-CDS-H-paniculata_contig952:3070..34151691481627.8696122-CDS-H-paniculata_contig952:3070..3415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig952 3071..3415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig952.17249.1prot_H-paniculata_contig952.17249.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig952 3071..3415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig952.17249.1

>prot_H-paniculata_contig952.17249.1 ID=prot_H-paniculata_contig952.17249.1|Name=mRNA_H-paniculata_contig952.17249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
DRRGPSDAEPQRVRNTQKAWITLITTCKDMALKITESPSVGSWRKLQKHY
CTNDLKEKSHLLRELIPLRMEPGEESTKFLSRVDRIANDLERLGRTVDED
ERNLVIVNELSREYE
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mRNA from alignment at H-paniculata_contig952:3071..3415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig952.17249.1 ID=mRNA_H-paniculata_contig952.17249.1|Name=mRNA_H-paniculata_contig952.17249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig952:3071..3415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCGCAGGGGACCCTCGGATGCAGAGCCCCAGAGGGTGCGGAACACGCA
GAAGGCGTGGATCACACTAATCACCACCTGCAAAGACATGGCGCTGAAGA
TCACCGAGTCGCCGAGTGTGGGGTCGTGGAGGAAGCTCCAAAAGCACTAC
TGCACCAACGATCTTAAAGAGAAGTCACATCTGCTGCGCGAATTGATCCC
CCTAAGGATGGAGCCCGGGGAAGAATCCACAAAATTCCTTTCGCGGGTAG
ACCGTATCGCCAATGACTTGGAGCGGCTTGGGAGGACAGTCGACGAGGAT
GAGAGGAACCTGGTGATAGTGAACGAGCTGTCACGAGAGTATGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig952:3071..3415+

>mRNA_H-paniculata_contig952.17249.1 ID=mRNA_H-paniculata_contig952.17249.1|Name=mRNA_H-paniculata_contig952.17249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig952:3071..3415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCGCAGGGGACCCTCGGATGCAGAGCCCCAGAGGGTGCGGAACACGCA
GAAGGCGTGGATCACACTAATCACCACCTGCAAAGACATGGCGCTGAAGA
TCACCGAGTCGCCGAGTGTGGGGTCGTGGAGGAAGCTCCAAAAGCACTAC
TGCACCAACGATCTTAAAGAGAAGTCACATCTGCTGCGCGAATTGATCCC
CCTAAGGATGGAGCCCGGGGAAGAATCCACAAAATTCCTTTCGCGGGTAG
ACCGTATCGCCAATGACTTGGAGCGGCTTGGGAGGACAGTCGACGAGGAT
GAGAGGAACCTGGTGATAGTGAACGAGCTGTCACGAGAGTATGAGGATCG
CAGGGGACCCTCGGATGCAGAGCCCCAGAGGGTGCGGAACACGCAGAAGG
CGTGGATCACACTAATCACCACCTGCAAAGACATGGCGCTGAAGATCACC
GAGTCGCCGAGTGTGGGGTCGTGGAGGAAGCTCCAAAAGCACTACTGCAC
CAACGATCTTAAAGAGAAGTCACATCTGCTGCGCGAATTGATCCCCCTAA
GGATGGAGCCCGGGGAAGAATCCACAAAATTCCTTTCGCGGGTAGACCGT
ATCGCCAATGACTTGGAGCGGCTTGGGAGGACAGTCGACGAGGATGAGAG
GAACCTGGTGATAGTGAACGAGCTGTCACGAGAGTATGAG
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