mRNA_H-paniculata_contig95.17236.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig95.17236.1
Unique NamemRNA_H-paniculata_contig95.17236.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5KKV8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.340e-14
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   13 CNPDKEVSNRAVGGLLQRLA-------------------RIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            C+   E+SNRAVGGLLQRL                    RIRLFLV+MD+AKRAEDAG+AV+VYMDESFVH
Sbjct:   85 CSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYMDESFVH 155
[Close]
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.710e-14
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   13 CNPDKEVSNRAVGGLLQRLA-------------------RIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            C+   E+SNRAVGGLLQRL                    RIRLFLV+MD+AKRAEDAG+AV+VYMDESFVH
Sbjct:  206 CSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGIAVIVYMDESFVH 276
[Close]
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5KF48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF48_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.700e-14
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   13 CNPDKEVSNRAVGGLLQRLA-------------------RIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            C+   E+SNRAVGGLLQRL                    RIRLFLV+MD+AKRAEDAG+AV+VYMDESFVH
Sbjct:   85 CSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYMDESFVH 155
[Close]
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-13
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   13 CNPDKEVSNRAVGGLLQRLA-------------------RIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            C+   E+SNRAVGGLLQRL                    RIRLFLV+MD+AKRAEDAG+AV+VY+DESFVH
Sbjct:   85 CSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYIDESFVH 155
[Close]
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.270e-13
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   13 CNPDKEVSNRAVGGLLQRLA-------------------RIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            C+   E+SNRAVGGLLQRL                    RIRLFLV+MD+AK AEDAG+AV+VYMDESFVH
Sbjct:  129 CSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKGAEDAGVAVIVYMDESFVH 199
[Close]
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5K8G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.800e-12
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   13 CNPDKEVSNRAVGGLLQRLA-------------------RIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            C+   E+SNRAVGGLLQRL                    RIRLFLV+M +AKR EDAG+AV+VY+DESFVH
Sbjct:  206 CSCGLEMSNRAVGGLLQRLGFERCRGRIKIPPLNEERKNRIRLFLVKMLLAKRPEDAGVAVIVYIDESFVH 276
[Close]
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5K658_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K658_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.960e-12
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   31 VSNRAVGGLLQRLA-------------------RIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            +SNRAVGG+LQRL                    RI  FLV+MD+AKRAEDAG+AV+VYMDESFVH
Sbjct:    1 MSNRAVGGMLQRLGSKRRRGRINIPPLIEERKNRIPFFLVKMDLAKRAEDAGIAVIVYMDESFVH 65
[Close]
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5JWX3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX3_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.450e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:   61 QRLARIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            +RLARIR FLVEMD+AKRAEDAGLAV+VYMDESFVH
Sbjct:  105 ERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVH 140
[Close]
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5KF49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF49_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.900e-11
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   64 RLARIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            RLARIR FLVEMDIAKRAEDAGLAV+VYMDESFVH
Sbjct:  248 RLARIRRFLVEMDIAKRAEDAGLAVIVYMDESFVH 282
[Close]
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.580e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:   61 QRLARIRLFLVEMDIAKRAEDAGLAVLVYMDESFVH 168
            +RLARIR FLVEMD+AKRAEDAGLAV+VYMDESFVH
Sbjct:  215 ERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVH 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig95.17236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKV8_9PHAE2.340e-1459.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX2_9PHAE2.710e-1459.15Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF48_9PHAE3.700e-1459.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE1.280e-1357.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP14_9PHAE3.270e-1357.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8G5_9PHAE6.800e-1254.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K658_9PHAE7.960e-1256.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWX3_9PHAE1.450e-1188.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KF49_9PHAE1.900e-1194.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAU4_9PHAE2.580e-1188.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig95contigH-paniculata_contig95:32971..33179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.2371054-CDS-H-paniculata_contig95:32970..330731622931181.2371054-CDS-H-paniculata_contig95:32970..33073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig95 32971..33073 -
1691481627.1380668-CDS-H-paniculata_contig95:32970..330731691481627.1380668-CDS-H-paniculata_contig95:32970..33073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig95 32971..33073 -
1622931181.2534213-CDS-H-paniculata_contig95:33114..331791622931181.2534213-CDS-H-paniculata_contig95:33114..33179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig95 33115..33179 -
1691481627.1494775-CDS-H-paniculata_contig95:33114..331791691481627.1494775-CDS-H-paniculata_contig95:33114..33179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig95 33115..33179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig95.17236.1prot_H-paniculata_contig95.17236.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig95 32971..33179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig95.17236.1

>prot_H-paniculata_contig95.17236.1 ID=prot_H-paniculata_contig95.17236.1|Name=mRNA_H-paniculata_contig95.17236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MIEHCNPDKEVSNRAVGGLLQRLARIRLFLVEMDIAKRAEDAGLAVLVYM
DESFVH
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mRNA from alignment at H-paniculata_contig95:32971..33179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig95.17236.1 ID=mRNA_H-paniculata_contig95.17236.1|Name=mRNA_H-paniculata_contig95.17236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=209bp|location=Sequence derived from alignment at H-paniculata_contig95:32971..33179- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGAGCACTGCAACCCAGACAAGGAGGTGTCAAACCGCGCGGTAGG
AGGGTTGCTGCAGAGGCTCGATTATAGGCGCCGTAGGGGCAGTTGGATGC
GAAGAGGCTCGCGCGTATTCGTCTATTTCTCGTTGAAATGGACATTGCGA
AAAGGGCAGAGGATGCGGGGCTGGCAGTTCTTGTGTACATGGATGAGAGT
TTTGTCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig95:32971..33179-

>mRNA_H-paniculata_contig95.17236.1 ID=mRNA_H-paniculata_contig95.17236.1|Name=mRNA_H-paniculata_contig95.17236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig95:32971..33179- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGAGCACTGCAACCCAGACAAGGAGGTGTCAAACCGCGCGGTAGG
AGGGTTGCTGCAGAGATGATTGAGCACTGCAACCCAGACAAGGAGGTGTC
AAACCGCGCGGTAGGAGGGTTGCTGCAGAGGCTCGCGCGTATTCGTCTAT
TTCTCGTTGAAATGGACATTGCGAAAAGGGCAGAGGATGCGGGGCTGGCA
GTTCTTGTGTACATGGATGAGAGTTTTGTCCACGCTCGCGCGTATTCGTC
TATTTCTCGTTGAAATGGACATTGCGAAAAGGGCAGAGGATGCGGGGCTG
GCAGTTCTTGTGTACATGGATGAGAGTTTTGTCCAC
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