prot_H-paniculata_contig9490.17228.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9490.17228.1
Unique Nameprot_H-paniculata_contig9490.17228.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length458
Homology
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BLAST of mRNA_H-paniculata_contig9490.17228.1 vs. uniprot
Match: D8LID6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID6_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 2.850e-87
Identity = 194/424 (45.75%), Postives = 258/424 (60.85%), Query Frame = 0 
Query:   40 DRRDNRPPRLRTLLSLCINQIGKDFLAYRSDEENMAETFRLLPDTCLSRLSRAASAVATVCDDNVALLCSPSVNALWLRGSFSDQGADAVLPVLRNSGEDQDDKRTRSHGDVTSASARHTTHQDGKRTALADTRNKGCPSSTDHTVGVANGSRSDHPEQQVEVPVADSDCGFSPLEGDGGGEGERDEDWETADERIQVSLRGGVSLTTLDISSPFVSADFVKKLVLRIPTLQRLGLRGSLGVVGGPEAVCHYVPRLAALRELDVSCCSWFCDICLRRFAITLGQIHSTTVRHQADTCQSGITLERMT-LEYVDET-TSAWGAASTSTFEPLAPSTHNI-LGGEDGA--SIVHAPTGTGFSVGNGNADGPASGVEQVTRFRTFTLVCARTAVTDQGARVAEALAPGLLVVL-EERSAVAGLHLAM 457
            D  + RP +  TLLSLCI QIG+DFLAYR+D++ +AE F LLP  CLSRLSR+ASA   V D N+ LLCSP V+ LWLRG F+D+G  A+LP L N+G        R +G   +A      ++DG  TA          ++      VA+G   D     ++     +  G + +EG        +E+WETA +RI+ SLRGGVSLT+LD+SSP V+A FVK+L  RIP+L+RLGLRGS GVVGGP+ VC +VPRLAALRELD+S C+WFCD+ LRR A +L    S       D    G      T L+ +DE  T  WGAA        APST+N+   G  G+  S   A   +G S  +G  + P+ G   + RFRTFT+VCARTAVT++GA+ AE ++PGL+V+L  ++ A AG  L++
Sbjct:   76 DWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDAIAEAFLLLPSPCLSRLSRSASAGGNVADHNIGLLCSPGVSTLWLRGRFTDEGVGALLPAL-NAG-------NRPNGGSHAAELAEV-YRDG--TAADCLAGNAVDTAMGTESRVASGD--DGLVALIQPAAYHAAAGEAIVEG-------AEEEWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSFGVVGGPDFVCDHVPRLAALRELDLSHCTWFCDLTLRRLAKSLSLRASPAA---GDPENQGPHAGSATYLQDLDEAETRGWGAA-------FAPSTNNLAFAGHAGSGPSGSDADLVSGASRESGEKELPSLG-RSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVILVADKPAAAGGALSL 468
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9490.17228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LID6_ECTSI2.850e-8745.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 221..366
e-value: 1.0E-5
score: 26.6
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 239..314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9490contigH-paniculata_contig9490:3766..8973 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9490.17228.1mRNA_H-paniculata_contig9490.17228.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9490 2976..8984 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9490.17228.1 ID=prot_H-paniculata_contig9490.17228.1|Name=mRNA_H-paniculata_contig9490.17228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=458bp
MQSVNRAGLAPVEERAAGLVAGSASSAARISRCGEGVHLDRRDNRPPRLR
TLLSLCINQIGKDFLAYRSDEENMAETFRLLPDTCLSRLSRAASAVATVC
DDNVALLCSPSVNALWLRGSFSDQGADAVLPVLRNSGEDQDDKRTRSHGD
VTSASARHTTHQDGKRTALADTRNKGCPSSTDHTVGVANGSRSDHPEQQV
EVPVADSDCGFSPLEGDGGGEGERDEDWETADERIQVSLRGGVSLTTLDI
SSPFVSADFVKKLVLRIPTLQRLGLRGSLGVVGGPEAVCHYVPRLAALRE
LDVSCCSWFCDICLRRFAITLGQIHSTTVRHQADTCQSGITLERMTLEYV
DETTSAWGAASTSTFEPLAPSTHNILGGEDGASIVHAPTGTGFSVGNGNA
DGPASGVEQVTRFRTFTLVCARTAVTDQGARVAEALAPGLLVVLEERSAV
AGLHLAM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf