mRNA_H-paniculata_contig9490.17228.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9490.17228.1 vs. uniprot
Match: D8LID6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID6_ECTSI) HSP 1 Score: 285 bits (728), Expect = 1.230e-84 Identity = 194/424 (45.75%), Postives = 258/424 (60.85%), Query Frame = 3 Query: 129 DRRDNRPPRLRTLLSLCINQIGKDFLAYRSDEENMAETFRLLPDTCLSRLSRAASAVATVCDDNVALLCSPSVNALWLRGSFSDQGADAVLPVLRNSGEDQDDKRTRSHGDVTSASARHTTHQDGKRTALADTRNKGCPSSTDHTVGVANGSRSDHPEQQVEVPVADSDCGFSPLEGDGGGEGERDEDWETADERIQVSLRGGVSLTTLDISSPFVSADFVKKLVLRIPTLQRLGLRGSLGVVGGPEAVCHYVPRLAALRELDVSCCSWFCDICLRRFAITLGQIHSTTVRHQADTCQSGITLERMT-LEYVDET-TSAWGAASTSTFEPLAPSTHNI-LGGEDGA--SIVHAPTGTGFSVGNGNADGPASGVEQVTRFRTFTLVCARTAVTDQGARVAEALAPGLLVVL-EERSAVAGLHLAM 1382
D + RP + TLLSLCI QIG+DFLAYR+D++ +AE F LLP CLSRLSR+ASA V D N+ LLCSP V+ LWLRG F+D+G A+LP L N+G R +G +A ++DG TA ++ VA+G D ++ + G + +EG +E+WETA +RI+ SLRGGVSLT+LD+SSP V+A FVK+L RIP+L+RLGLRGS GVVGGP+ VC +VPRLAALRELD+S C+WFCD+ LRR A +L S D G T L+ +DE T WGAA APST+N+ G G+ S A +G S +G + P+ G + RFRTFT+VCARTAVT++GA+ AE ++PGL+V+L ++ A AG L++
Sbjct: 76 DWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDAIAEAFLLLPSPCLSRLSRSASAGGNVADHNIGLLCSPGVSTLWLRGRFTDEGVGALLPAL-NAG-------NRPNGGSHAAELAEV-YRDG--TAADCLAGNAVDTAMGTESRVASGD--DGLVALIQPAAYHAAAGEAIVEG-------AEEEWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSFGVVGGPDFVCDHVPRLAALRELDLSHCTWFCDLTLRRLAKSLSLRASPAA---GDPENQGPHAGSATYLQDLDEAETRGWGAA-------FAPSTNNLAFAGHAGSGPSGSDADLVSGASRESGEKELPSLG-RSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVILVADKPAAAGGALSL 468 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9490.17228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9490.17228.1 >prot_H-paniculata_contig9490.17228.1 ID=prot_H-paniculata_contig9490.17228.1|Name=mRNA_H-paniculata_contig9490.17228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=458bp MQSVNRAGLAPVEERAAGLVAGSASSAARISRCGEGVHLDRRDNRPPRLRback to top mRNA from alignment at H-paniculata_contig9490:2976..8984- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9490.17228.1 ID=mRNA_H-paniculata_contig9490.17228.1|Name=mRNA_H-paniculata_contig9490.17228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6009bp|location=Sequence derived from alignment at H-paniculata_contig9490:2976..8984- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9490:2976..8984- >mRNA_H-paniculata_contig9490.17228.1 ID=mRNA_H-paniculata_contig9490.17228.1|Name=mRNA_H-paniculata_contig9490.17228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2748bp|location=Sequence derived from alignment at H-paniculata_contig9490:2976..8984- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |