mRNA_H-paniculata_contig12732.1721.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: D8LR76_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR76_ECTSI) HSP 1 Score: 138 bits (347), Expect = 2.940e-36 Identity = 65/96 (67.71%), Postives = 79/96 (82.29%), Query Frame = 1
Query: 1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIEASDMASR 288
+YRTVKD+RFPLSVRNE AAM++LL L LD YPT+LE+D+ LKNGGLEPFSNRRHALIQV GEKVVL HY+D A+T LAC A++ +++ SR
Sbjct: 422 MYRTVKDVRFPLSVRNEVAAMERLLLLTTGALDAYPTTLEEDRAALKNGGLEPFSNRRHALIQVYGEKVVLAHYVDLAETALACLAAVDTTELVSR 517
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A6V1NVS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVS5_HETAK) HSP 1 Score: 99.0 bits (245), Expect = 3.360e-22 Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVLA 249
+YRT KDIRFP +RNE+AA++ + +E L YP + EDD+ L++G L+PFSN+RHA+IQV GEK +L HYLD +T LA
Sbjct: 326 IYRTAKDIRFPFGLRNEKAALEVFAGICEEYLSKYPATYEDDKALLESGSLKPFSNQRHAVIQVMGEKKILLHYLDLCRTALA 408
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S2FMX3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FMX3_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.110e-19 Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 10 TVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVL 246
TVKDIRFP+S+RNE+AA+ + ++ + L YP SLE+D+V L L PFSN RHA+IQV+GEK VL HY Q L
Sbjct: 162 TVKDIRFPMSLRNEKAALTMFVGMINDKLAAYPRSLEEDKVLLAGDSLTPFSNERHAVIQVAGEKEVLEHYKTHCQVAL 240
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S1BNT8_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNT8_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.530e-18 Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVL 246
++RT KDIRFPLS+RNERAA++ LL++V+ + Y TSL++D TL++ FSN R+A++QV GEK VL+HY +FA T +
Sbjct: 409 MFRTAKDIRFPLSLRNERAALEHLLQIVRCAMSEYTTSLKEDIRTLESNQFPMFSNERNAIVQVKGEKEVLQHYENFAVTAI 490
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S2P8K8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P8K8_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.530e-18 Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEP-FSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIEASD 276
+YRT KD+RF +S++NERAA+Q L +V++ L YPT+L++D V L++ L P FSN RHA IQV GEK VL HY A+ L T IE D
Sbjct: 423 MYRTCKDVRFAISIKNERAALQLLSHVVEKALAQYPTTLDEDNVMLRSPDLLPAFSNARHATIQVRGEKEVLHHYKKLAEMAL---TVIELDD 512
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A1E7FP55_9STRA (Ribulose-1,5-bisphosphate carboxylase-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FP55_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.030e-17 Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 4 YRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGL-EPFSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIE 267
YR+ +DIR PLS+RNER AM LL+++ L YPT+L D+V L + GL PFSN RHA IQV GEK VL H+ +A+T L IE
Sbjct: 438 YRSCRDIRHPLSLRNERMAMMNLLQIISIALAQYPTALSIDKVDLSDEGLYPPFSNVRHAKIQVRGEKEVLHHFARWARTALEVLDVIE 526
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S1XR30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR30_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.530e-17 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 4 YRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVL 246
YRT+K++ P+S+ NER AM+ L ++ +P +LE+D L++G L PFSN RHALIQV GEKVVLR + DF T +
Sbjct: 354 YRTIKNVSRPISIENERKAMELFLNMLTAIERAFPRTLEEDAEALRHGNLAPFSNERHALIQVKGEKVVLRFFQDFTSTCI 434
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S2ER73_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ER73_TRICV) HSP 1 Score: 83.6 bits (205), Expect = 1.230e-16 Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 4 YRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEP-FSNRRHALIQVSGEKVVLRHYLDFAQTVL 246
YRT +DIR PL +RNERAAM+ L+ V L +YPT+L D + L++ P FSN+RHA IQV GEK VL HY +A+T L
Sbjct: 522 YRTCRDIRHPLGLRNERAAMEHLMETVGRALAMYPTTLTQDVIDLEDEMSYPRFSNKRHAKIQVRGEKEVLHHYAQWARTSL 603
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S3V7X6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7X6_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.710e-16 Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 4 YRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEP-FSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIE 267
+RT +DIR P+++RNER AMQ L+++V L+ Y SL D V L++ + P FSNRRHA IQV GEK VL H+ +AQT L F I+
Sbjct: 597 FRTCRDIRNPINLRNERGAMQYLMKVVASQLEAYTCSLAQDIVDLRDEEVYPMFSNRRHAKIQVRGEKEVLHHFGQWAQTALHIFDVID 685
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: W7TY73_9STRA (Rubisco LS methyltransferase, substrate-binding domain protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TY73_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.080e-16 Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLK---NGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIEASD 276
+++T +DI +P+S+ NE + LL++V + L LYPT LEDD L + L PFSNRRHALIQV GEK VL + T L T ++ SD
Sbjct: 30 MFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTAL---TLLDVSD 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12732.1721.1 >prot_H-paniculata_contig12732.1721.1 ID=prot_H-paniculata_contig12732.1721.1|Name=mRNA_H-paniculata_contig12732.1721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGback to top mRNA from alignment at H-paniculata_contig12732:6302..7124- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12732.1721.1 ID=mRNA_H-paniculata_contig12732.1721.1|Name=mRNA_H-paniculata_contig12732.1721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=823bp|location=Sequence derived from alignment at H-paniculata_contig12732:6302..7124- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12732:6302..7124- >mRNA_H-paniculata_contig12732.1721.1 ID=mRNA_H-paniculata_contig12732.1721.1|Name=mRNA_H-paniculata_contig12732.1721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig12732:6302..7124- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |