mRNA_H-paniculata_contig12732.1721.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12732.1721.1
Unique NamemRNA_H-paniculata_contig12732.1721.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: D8LR76_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR76_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.940e-36
Identity = 65/96 (67.71%), Postives = 79/96 (82.29%), Query Frame = 1
Query:    1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIEASDMASR 288
            +YRTVKD+RFPLSVRNE AAM++LL L    LD YPT+LE+D+  LKNGGLEPFSNRRHALIQV GEKVVL HY+D A+T LAC  A++ +++ SR
Sbjct:  422 MYRTVKDVRFPLSVRNEVAAMERLLLLTTGALDAYPTTLEEDRAALKNGGLEPFSNRRHALIQVYGEKVVLAHYVDLAETALACLAAVDTTELVSR 517          
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A6V1NVS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVS5_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 3.360e-22
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVLA 249
            +YRT KDIRFP  +RNE+AA++    + +E L  YP + EDD+  L++G L+PFSN+RHA+IQV GEK +L HYLD  +T LA
Sbjct:  326 IYRTAKDIRFPFGLRNEKAALEVFAGICEEYLSKYPATYEDDKALLESGSLKPFSNQRHAVIQVMGEKKILLHYLDLCRTALA 408          
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S2FMX3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FMX3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.110e-19
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   10 TVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVL 246
            TVKDIRFP+S+RNE+AA+   + ++ + L  YP SLE+D+V L    L PFSN RHA+IQV+GEK VL HY    Q  L
Sbjct:  162 TVKDIRFPMSLRNEKAALTMFVGMINDKLAAYPRSLEEDKVLLAGDSLTPFSNERHAVIQVAGEKEVLEHYKTHCQVAL 240          
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S1BNT8_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNT8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.530e-18
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVL 246
            ++RT KDIRFPLS+RNERAA++ LL++V+  +  Y TSL++D  TL++     FSN R+A++QV GEK VL+HY +FA T +
Sbjct:  409 MFRTAKDIRFPLSLRNERAALEHLLQIVRCAMSEYTTSLKEDIRTLESNQFPMFSNERNAIVQVKGEKEVLQHYENFAVTAI 490          
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S2P8K8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P8K8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.530e-18
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEP-FSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIEASD 276
            +YRT KD+RF +S++NERAA+Q L  +V++ L  YPT+L++D V L++  L P FSN RHA IQV GEK VL HY   A+  L   T IE  D
Sbjct:  423 MYRTCKDVRFAISIKNERAALQLLSHVVEKALAQYPTTLDEDNVMLRSPDLLPAFSNARHATIQVRGEKEVLHHYKKLAEMAL---TVIELDD 512          
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A1E7FP55_9STRA (Ribulose-1,5-bisphosphate carboxylase-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FP55_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.030e-17
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    4 YRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGL-EPFSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIE 267
            YR+ +DIR PLS+RNER AM  LL+++   L  YPT+L  D+V L + GL  PFSN RHA IQV GEK VL H+  +A+T L     IE
Sbjct:  438 YRSCRDIRHPLSLRNERMAMMNLLQIISIALAQYPTALSIDKVDLSDEGLYPPFSNVRHAKIQVRGEKEVLHHFARWARTALEVLDVIE 526          
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S1XR30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR30_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.530e-17
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    4 YRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVL 246
            YRT+K++  P+S+ NER AM+  L ++      +P +LE+D   L++G L PFSN RHALIQV GEKVVLR + DF  T +
Sbjct:  354 YRTIKNVSRPISIENERKAMELFLNMLTAIERAFPRTLEEDAEALRHGNLAPFSNERHALIQVKGEKVVLRFFQDFTSTCI 434          
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S2ER73_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ER73_TRICV)

HSP 1 Score: 83.6 bits (205), Expect = 1.230e-16
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 YRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEP-FSNRRHALIQVSGEKVVLRHYLDFAQTVL 246
            YRT +DIR PL +RNERAAM+ L+  V   L +YPT+L  D + L++    P FSN+RHA IQV GEK VL HY  +A+T L
Sbjct:  522 YRTCRDIRHPLGLRNERAAMEHLMETVGRALAMYPTTLTQDVIDLEDEMSYPRFSNKRHAKIQVRGEKEVLHHYAQWARTSL 603          
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: A0A7S3V7X6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7X6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.710e-16
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    4 YRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGGLEP-FSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIE 267
            +RT +DIR P+++RNER AMQ L+++V   L+ Y  SL  D V L++  + P FSNRRHA IQV GEK VL H+  +AQT L  F  I+
Sbjct:  597 FRTCRDIRNPINLRNERGAMQYLMKVVASQLEAYTCSLAQDIVDLRDEEVYPMFSNRRHAKIQVRGEKEVLHHFGQWAQTALHIFDVID 685          
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Match: W7TY73_9STRA (Rubisco LS methyltransferase, substrate-binding domain protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TY73_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.080e-16
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLK---NGGLEPFSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIEASD 276
            +++T +DI +P+S+ NE   +  LL++V + L LYPT LEDD   L    +  L PFSNRRHALIQV GEK VL  +     T L   T ++ SD
Sbjct:   30 MFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTAL---TLLDVSD 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12732.1721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR76_ECTSI2.940e-3667.71SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6V1NVS5_HETAK3.360e-2254.22Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2FMX3_9STRA2.110e-1954.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1BNT8_9STRA1.530e-1852.44Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2P8K8_9STRA1.530e-1851.61Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1E7FP55_9STRA1.030e-1752.81Ribulose-1,5-bisphosphate carboxylase-like protein... [more]
A0A7S1XR30_9STRA4.530e-1749.38Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2ER73_TRICV1.230e-1653.66Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3V7X6_9STRA1.710e-1650.56Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
W7TY73_9STRA2.080e-1645.26Rubisco LS methyltransferase, substrate-binding do... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12732contigH-paniculata_contig12732:6302..7124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.2e-30
Seed eggNOG ortholog2880.D8LR76
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.223459-CDS-H-paniculata_contig12732:6301..64601622928996.223459-CDS-H-paniculata_contig12732:6301..6460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12732 6302..6460 -
1691480695.2871473-CDS-H-paniculata_contig12732:6301..64601691480695.2871473-CDS-H-paniculata_contig12732:6301..6460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12732 6302..6460 -
1622928996.2372572-CDS-H-paniculata_contig12732:6983..71241622928996.2372572-CDS-H-paniculata_contig12732:6983..7124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12732 6984..7124 -
1691480695.2985835-CDS-H-paniculata_contig12732:6983..71241691480695.2985835-CDS-H-paniculata_contig12732:6983..7124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12732 6984..7124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12732.1721.1prot_H-paniculata_contig12732.1721.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12732 6302..7124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12732.1721.1

>prot_H-paniculata_contig12732.1721.1 ID=prot_H-paniculata_contig12732.1721.1|Name=mRNA_H-paniculata_contig12732.1721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
VYRTVKDIRFPLSVRNERAAMQKLLRLVKEGLDLYPTSLEDDQVTLKNGG
LEPFSNRRHALIQVSGEKVVLRHYLDFAQTVLACFTAIEASDMASRYVR*
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mRNA from alignment at H-paniculata_contig12732:6302..7124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12732.1721.1 ID=mRNA_H-paniculata_contig12732.1721.1|Name=mRNA_H-paniculata_contig12732.1721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=823bp|location=Sequence derived from alignment at H-paniculata_contig12732:6302..7124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATACCGGACTGTCAAAGACATTCGTTTCCCGCTCAGCGTGCGCAATGA GAGAGCGGCCATGCAGAAGCTATTAAGATTGGTGAAGGAAGGCCTGGACC TTTACCCCACGTCTCTGGAGGATGATCAAGTTACTCTGAAGGTGCGGTAG TCGTCCACGCTCCGTACTCCCCTTTTATTGGATACGTTGAGATTATTCTC ATTTCGTCTTCGAATAAGCTTTCGATTCTGTACTCGAGTGAATTCTGACA AACGAATCTTGGTGCGAGTGCAGTGAGGCGTTGTGCATGGGCCAGGACAA ACCGCTGGAGTAGCCATGGTTGTACTCCACTAGGGATACCAAAAACGGGA AGTTGTCCATTTTTTGTCTAATACAGTCAATGCTAGTACTTGGCAAATAT TGATGTCAATGTCTTGTCATATGGCCGTCCGCTCCATGGCTTTATTGTTA CCGTACTTGAACAAGGAAGATTTGTTTTCGTGCCACTGCCGTGAGGTATG TCGACAAGATGACGGCAGTTCTATTCGATCCTACGACATGAGTATGTGAC TGCTTTTTCAGTCAATTGTCCCCTCCAAAAGGGTGAAATCACTGCTATAT ATACCGTTTCACGTCGACTATTTTTGTACATGTTATTTTGTGTCTCTCTT GCTTGGCGCCGCAGAACGGAGGTTTAGAACCGTTTTCCAATAGGCGACAT GCGCTCATCCAGGTGTCCGGGGAGAAAGTGGTGCTTCGGCACTACCTTGA CTTTGCGCAGACGGTATTGGCGTGCTTCACCGCGATAGAAGCGTCGGACA TGGCTAGCAGGTACGTCCGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12732:6302..7124-

>mRNA_H-paniculata_contig12732.1721.1 ID=mRNA_H-paniculata_contig12732.1721.1|Name=mRNA_H-paniculata_contig12732.1721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig12732:6302..7124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATACCGGACTGTCAAAGACATTCGTTTCCCGCTCAGCGTGCGCAATGA
GAGAGCGGCCATGCAGAAGCTATTAAGATTGGTGAAGGAAGGCCTGGACC
TTTACCCCACGTCTCTGGAGGATGATCAAGTTACTCTGAAGGTATACCGG
ACTGTCAAAGACATTCGTTTCCCGCTCAGCGTGCGCAATGAGAGAGCGGC
CATGCAGAAGCTATTAAGATTGGTGAAGGAAGGCCTGGACCTTTACCCCA
CGTCTCTGGAGGATGATCAAGTTACTCTGAAGAACGGAGGTTTAGAACCG
TTTTCCAATAGGCGACATGCGCTCATCCAGGTGTCCGGGGAGAAAGTGGT
GCTTCGGCACTACCTTGACTTTGCGCAGACGGTATTGGCGTGCTTCACCG
CGATAGAAGCGTCGGACATGGCTAGCAGGTACGTCCGTTAAAACGGAGGT
TTAGAACCGTTTTCCAATAGGCGACATGCGCTCATCCAGGTGTCCGGGGA
GAAAGTGGTGCTTCGGCACTACCTTGACTTTGCGCAGACGGTATTGGCGT
GCTTCACCGCGATAGAAGCGTCGGACATGGCTAGCAGGTACGTCCGTTAA
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