mRNA_H-paniculata_contig9460.17209.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Match: D8LEY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEY4_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 6.880e-16 Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = 2 Query: 173 MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKV-QAAKGILEDPVQARQALKEAEKALREATSNTTGPAQGGSVTSNFERFKRALKEEV 451
MAQFLI++VN+FASEIITKRLANSR+FQQFA+KTH KV Q K + ++P +A + ++ A + ++ A+ SV S+FERFK ALK+EV
Sbjct: 1 MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKVEQTKKKVADNPGEAAKLMRGAGEKVK---------AEVDSVASSFERFKAALKKEV 85
BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Match: A0A836CNG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG9_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.570e-12 Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 2 Query: 173 MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKVQAAKGILEDPVQARQALKEAEKALREATSNTTGPAQGGSVTSNFERFKRALKEEVERDL 463
M +++N+FASE+ITKRLA S++FQ A+KTH VQ +G + DP ++ KEA K + S + S RF+RAL EE+ +D+
Sbjct: 1 MNALFTKIINHFASEMITKRLAQSKTFQDMALKTHQHVQKGRGAINDPKLQQELYKEASKVASQVVSKEAVSQKASSFGQTLSRFRRALGEEINKDI 97
BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Match: A0A7S1BLH8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLH8_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.610e-7 Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 2 Query: 173 MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKVQAAKGILEDPVQARQALKE-AEKALREATSN--TTGPAQGGSVTSNFER----------FKRALKEEVERDLRGGGK 478
M QF+ R+ NY A+E++ K LANSR+FQ+FA++TH+ +QA K +D V+ + LKE + L EA T G A S R F RA EV++D GGG+
Sbjct: 1 MNQFIQRVANYIANEVLIKGLANSRTFQRFALRTHENIQALK---KDQVRNIETLKEQVDTVLDEAARGAATAGSASAKQNASGNVRPVPPIGGVVGFFRAFAREVKKDFGGGGR 112
BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Match: A0A7S2AKF4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKF4_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 3.420e-5 Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 2 Query: 173 MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKVQAAKGILEDPVQARQALKEAEKALREATSNTTGPAQGGS------------VTSNFERFKRALKEEVERDL 463
MA F+ R+ + A+EI+ K+LA +RSFQQFAV+T + V+ I ++ V K ++E S T A GG ++S ++ R L+EE+E+DL
Sbjct: 1 MAAFIQRVATWLANEILVKKLAENRSFQQFAVRTAETVEK---ITKEGVT---------KGVQEGISKTATTAVGGEAAVDSVRRTISQISSETSKYTRTLQEEIEKDL 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9460.17209.1 >prot_H-paniculata_contig9460.17209.1 ID=prot_H-paniculata_contig9460.17209.1|Name=mRNA_H-paniculata_contig9460.17209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKVQAAKGILEDPVQback to top mRNA from alignment at H-paniculata_contig9460:2707..5993- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9460.17209.1 ID=mRNA_H-paniculata_contig9460.17209.1|Name=mRNA_H-paniculata_contig9460.17209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3287bp|location=Sequence derived from alignment at H-paniculata_contig9460:2707..5993- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9460:2707..5993- >mRNA_H-paniculata_contig9460.17209.1 ID=mRNA_H-paniculata_contig9460.17209.1|Name=mRNA_H-paniculata_contig9460.17209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig9460:2707..5993- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |