mRNA_H-paniculata_contig9460.17209.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9460.17209.1
Unique NamemRNA_H-paniculata_contig9460.17209.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Match: D8LEY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEY4_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.880e-16
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = 2 
Query:  173 MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKV-QAAKGILEDPVQARQALKEAEKALREATSNTTGPAQGGSVTSNFERFKRALKEEV 451
            MAQFLI++VN+FASEIITKRLANSR+FQQFA+KTH KV Q  K + ++P +A + ++ A + ++         A+  SV S+FERFK ALK+EV
Sbjct:    1 MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKVEQTKKKVADNPGEAAKLMRGAGEKVK---------AEVDSVASSFERFKAALKKEV 85
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BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Match: A0A836CNG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.570e-12
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 2 
Query:  173 MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKVQAAKGILEDPVQARQALKEAEKALREATSNTTGPAQGGSVTSNFERFKRALKEEVERDL 463
            M     +++N+FASE+ITKRLA S++FQ  A+KTH  VQ  +G + DP   ++  KEA K   +  S      +  S      RF+RAL EE+ +D+
Sbjct:    1 MNALFTKIINHFASEMITKRLAQSKTFQDMALKTHQHVQKGRGAINDPKLQQELYKEASKVASQVVSKEAVSQKASSFGQTLSRFRRALGEEINKDI 97
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BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Match: A0A7S1BLH8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLH8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.610e-7
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 2 
Query:  173 MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKVQAAKGILEDPVQARQALKE-AEKALREATSN--TTGPAQGGSVTSNFER----------FKRALKEEVERDLRGGGK 478
            M QF+ R+ NY A+E++ K LANSR+FQ+FA++TH+ +QA K   +D V+  + LKE  +  L EA     T G A      S   R          F RA   EV++D  GGG+
Sbjct:    1 MNQFIQRVANYIANEVLIKGLANSRTFQRFALRTHENIQALK---KDQVRNIETLKEQVDTVLDEAARGAATAGSASAKQNASGNVRPVPPIGGVVGFFRAFAREVKKDFGGGGR 112
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BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Match: A0A7S2AKF4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKF4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.420e-5
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 2 
Query:  173 MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKVQAAKGILEDPVQARQALKEAEKALREATSNTTGPAQGGS------------VTSNFERFKRALKEEVERDL 463
            MA F+ R+  + A+EI+ K+LA +RSFQQFAV+T + V+    I ++ V          K ++E  S T   A GG             ++S   ++ R L+EE+E+DL
Sbjct:    1 MAAFIQRVATWLANEILVKKLAENRSFQQFAVRTAETVEK---ITKEGVT---------KGVQEGISKTATTAVGGEAAVDSVRRTISQISSETSKYTRTLQEEIEKDL 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9460.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEY4_ECTSI6.880e-1654.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNG9_9STRA1.570e-1239.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1BLH8_9STRA1.610e-739.13Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2AKF4_9STRA3.420e-533.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9460contigH-paniculata_contig9460:2707..5993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006020.1
Exons2
Model size1610
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9460.17209.1prot_H-paniculata_contig9460.17209.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9460 3824..5821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931176.219125-UTR-H-paniculata_contig9460:2706..38231622931176.219125-UTR-H-paniculata_contig9460:2706..3823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9460 2707..3823 -
1691481624.7844057-UTR-H-paniculata_contig9460:2706..38231691481624.7844057-UTR-H-paniculata_contig9460:2706..3823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9460 2707..3823 -
1622931176.285085-UTR-H-paniculata_contig9460:5821..59931622931176.285085-UTR-H-paniculata_contig9460:5821..5993Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9460 5822..5993 -
1691481624.826911-UTR-H-paniculata_contig9460:5821..59931691481624.826911-UTR-H-paniculata_contig9460:5821..5993Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9460 5822..5993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931176.2373853-CDS-H-paniculata_contig9460:3823..40331622931176.2373853-CDS-H-paniculata_contig9460:3823..4033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9460 3824..4033 -
1691481624.8029764-CDS-H-paniculata_contig9460:3823..40331691481624.8029764-CDS-H-paniculata_contig9460:3823..4033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9460 3824..4033 -
1622931176.261331-CDS-H-paniculata_contig9460:5710..58211622931176.261331-CDS-H-paniculata_contig9460:5710..5821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9460 5711..5821 -
1691481624.8171163-CDS-H-paniculata_contig9460:5710..58211691481624.8171163-CDS-H-paniculata_contig9460:5710..5821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9460 5711..5821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9460.17209.1

>prot_H-paniculata_contig9460.17209.1 ID=prot_H-paniculata_contig9460.17209.1|Name=mRNA_H-paniculata_contig9460.17209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MAQFLIRLVNYFASEIITKRLANSRSFQQFAVKTHDKVQAAKGILEDPVQ
ARQALKEAEKALREATSNTTGPAQGGSVTSNFERFKRALKEEVERDLRGG
GKGRRT*
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mRNA from alignment at H-paniculata_contig9460:2707..5993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9460.17209.1 ID=mRNA_H-paniculata_contig9460.17209.1|Name=mRNA_H-paniculata_contig9460.17209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3287bp|location=Sequence derived from alignment at H-paniculata_contig9460:2707..5993- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTGCCTTCGACTAGTAGAACGTAACCCCGAACGACCTTGAATCTACC
GCAGATAAGTTCGCCTATTCAAACGGAGCGATTGAGAATTGTTTACATCA
TCGCCGGTATTCAATCTTTGATTTGGAGCAACACTTGGACAACATAAACA
GCACAACACACAGCCGGCAAGGATGGCGCAATTCCTCATCAGACTGGTCA
ACTATTTTGCGAGCGAGATTATCACTAAGCGGTTGGCCAATAGTCGCAGT
TTTCAGCAGTTCGCCGTCAAGACCCATGACAAGGTGATAAATTAAACTAA
ACTTCACTGCTCCATCTGCGCGTCTGGCAGCGAGTAAAACTGGAACAATT
GGGATTGGTTTTGGGAAAAGTGTGGGCAGTTGTGGGTGAAATACGGAATT
GGGTTTGTGCGTTGGTCGCGACTTCGTGACGTTGATAGTGGCTCACCTGG
CGGAGACAAAGAGTAGAGACAGTAGACTCCAGGATCCAGTCACCCTCCTC
GCTTACAGTTAGCATAAGCGGAAGTCAGCTTCTACTATACCGAGTGTAGT
TCGCAAAGCAATGTTTTAGCTCTTGTGCTGTTGTGTGCTGACTGTAACTG
TCCGTACTGTAGTGTTTTTTAGAGAAGTTGATAGCTCCCTCTAGTGGCCA
GTGTAAAGGTGCATCCTTCTAGAAAGGCGCCTTTGCAACCGTATGACGGT
CTGCTGGGTTGCAGCCATCAGTTTATTTAACCGCGTGTCCTCCCGCATCT
GTGGGCTGACAAAAGCAAGGATGGTGTACGAACAAATCTCAAATATCAGT
TAAAGGCAATCATAATCGCTCACAAGCTTCTCCACCGGGAATGATCATGT
TTTTCGTTCGGCTTCCAATACCTTGACATTTTTTCAACATGTTGACTGTC
AACTATCGCACAAATTTCCAGGGGGGATTCTACCTCCAGAGCCGGCAACG
AGTATCCCCGTCTGTTCGTGTCAACGTTGAACTACGACGGTCGTTTTAGG
TTCACATACTCACTGTAATGTCGGATTTCCATAAGACGATCGCTACGAGG
CACACGTGACACCATGTCCGCCGGAGAGTGAAGCTAAAAGGCTCGATTGT
CCGCCACGAAGTATTGCTGGTGGACTATCATATGCCATTCGCTTCGCCGC
CTCAAAAGAGAAGCTTGACCTACCATGAGTACAGTTGTCGGTCGATCCCT
CATGTACGCTAAGTCACTTCATTGGCCATGCTGTTTTTTTTCTTTTATTA
CTGTTGTTTGGCAACTACGGCTGTGGTAGGTGGGCCCTTCTAAGGGGCAC
CGAGATAGGAGATTATGAGTTATAAGGGACCATAAATTTGTGCACACGGA
AGGGGCCTCAGTTCCACCTTCGTCTTCAAGCAAGCACCCCCTGGAACCTT
GGCTCTCCCTCCGAGCTCTTTTATCGACGTTTCTGTATGTTTCCTGTTGA
TGCCATTAGACCAGGGGTTCCTGCCCGAAAGTTATTGTGGTTTATTGACA
AATAGGGGGTTTGTCCGGCCGTTGGTACGTGTAAACTAGTTTGTTTTCCC
TGCCCCCAATAAGGCCTAGTAGATCCATTATAACCAGCCGAAATAATAAG
GGACTTCGGGATATGAGGGCCCTCACGAGCCTGGGACGACATGGTCCCGT
CAATGGGGCCACCTACTCTGGTACATTTTGCAGTCAGCTGTGTGCTTTCA
CATGGTTGACTTTGAAATGACGGGGTGAATTTCTAGAGCTAACTGCCGAT
GGTCGTGCCGAGTTTATCTCACAGTAGCAAGGAGTAGCCCTGTTCAACAG
AAGATGCCGCCATCCTCACTCATCAAGAAGAGATCATATGAGGGTCGGTT
GCTGATAAGATCATGGTTCGTAGTACGGATTACTCGAGACTTGAGAGAAA
GAAAAGACACTCACGGCGGTCAACATGTCGGTTACGCCACCGGGAAAAAA
TATGTTTCAGGTACAAGCGGCCAAAGGCATCTTGGAGGACCCCGTGCAGG
CGCGGCAAGCGTTGAAAGAGGCCGAGAAAGCGTTGCGAGAAGCGACGTCG
AATACGACAGGGCCAGCGCAGGGAGGTTCAGTAACAAGTAATTTCGAACG
GTTTAAGCGGGCGTTAAAGGAGGAGGTGGAGCGAGATCTTCGAGGGGGGG
GTAAGGGCAGGAGAACGTGACACGAGCAACAGCGACTGCGGGCACACGGA
CACGGATGCTGGCGGGATGTACATAAAAGTTTGCGCTGTCGTTGCGCACG
ATGGCGGGCATAATGAAAGGTTTTTGTGATGACAAATGCGGATGTCATCT
CCCGGTTACCACGATCTCTTGTACGCGTTGTCGATTTTTGTGGTTCCATT
CAGACGTGAGGCGGAGGGATCCGCTTCAATAATCGTGGCGGCGAGAGGTG
ACTAACGACCAGTTTATTCTTACGTACCGCAGGGTTCTTTTTTTCTTCAC
AACAGCCGTTTTGTCGTTCGTGGATACGCACATGTTGTTGAGCGATTCGT
TGGAGAGAGAAGCTCGACTGGGTGTTCGTATAGACCGGATGGAAATTGGT
ACAAAGCACACATGCGGGGTTCGATGCTCTTGTGTAGGTCTATTATTGTC
ATATTGAGTGATGCCGATTTTGCCGCCAACTGCAGTTGTTTTGCCGAGGG
AGCCGAAACGCAACTAAAGGGTGGTCCCTTGTTTTTCGTTATGCCGTCGC
TCGTTTTTGCCTGTATCTTCTACAACCTCTTAAACGACTGTCCTTGAATT
TGTGAGGGCAAAGCAGGACAGATTGAGCTAGTGATGTCCTCGCGCAATTC
ATTTTGCGCCGTTCTACCGAAAGGGCATATGTCACTGTTGAAAACAGCAG
CACTGAAAAATATTATGGGTTTCGGCAGCTTGCCGCCAGAGCGTTTTAAG
GGCCGCCGCAGACAGAGGGCGATGCAGCCGCTGATTCGGCGCAAGTCCAG
GGTGGCGAGCTGATGCCAAACCCTTGAGCTGACAACGGGTCTGATCAGTT
AAACGCATACGTAATATAGAGTTCCAAATACGTGGGAAGGGTCAGAAATT
AAGGGAAACTGACGCAAATGGGGTATTTGTGGCTCCCCAAATACTTCCCT
TCCCCGGGCGCCGACCGGTTGGAGGCGTATTTTTAACATTGCCACGTAAC
ACTCTCGAACGAAACACTGTGTACTCAGTTGTTTTATGCTCTGTGATAAT
GTCAATACCGACAAAGTCCCGCAAGGCAACATGAAGCCGCAGCGACATCA
TAGGTTTGAGGATAATCCCATAGAGTCGGGGTACGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig9460:2707..5993-

>mRNA_H-paniculata_contig9460.17209.1 ID=mRNA_H-paniculata_contig9460.17209.1|Name=mRNA_H-paniculata_contig9460.17209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig9460:2707..5993- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCAATTCCTCATCAGACTGGTCAACTATTTTGCGAGCGAGATTAT
CACTAAGCGGTTGGCCAATAGTCGCAGTTTTCAGCAGTTCGCCGTCAAGA
CCCATGACAAGATGGCGCAATTCCTCATCAGACTGGTCAACTATTTTGCG
AGCGAGATTATCACTAAGCGGTTGGCCAATAGTCGCAGTTTTCAGCAGTT
CGCCGTCAAGACCCATGACAAGGTACAAGCGGCCAAAGGCATCTTGGAGG
ACCCCGTGCAGGCGCGGCAAGCGTTGAAAGAGGCCGAGAAAGCGTTGCGA
GAAGCGACGTCGAATACGACAGGGCCAGCGCAGGGAGGTTCAGTAACAAG
TAATTTCGAACGGTTTAAGCGGGCGTTAAAGGAGGAGGTGGAGCGAGATC
TTCGAGGGGGGGGTAAGGGCAGGAGAACGTGAGTACAAGCGGCCAAAGGC
ATCTTGGAGGACCCCGTGCAGGCGCGGCAAGCGTTGAAAGAGGCCGAGAA
AGCGTTGCGAGAAGCGACGTCGAATACGACAGGGCCAGCGCAGGGAGGTT
CAGTAACAAGTAATTTCGAACGGTTTAAGCGGGCGTTAAAGGAGGAGGTG
GAGCGAGATCTTCGAGGGGGGGGTAAGGGCAGGAGAACGTGA
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