Homology
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
D7FIP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP1_ECTSI)
HSP 1 Score: 165 bits (418), Expect = 2.830e-50
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHKQ 270
VCLDE G+QM+SPAFSDFLF+KLE GGSRLTFVVGGAEGLPPGLK KPP GG KLSLSSMTFTHLWAR LLAEQIYRASEIRRGSKYHK+
Sbjct: 100 VCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 189
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
A0A6H5KEB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB2_9PHAE)
HSP 1 Score: 164 bits (415), Expect = 1.530e-49
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHKQ 270
VCLDE G+QM+SPAFSDF+F+KLE GGSRLTFVVGGAEGLPPGLK KPP GG KLSLSSMTFTHLWAR LLAEQIYRASEIRRGSKYHK+
Sbjct: 121 VCLDEGGRQMNSPAFSDFVFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 210
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
A0A835ZC53_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC53_9STRA)
HSP 1 Score: 114 bits (285), Expect = 2.590e-30
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
+C+DE GKQ+DS +FS++L+ KLE GGSRL FV+GGAEGLP +K++ + K+SLS M TH WA LL+EQIYRA+EIR+G+KYHK
Sbjct: 85 ICMDERGKQLDSTSFSEYLYKKLEIGGSRLAFVIGGAEGLPASMKAE--KSYDKMSLSKMVLTHTWAWALLSEQIYRATEIRKGTKYHK 171
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
A0A7S2R9V3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9V3_9STRA)
HSP 1 Score: 112 bits (281), Expect = 3.500e-30
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
+CLD G Q S FSD LF+KLE GGSRL FV+GGAEGLPP LK + G +SLS +TFTH AR+LLAEQ+YRA+EIRRGS YHK
Sbjct: 49 ICLDPTGAQWSSERFSDMLFSKLEDGGSRLMFVIGGAEGLPPELK----RSGNLMSLSKLTFTHQMARMLLAEQVYRAAEIRRGSGYHK 133
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
W7TG35_9STRA (Ribosomal rna large subunit methyltransferase h n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG35_9STRA)
HSP 1 Score: 110 bits (274), Expect = 3.440e-28
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHKQ 270
+CLDE GKQ+ S +D L+ +LE GG+RL+ V+GGAEGLPP L++ SLS +TFTH WARVLLAEQIYRASEI+RGS YHK+
Sbjct: 128 ICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELW----SLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
A0A7W1YWG3_9BACT (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1YWG3_9BACT)
HSP 1 Score: 102 bits (253), Expect = 7.360e-26
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
+CLD G + S FS FL KL+ GGSRLTF++GGA+GLP LKS P LSLS MTFTH R++L EQIYRA EI RGS+YHK
Sbjct: 56 ICLDPQGSSLSSEEFSSFLHQKLQLGGSRLTFIIGGADGLPTTLKSSP-----LLSLSKMTFTHQITRLILVEQIYRAFEIARGSQYHK 139
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
UPI001BC8D685 (23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH n=1 Tax=Parachlamydia sp. AcF125 TaxID=2795736 RepID=UPI001BC8D685)
HSP 1 Score: 102 bits (253), Expect = 7.570e-26
Identity = 56/89 (62.92%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
VCLD GK + S FS FL KLE GGSRLTFV+GGAEGLP LK Q +SLS +TFTH ARV+L EQIYRA EI +GS+YHK
Sbjct: 56 VCLDPQGKMLSSEQFSSFLMRKLEEGGSRLTFVIGGAEGLPLFLK----QNKEAISLSLLTFTHQIARVVLIEQIYRALEIAKGSRYHK 140
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
A0A7S1IHQ0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IHQ0_9EUGL)
HSP 1 Score: 100 bits (250), Expect = 8.560e-26
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKL----------SLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
VCLDE KQM S FS+F++ +LE GGSR TFV+GGA+GLP L+ + GGT L SLS MTF H +ARV+L EQ+YRA++IR G+KYH+
Sbjct: 9 VCLDENAKQMTSEDFSEFVYQQLEQGGSRCTFVIGGADGLPMSLRPRS-YGGTGLGPTGPQMLYLSLSKMTFVHQFARVVLVEQLYRATQIRNGTKYHR 106
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
A0A0M0K3N9_9EUKA (Ribosomal RNA large subunit methyltransferase h n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3N9_9EUKA)
HSP 1 Score: 103 bits (256), Expect = 1.040e-25
Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
+ LDE G Q S F+ F LEAGGSR+TF +GGA+GLPP LK+ P G LSLS +TFTH AR+LL EQIYRA+EIRRGS YHK
Sbjct: 106 IILDERGPQCTSVEFTSRFFDALEAGGSRVTFFIGGADGLPPALKADP---GRLLSLSRLTFTHQMARLLLIEQIYRATEIRRGSGYHK 191
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match:
A0A7S2UUR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR8_9STRA)
HSP 1 Score: 101 bits (251), Expect = 5.760e-25
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
V LDE GK ++S FS ++ LE GGSRL FV+GGAEGLPP LK++ +SLS MTFTH AR++LAEQIYRA+EIR+G+ YHK
Sbjct: 106 VTLDERGKLLNSKEFSQMMYKMLEDGGSRLHFVIGGAEGLPPSLKTEAKH---LISLSKMTFTHQQARLILAEQIYRATEIRKGTGYHK 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 2.83e-50 / Id = 88.89 Expect = 1.53e-49 / Id = 87.78 Expect = 2.59e-30 / Id = 60.67 Expect = 3.50e-30 / Id = 65.17 Expect = 3.44e-28 / Id = 61.11 Expect = 7.36e-26 / Id = 59.55 Expect = 7.57e-26 / Id = 62.92 Expect = 8.56e-26 / Id = 54.55 Expect = 1.04e-25 / Id = 61.80 Expect = 5.76e-25 / Id = 59.55 Sequence D7FIP1_ECTSI A0A6H5KEB2_9PHAE A0A835ZC53_9STRA A0A7S2R9V3_9STRA W7TG35_9STRA A0A7W1YWG3_9BACT UPI001BC8D685 A0A7S1IHQ0_9EUGL A0A0M0K3N9_9EUKA A0A7S2UUR8_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Bacteria
Seed ortholog score 89.7
Seed ortholog evalue 6.7e-16
Seed eggNOG ortholog 716544.wcw_1182
Preferred name rlmH
KEGG ko ko:K00783
Hectar predicted targeting category other localisation
GOs GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042802,GO:0042803,GO:0043021,GO:0043022,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0044877,GO:0046483,GO:0046983,GO:0070037,GO:0070038,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc. Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
EggNOG OGs 2JGAT@204428,COG1576@1,COG1576@2
EC 2.1.1.177
COG Functional cat. J
Best tax level Chlamydiae
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko01000,ko03009
Exons 1
Model size 273
Cds size 246
Stop 1
Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9458.17203.1
>prot_H-paniculata_contig9458.17203.1 ID=prot_H-paniculata_contig9458.17203.1|Name=mRNA_H-paniculata_contig9458.17203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSS MTFTHLWARVLLAEQIYRASEIRRGSKYHKQ* back to top mRNA from alignment at H-paniculata_contig9458:506..778+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9458.17203.1 ID=mRNA_H-paniculata_contig9458.17203.1|Name=mRNA_H-paniculata_contig9458.17203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig9458:506..778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)GTGTGCCTCGATGAAGCCGGGAAGCAA ATGGATTCCCCAGCCTTTTCCGA
CTTTCTCTTTACCAAGTTGGAGGCGGGTGGATCGCGGCTGACTTTTGTGG
TCGGCGGTGCCGAGGGTCTGCCCCCAGGTCTCAAGAGCAAGCCTCCCCAG
GGAGGCACCAAGCTTTCCCTCTCTAGCATGACGTTCACCCATCTCTGGGC
AAGGGTGCTGTTAGCAGAGCAGATTTACAGAGCGTCCGAGATTCGAAGAG
GGTCCAAGTATCATAAGCAATGA back to top Coding sequence (CDS) from alignment at H-paniculata_contig9458:506..778+
>mRNA_H-paniculata_contig9458.17203.1 ID=mRNA_H-paniculata_contig9458.17203.1|Name=mRNA_H-paniculata_contig9458.17203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig9458:506..778+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGATTCCCCAGCCTTTTCCGACTTTCTCTTTACCAAGTTGGAGGCGGG TGGATCGCGGCTGACTTTTGTGGTCGGCGGTGCCGAGGGTCTGCCCCCAG GTCTCAAGAGCAAGCCTCCCCAGGGAGGCACCAAGCTTTCCCTCTCTAGC ATGACGTTCACCCATCTCTGGGCAAGGGTGCTGTTAGCAGAGCAGATTTA CAGAGCGTCCGAGATTCGAAGAGGGTCCAAGTATCATAAGCAATGAATGG ATTCCCCAGCCTTTTCCGACTTTCTCTTTACCAAGTTGGAGGCGGGTGGA TCGCGGCTGACTTTTGTGGTCGGCGGTGCCGAGGGTCTGCCCCCAGGTCT CAAGAGCAAGCCTCCCCAGGGAGGCACCAAGCTTTCCCTCTCTAGCATGA CGTTCACCCATCTCTGGGCAAGGGTGCTGTTAGCAGAGCAGATTTACAGA GCGTCCGAGATTCGAAGAGGGTCCAAGTATCATAAGCAATGA back to top