mRNA_H-paniculata_contig9458.17203.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9458.17203.1
Unique NamemRNA_H-paniculata_contig9458.17203.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: D7FIP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP1_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.830e-50
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHKQ 270
            VCLDE G+QM+SPAFSDFLF+KLE GGSRLTFVVGGAEGLPPGLK KPP GG KLSLSSMTFTHLWAR LLAEQIYRASEIRRGSKYHK+
Sbjct:  100 VCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 189
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BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A6H5KEB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB2_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.530e-49
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHKQ 270
            VCLDE G+QM+SPAFSDF+F+KLE GGSRLTFVVGGAEGLPPGLK KPP GG KLSLSSMTFTHLWAR LLAEQIYRASEIRRGSKYHK+
Sbjct:  121 VCLDEGGRQMNSPAFSDFVFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 210
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BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A835ZC53_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC53_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.590e-30
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
            +C+DE GKQ+DS +FS++L+ KLE GGSRL FV+GGAEGLP  +K++  +   K+SLS M  TH WA  LL+EQIYRA+EIR+G+KYHK
Sbjct:   85 ICMDERGKQLDSTSFSEYLYKKLEIGGSRLAFVIGGAEGLPASMKAE--KSYDKMSLSKMVLTHTWAWALLSEQIYRATEIRKGTKYHK 171
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BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A7S2R9V3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9V3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.500e-30
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
            +CLD  G Q  S  FSD LF+KLE GGSRL FV+GGAEGLPP LK    + G  +SLS +TFTH  AR+LLAEQ+YRA+EIRRGS YHK
Sbjct:   49 ICLDPTGAQWSSERFSDMLFSKLEDGGSRLMFVIGGAEGLPPELK----RSGNLMSLSKLTFTHQMARMLLAEQVYRAAEIRRGSGYHK 133
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BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: W7TG35_9STRA (Ribosomal rna large subunit methyltransferase h n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG35_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.440e-28
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHKQ 270
            +CLDE GKQ+ S   +D L+ +LE GG+RL+ V+GGAEGLPP L++         SLS +TFTH WARVLLAEQIYRASEI+RGS YHK+
Sbjct:  128 ICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELW----SLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
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BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A7W1YWG3_9BACT (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1YWG3_9BACT)

HSP 1 Score: 102 bits (253), Expect = 7.360e-26
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
            +CLD  G  + S  FS FL  KL+ GGSRLTF++GGA+GLP  LKS P      LSLS MTFTH   R++L EQIYRA EI RGS+YHK
Sbjct:   56 ICLDPQGSSLSSEEFSSFLHQKLQLGGSRLTFIIGGADGLPTTLKSSP-----LLSLSKMTFTHQITRLILVEQIYRAFEIARGSQYHK 139
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BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: UPI001BC8D685 (23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH n=1 Tax=Parachlamydia sp. AcF125 TaxID=2795736 RepID=UPI001BC8D685)

HSP 1 Score: 102 bits (253), Expect = 7.570e-26
Identity = 56/89 (62.92%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
            VCLD  GK + S  FS FL  KLE GGSRLTFV+GGAEGLP  LK    Q    +SLS +TFTH  ARV+L EQIYRA EI +GS+YHK
Sbjct:   56 VCLDPQGKMLSSEQFSSFLMRKLEEGGSRLTFVIGGAEGLPLFLK----QNKEAISLSLLTFTHQIARVVLIEQIYRALEIAKGSRYHK 140
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BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A7S1IHQ0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IHQ0_9EUGL)

HSP 1 Score: 100 bits (250), Expect = 8.560e-26
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKL----------SLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
            VCLDE  KQM S  FS+F++ +LE GGSR TFV+GGA+GLP  L+ +   GGT L          SLS MTF H +ARV+L EQ+YRA++IR G+KYH+
Sbjct:    9 VCLDENAKQMTSEDFSEFVYQQLEQGGSRCTFVIGGADGLPMSLRPRS-YGGTGLGPTGPQMLYLSLSKMTFVHQFARVVLVEQLYRATQIRNGTKYHR 106
[Close]
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A0M0K3N9_9EUKA (Ribosomal RNA large subunit methyltransferase h n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3N9_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 1.040e-25
Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
            + LDE G Q  S  F+   F  LEAGGSR+TF +GGA+GLPP LK+ P   G  LSLS +TFTH  AR+LL EQIYRA+EIRRGS YHK
Sbjct:  106 IILDERGPQCTSVEFTSRFFDALEAGGSRVTFFIGGADGLPPALKADP---GRLLSLSRLTFTHQMARLLLIEQIYRATEIRRGSGYHK 191
[Close]
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A7S2UUR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.760e-25
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267
            V LDE GK ++S  FS  ++  LE GGSRL FV+GGAEGLPP LK++       +SLS MTFTH  AR++LAEQIYRA+EIR+G+ YHK
Sbjct:  106 VTLDERGKLLNSKEFSQMMYKMLEDGGSRLHFVIGGAEGLPPSLKTEAKH---LISLSKMTFTHQQARLILAEQIYRATEIRKGTGYHK 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIP1_ECTSI2.830e-5088.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEB2_9PHAE1.530e-4987.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZC53_9STRA2.590e-3060.67Alpha/beta knot methyltransferase n=1 Tax=Tribonem... [more]
A0A7S2R9V3_9STRA3.500e-3065.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TG35_9STRA3.440e-2861.11Ribosomal rna large subunit methyltransferase h n=... [more]
A0A7W1YWG3_9BACT7.360e-2659.55Ribosomal RNA large subunit methyltransferase H n=... [more]
UPI001BC8D6857.570e-2662.9223S rRNA (pseudouridine(1915)-N(3))-methyltransfer... [more]
A0A7S1IHQ0_9EUGL8.560e-2654.55Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0M0K3N9_9EUKA1.040e-2561.80Ribosomal RNA large subunit methyltransferase h n=... [more]
A0A7S2UUR8_9STRA5.760e-2559.55Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9458contigH-paniculata_contig9458:506..778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score89.7
Seed ortholog evalue6.7e-16
Seed eggNOG ortholog716544.wcw_1182
Preferred namerlmH
KEGG koko:K00783
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042802,GO:0042803,GO:0043021,GO:0043022,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0044877,GO:0046483,GO:0046983,GO:0070037,GO:0070038,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc.Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
EggNOG OGs2JGAT@204428,COG1576@1,COG1576@2
EC2.1.1.177
COG Functional cat.J
Best tax levelChlamydiae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size273
Cds size246
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.2032135-UTR-H-paniculata_contig9458:505..5321622931175.2032135-UTR-H-paniculata_contig9458:505..532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9458 506..532 +
1691481624.3980353-UTR-H-paniculata_contig9458:505..5321691481624.3980353-UTR-H-paniculata_contig9458:505..532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9458 506..532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.2188618-CDS-H-paniculata_contig9458:532..7781622931175.2188618-CDS-H-paniculata_contig9458:532..778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9458 533..778 +
1691481624.4107118-CDS-H-paniculata_contig9458:532..7781691481624.4107118-CDS-H-paniculata_contig9458:532..778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9458 533..778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9458.17203.1prot_H-paniculata_contig9458.17203.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9458 533..778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9458.17203.1

>prot_H-paniculata_contig9458.17203.1 ID=prot_H-paniculata_contig9458.17203.1|Name=mRNA_H-paniculata_contig9458.17203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSS
MTFTHLWARVLLAEQIYRASEIRRGSKYHKQ*
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mRNA from alignment at H-paniculata_contig9458:506..778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9458.17203.1 ID=mRNA_H-paniculata_contig9458.17203.1|Name=mRNA_H-paniculata_contig9458.17203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig9458:506..778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGCCTCGATGAAGCCGGGAAGCAAATGGATTCCCCAGCCTTTTCCGA
CTTTCTCTTTACCAAGTTGGAGGCGGGTGGATCGCGGCTGACTTTTGTGG
TCGGCGGTGCCGAGGGTCTGCCCCCAGGTCTCAAGAGCAAGCCTCCCCAG
GGAGGCACCAAGCTTTCCCTCTCTAGCATGACGTTCACCCATCTCTGGGC
AAGGGTGCTGTTAGCAGAGCAGATTTACAGAGCGTCCGAGATTCGAAGAG
GGTCCAAGTATCATAAGCAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9458:506..778+

>mRNA_H-paniculata_contig9458.17203.1 ID=mRNA_H-paniculata_contig9458.17203.1|Name=mRNA_H-paniculata_contig9458.17203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig9458:506..778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTCCCCAGCCTTTTCCGACTTTCTCTTTACCAAGTTGGAGGCGGG
TGGATCGCGGCTGACTTTTGTGGTCGGCGGTGCCGAGGGTCTGCCCCCAG
GTCTCAAGAGCAAGCCTCCCCAGGGAGGCACCAAGCTTTCCCTCTCTAGC
ATGACGTTCACCCATCTCTGGGCAAGGGTGCTGTTAGCAGAGCAGATTTA
CAGAGCGTCCGAGATTCGAAGAGGGTCCAAGTATCATAAGCAATGAATGG
ATTCCCCAGCCTTTTCCGACTTTCTCTTTACCAAGTTGGAGGCGGGTGGA
TCGCGGCTGACTTTTGTGGTCGGCGGTGCCGAGGGTCTGCCCCCAGGTCT
CAAGAGCAAGCCTCCCCAGGGAGGCACCAAGCTTTCCCTCTCTAGCATGA
CGTTCACCCATCTCTGGGCAAGGGTGCTGTTAGCAGAGCAGATTTACAGA
GCGTCCGAGATTCGAAGAGGGTCCAAGTATCATAAGCAATGA
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