mRNA_H-paniculata_contig9458.17203.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: D7FIP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP1_ECTSI) HSP 1 Score: 165 bits (418), Expect = 2.830e-50 Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHKQ 270 VCLDE G+QM+SPAFSDFLF+KLE GGSRLTFVVGGAEGLPPGLK KPP GG KLSLSSMTFTHLWAR LLAEQIYRASEIRRGSKYHK+ Sbjct: 100 VCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 189
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A6H5KEB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB2_9PHAE) HSP 1 Score: 164 bits (415), Expect = 1.530e-49 Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHKQ 270 VCLDE G+QM+SPAFSDF+F+KLE GGSRLTFVVGGAEGLPPGLK KPP GG KLSLSSMTFTHLWAR LLAEQIYRASEIRRGSKYHK+ Sbjct: 121 VCLDEGGRQMNSPAFSDFVFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 210
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A835ZC53_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC53_9STRA) HSP 1 Score: 114 bits (285), Expect = 2.590e-30 Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267 +C+DE GKQ+DS +FS++L+ KLE GGSRL FV+GGAEGLP +K++ + K+SLS M TH WA LL+EQIYRA+EIR+G+KYHK Sbjct: 85 ICMDERGKQLDSTSFSEYLYKKLEIGGSRLAFVIGGAEGLPASMKAE--KSYDKMSLSKMVLTHTWAWALLSEQIYRATEIRKGTKYHK 171
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A7S2R9V3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9V3_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.500e-30 Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267 +CLD G Q S FSD LF+KLE GGSRL FV+GGAEGLPP LK + G +SLS +TFTH AR+LLAEQ+YRA+EIRRGS YHK Sbjct: 49 ICLDPTGAQWSSERFSDMLFSKLEDGGSRLMFVIGGAEGLPPELK----RSGNLMSLSKLTFTHQMARMLLAEQVYRAAEIRRGSGYHK 133
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: W7TG35_9STRA (Ribosomal rna large subunit methyltransferase h n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG35_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.440e-28 Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHKQ 270 +CLDE GKQ+ S +D L+ +LE GG+RL+ V+GGAEGLPP L++ SLS +TFTH WARVLLAEQIYRASEI+RGS YHK+ Sbjct: 128 ICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELW----SLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A7W1YWG3_9BACT (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1YWG3_9BACT) HSP 1 Score: 102 bits (253), Expect = 7.360e-26 Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267 +CLD G + S FS FL KL+ GGSRLTF++GGA+GLP LKS P LSLS MTFTH R++L EQIYRA EI RGS+YHK Sbjct: 56 ICLDPQGSSLSSEEFSSFLHQKLQLGGSRLTFIIGGADGLPTTLKSSP-----LLSLSKMTFTHQITRLILVEQIYRAFEIARGSQYHK 139
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: UPI001BC8D685 (23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH n=1 Tax=Parachlamydia sp. AcF125 TaxID=2795736 RepID=UPI001BC8D685) HSP 1 Score: 102 bits (253), Expect = 7.570e-26 Identity = 56/89 (62.92%), Postives = 63/89 (70.79%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267 VCLD GK + S FS FL KLE GGSRLTFV+GGAEGLP LK Q +SLS +TFTH ARV+L EQIYRA EI +GS+YHK Sbjct: 56 VCLDPQGKMLSSEQFSSFLMRKLEEGGSRLTFVIGGAEGLPLFLK----QNKEAISLSLLTFTHQIARVVLIEQIYRALEIAKGSRYHK 140
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A7S1IHQ0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IHQ0_9EUGL) HSP 1 Score: 100 bits (250), Expect = 8.560e-26 Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKL----------SLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267 VCLDE KQM S FS+F++ +LE GGSR TFV+GGA+GLP L+ + GGT L SLS MTF H +ARV+L EQ+YRA++IR G+KYH+ Sbjct: 9 VCLDENAKQMTSEDFSEFVYQQLEQGGSRCTFVIGGADGLPMSLRPRS-YGGTGLGPTGPQMLYLSLSKMTFVHQFARVVLVEQLYRATQIRNGTKYHR 106
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A0M0K3N9_9EUKA (Ribosomal RNA large subunit methyltransferase h n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3N9_9EUKA) HSP 1 Score: 103 bits (256), Expect = 1.040e-25 Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267 + LDE G Q S F+ F LEAGGSR+TF +GGA+GLPP LK+ P G LSLS +TFTH AR+LL EQIYRA+EIRRGS YHK Sbjct: 106 IILDERGPQCTSVEFTSRFFDALEAGGSRVTFFIGGADGLPPALKADP---GRLLSLSRLTFTHQMARLLLIEQIYRATEIRRGSGYHK 191
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Match: A0A7S2UUR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR8_9STRA) HSP 1 Score: 101 bits (251), Expect = 5.760e-25 Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 1 VCLDEAGKQMDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSMTFTHLWARVLLAEQIYRASEIRRGSKYHK 267 V LDE GK ++S FS ++ LE GGSRL FV+GGAEGLPP LK++ +SLS MTFTH AR++LAEQIYRA+EIR+G+ YHK Sbjct: 106 VTLDERGKLLNSKEFSQMMYKMLEDGGSRLHFVIGGAEGLPPSLKTEAKH---LISLSKMTFTHQQARLILAEQIYRATEIRKGTGYHK 191 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9458.17203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9458.17203.1 >prot_H-paniculata_contig9458.17203.1 ID=prot_H-paniculata_contig9458.17203.1|Name=mRNA_H-paniculata_contig9458.17203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp MDSPAFSDFLFTKLEAGGSRLTFVVGGAEGLPPGLKSKPPQGGTKLSLSSback to top mRNA from alignment at H-paniculata_contig9458:506..778+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9458.17203.1 ID=mRNA_H-paniculata_contig9458.17203.1|Name=mRNA_H-paniculata_contig9458.17203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig9458:506..778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9458:506..778+ >mRNA_H-paniculata_contig9458.17203.1 ID=mRNA_H-paniculata_contig9458.17203.1|Name=mRNA_H-paniculata_contig9458.17203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig9458:506..778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |