prot_H-paniculata_contig9442.17195.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig9442.17195.1
Unique Name	prot_H-paniculata_contig9442.17195.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	220

Homology

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BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 2.780e-119
Identity = 172/219 (78.54%), Postives = 192/219 (87.67%), Query Frame = 0

Query:    1 MKFAVISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            MK A +++ACA    AFV PSAF  AA+   A+SSS+MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQNVRLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AF+GFLEL VMKNVE SFPGD T GGNPF + WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMS-FESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 342 bits (878), Expect = 1.270e-117
Identity = 173/219 (79.00%), Postives = 191/219 (87.21%), Query Frame = 0

Query:    1 MKFAVISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            MK AV+++ACA     F  PSAF  AALT SA++ S+MKM+ FESEIG Q P+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AFIGFLEL VMKNVE SFPGD T GGNPFGA WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct:    1 MKSAVMAVACAAA-PGFRGPSAFNGAALTTSAKACSAMKMS-FESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 4.430e-112
Identity = 161/199 (80.90%), Postives = 179/199 (89.95%), Query Frame = 0

Query:   21 SAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            SAF  AA+  SA+SSS+MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQNVRLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AF+GFLEL VMKNVE SFPGD T GGNPF + WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMS-FESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 321 bits (823), Expect = 2.440e-109
Identity = 164/214 (76.64%), Postives = 181/214 (84.58%), Query Frame = 0

Query:    6 ISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            I+ A A G++    PSAF  AAL+  A+SSS+MKM+ FESEIG Q P+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI  FIGFLEL VMKNVE SFPGD   GGNPF + WD+MS +TQ SKR IELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct:    2 IACAAAPGLR---GPSAFNGAALSTPAKSSSAMKMS-FESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

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BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 9.930e-109
Identity = 160/198 (80.81%), Postives = 177/198 (89.39%), Query Frame = 0

Query:   22 AFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            AF  AA+   A+SSS+MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AFIGFLEL VMKNVE SFPGD T GGNPFG+ WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  181 AFNGAAVATPAKSSSAMKMS-FESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

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BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 319 bits (817), Expect = 2.380e-108
Identity = 164/220 (74.55%), Postives = 187/220 (85.00%), Query Frame = 0

Query:    1 MKFAVISIACAT-GVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            MK A++++A A  G++    PSAF  AALT SA+SSS+MKM+ FESEIG Q P+GFWDPLGL+ DADQ+ F+RLRYVEVK GRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI  FIGFLEL VMKNVE SFPGD T GGNPF + WDAMS +TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    1 MKSAIMAVASAAPGLR---GPSAFNGAALTTSAKSSSAMKMS-FESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

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BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 6.730e-107
Identity = 151/182 (82.97%), Postives = 165/182 (90.66%), Query Frame = 0

Query:   38 MKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AFIGFLEL VMKNVE SFPGD T GGNPFG+ WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct:    1 MKMS-FESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

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BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 305 bits (780), Expect = 3.150e-103
Identity = 148/182 (81.32%), Postives = 162/182 (89.01%), Query Frame = 0

Query:   38 MKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            MKM+ FE EIG Q P+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI  FIGFLEL VMKNVE SFPGD T GGNPF + WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    2 MKMS-FELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 292 bits (747), Expect = 9.360e-98
Identity = 147/197 (74.62%), Postives = 162/197 (82.23%), Query Frame = 0

Query:   23 FQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            F  AAL  SA+SSS+MKM+ FESEIG QPPIGFWDPLGLV DADQERFDRLRYVE+KHGRIAMLAV GH+TQQN RLPGMLS    ++FAD PNG+AA  KIPP+G  QI+  IG  EL V+K VE SFPGD T GGN F + WD MSE+TQ SKR IELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:   17 FNGAALATSAKSSSAMKMS-FESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

[Close]

BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 5.630e-93
Identity = 143/207 (69.08%), Postives = 161/207 (77.78%), Query Frame = 0

Query:   38 MKMTAFESEIGVQPPIGFWDPLGLVTDA-------------------------DQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 219
            MKM+ FESE+G QPP+GF+DPLGL+ D                          DQERFDRLRYVEVKHGRI+MLAVAGHL  QN R PG LS  A ++FADMPNG+AA+ KIPP+GLAQI+AFIGFLEL VMKNVE SFPGDMT GGNPF A WDAMSE+T++SKR IELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:    1 MKMS-FESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCX6_9PHAE	2.780e-119	78.54	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPB_MACPY	1.270e-117	79.00	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5JHT6_9PHAE	4.430e-112	80.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPF_MACPY	2.440e-109	76.64	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
D8LNK6_ECTSI	9.930e-109	80.81	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPC_MACPY	2.380e-108	74.55	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
A0A6H5JDS8_9PHAE	6.730e-107	82.97	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPD_MACPY	3.150e-103	81.32	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPE_MACPY	9.360e-98	74.62	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
A0A6H5KBS3_9PHAE	5.630e-93	69.08	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 45..215 e-value: 7.9E-25 score: 89.7
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 47..199 e-value: 2.0E-31 score: 109.7
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 20..203
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 20..203
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 17..219
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..16
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..16 score: 0.481
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 39..209

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig9442	contig	H-paniculata_contig9442:1403..6257 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig9442.17195.1	mRNA_H-paniculata_contig9442.17195.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig9442 843..6309 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig9442.17195.1 ID=prot_H-paniculata_contig9442.17195.1|Name=mRNA_H-paniculata_contig9442.17195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MKFAVISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQ
PPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLP
GMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDS
FPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEE
LSNQPYIINDLVGASYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln