mRNA_H-paniculata_contig9442.17195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE) HSP 1 Score: 347 bits (890), Expect = 3.580e-116 Identity = 172/219 (78.54%), Postives = 192/219 (87.67%), Query Frame = 2 Query: 53 MKFAVISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
MK A +++ACA AFV PSAF AA+ A+SSS+MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQNVRLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AF+GFLEL VMKNVE SFPGD T GGNPF + WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct: 1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMS-FESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY) HSP 1 Score: 343 bits (879), Expect = 1.610e-114 Identity = 173/219 (79.00%), Postives = 191/219 (87.21%), Query Frame = 2 Query: 53 MKFAVISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
MK AV+++ACA F PSAF AALT SA++ S+MKM+ FESEIG Q P+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AFIGFLEL VMKNVE SFPGD T GGNPFGA WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct: 1 MKSAVMAVACAAA-PGFRGPSAFNGAALTTSAKACSAMKMS-FESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE) HSP 1 Score: 329 bits (843), Expect = 5.240e-109 Identity = 161/199 (80.90%), Postives = 179/199 (89.95%), Query Frame = 2 Query: 113 SAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
SAF AA+ SA+SSS+MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQNVRLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AF+GFLEL VMKNVE SFPGD T GGNPF + WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct: 24 SAFNGAAVATSAKSSSAMKMS-FESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY) HSP 1 Score: 322 bits (824), Expect = 2.790e-106 Identity = 164/214 (76.64%), Postives = 181/214 (84.58%), Query Frame = 2 Query: 68 ISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
I+ A A G++ PSAF AAL+ A+SSS+MKM+ FESEIG Q P+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI FIGFLEL VMKNVE SFPGD GGNPF + WD+MS +TQ SKR IELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct: 2 IACAAAPGLR---GPSAFNGAALSTPAKSSSAMKMS-FESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI) HSP 1 Score: 326 bits (836), Expect = 1.160e-105 Identity = 160/198 (80.81%), Postives = 177/198 (89.39%), Query Frame = 2 Query: 116 AFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
AF AA+ A+SSS+MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AFIGFLEL VMKNVE SFPGD T GGNPFG+ WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct: 181 AFNGAAVATPAKSSSAMKMS-FESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY) HSP 1 Score: 319 bits (818), Expect = 2.680e-105 Identity = 164/220 (74.55%), Postives = 187/220 (85.00%), Query Frame = 2 Query: 53 MKFAVISIACAT-GVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
MK A++++A A G++ PSAF AALT SA+SSS+MKM+ FESEIG Q P+GFWDPLGL+ DADQ+ F+RLRYVEVK GRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI FIGFLEL VMKNVE SFPGD T GGNPF + WDAMS +TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct: 1 MKSAIMAVASAAPGLR---GPSAFNGAALTTSAKSSSAMKMS-FESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE) HSP 1 Score: 314 bits (805), Expect = 7.370e-104 Identity = 151/182 (82.97%), Postives = 165/182 (90.66%), Query Frame = 2 Query: 164 MKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
MKM+ FESEIG QPP+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI AFIGFLEL VMKNVE SFPGD T GGNPFG+ WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct: 1 MKMS-FESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY) HSP 1 Score: 305 bits (781), Expect = 3.270e-100 Identity = 148/182 (81.32%), Postives = 162/182 (89.01%), Query Frame = 2 Query: 164 MKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
MKM+ FE EIG Q P+GFWDPLGL+ DADQERF+RLRYVEVKHGRIAMLA+AGHLTQQN RLPGMLSNSA +SFADMPNG+AAL KIPP GLAQI FIGFLEL VMKNVE SFPGD T GGNPF + WDAMSE+TQ SKR IELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct: 2 MKMS-FELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY) HSP 1 Score: 292 bits (748), Expect = 9.000e-95 Identity = 147/197 (74.62%), Postives = 162/197 (82.23%), Query Frame = 2 Query: 119 FQSAALTQSARSSSSMKMTAFESEIGVQPPIGFWDPLGLVTDADQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
F AAL SA+SSS+MKM+ FESEIG QPPIGFWDPLGLV DADQERFDRLRYVE+KHGRIAMLAV GH+TQQN RLPGMLS ++FAD PNG+AA KIPP+G QI+ IG EL V+K VE SFPGD T GGN F + WD MSE+TQ SKR IELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct: 17 FNGAALATSAKSSSAMKMS-FESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE) HSP 1 Score: 280 bits (716), Expect = 4.990e-90 Identity = 143/207 (69.08%), Postives = 161/207 (77.78%), Query Frame = 2 Query: 164 MKMTAFESEIGVQPPIGFWDPLGLVTDA-------------------------DQERFDRLRYVEVKHGRIAMLAVAGHLTQQNVRLPGMLSNSAGISFADMPNGLAALGKIPPVGLAQILAFIGFLELVVMKNVEDSFPGDMTRGGNPFGAVWDAMSEDTQVSKRGIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 709
MKM+ FESE+G QPP+GF+DPLGL+ D DQERFDRLRYVEVKHGRI+MLAVAGHL QN R PG LS A ++FADMPNG+AA+ KIPP+GLAQI+AFIGFLEL VMKNVE SFPGDMT GGNPF A WDAMSE+T++SKR IELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct: 1 MKMS-FESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9442.17195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9442.17195.1 >prot_H-paniculata_contig9442.17195.1 ID=prot_H-paniculata_contig9442.17195.1|Name=mRNA_H-paniculata_contig9442.17195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp MKFAVISIACATGVQAFVNPSAFQSAALTQSARSSSSMKMTAFESEIGVQback to top mRNA from alignment at H-paniculata_contig9442:843..6309- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9442.17195.1 ID=mRNA_H-paniculata_contig9442.17195.1|Name=mRNA_H-paniculata_contig9442.17195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5467bp|location=Sequence derived from alignment at H-paniculata_contig9442:843..6309- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9442:843..6309- >mRNA_H-paniculata_contig9442.17195.1 ID=mRNA_H-paniculata_contig9442.17195.1|Name=mRNA_H-paniculata_contig9442.17195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig9442:843..6309- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |