mRNA_H-paniculata_contig9433.17188.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9433.17188.1
Unique NamemRNA_H-paniculata_contig9433.17188.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: D8LIE6_ECTSI (Conserved protein of fucose operon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIE6_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 3.460e-70
Identity = 113/164 (68.90%), Postives = 130/164 (79.27%), Query Frame = 1
Query:    1 MGLSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGVLGVGLDDAG 492
            MGL GISP+ISP+LLV LARMGHGD ICFADA+FPSE++               P+ VRADGHE+ PLL+AV+KL PLDTYTEFPVQMMAAV GDELD +IE RF+ AVE+ QP MF+VERVERF FYERARS + VV+TGETAKYGN+IL KGVLGV  + AG
Sbjct:    1 MGLIGISPLISPDLLVTLARMGHGDSICFADANFPSENL--------TSPGKPGPITVRADGHEVAPLLRAVSKLFPLDTYTEFPVQMMAAVPGDELDASIEERFSTAVEAEQPGMFKVERVERFAFYERARSCYAVVSTGETAKYGNIILVKGVLGVSDESAG 156          
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: UPI001B8F97EE (L-fucose mutarotase n=2 Tax=Carboxylicivirga TaxID=1628153 RepID=UPI001B8F97EE)

HSP 1 Score: 161 bits (408), Expect = 4.090e-48
Identity = 83/153 (54.25%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    7 LSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGV 465
            L GISP+ISPELL  LARMGHGD+I FADAHFP ES+                 ++RADG  I  LL A+  L  LD Y   P+ MMA V GD+LDP++E  + EA+    P    +ER+ERF+FYERAR+AF VV TGETAKYGN++L KGV
Sbjct:    2 LKGISPLISPELLAVLARMGHGDEIVFADAHFPGESLNAN--------------VIRADGLHIADLLAAILPLFELDAYVSAPIVMMAPVEGDDLDPSVETAYLEAIHQTNPHAPAIERIERFDFYERARNAFAVVMTGETAKYGNILLKKGV 140          
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: UPI0004789706 (L-fucose mutarotase n=1 Tax=Alkaliflexus imshenetskii TaxID=286730 RepID=UPI0004789706)

HSP 1 Score: 159 bits (402), Expect = 3.440e-47
Identity = 88/157 (56.05%), Postives = 106/157 (67.52%), Query Frame = 1
Query:    7 LSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGVLGVG 477
            L GISPIISP+LL  LARMGHGD+I FADAHFP ES                  ++RADG  I  LL+AV  L  LD+Y   P+ MMAAV GD LDPA+E ++ +AV+ + P++  V+R+ERF FYER RSAF VV TGETAKYGN+IL KGV   G
Sbjct:    2 LKGISPIISPDLLQILARMGHGDEIVFADAHFPGESFNS--------------RILRADGIRIPDLLEAVLPLFELDSYVPNPLIMMAAVEGDVLDPAVEQQYLKAVQISNPNISSVKRIERFAFYERTRSAFAVVMTGETAKYGNIILKKGVTPTG 144          
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: A0A4U2LAJ6_9BACT (D-ribose pyranase n=1 Tax=Puteibacter caeruleilacunae TaxID=2528631 RepID=A0A4U2LAJ6_9BACT)

HSP 1 Score: 158 bits (399), Expect = 9.810e-47
Identity = 84/153 (54.90%), Postives = 104/153 (67.97%), Query Frame = 1
Query:    7 LSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGV 465
            L GISP+ISP+LL  LARMGHGD+I  ADAHFP+ES                  ++RADG +I  LL+A+  L  LD+Y E P+ MM AV GDELDP +E ++ +AVE   P +  VER+ERF FY+RA+SAF VV TGET KYGN+IL KGV
Sbjct:    2 LKGISPLISPKLLETLARMGHGDEIILADAHFPAESFNDN--------------VLRADGIKIPDLLQAILPLFELDSYVENPLIMMQAVEGDELDPEVEKQYMKAVEQTNPQLTTVERIERFSFYDRAKSAFAVVMTGETVKYGNIILKKGV 140          
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: A0A0K8R165_9BACT (D-ribose pyranase n=1 Tax=Bacteroidales bacterium 6E TaxID=1688776 RepID=A0A0K8R165_9BACT)

HSP 1 Score: 157 bits (398), Expect = 1.310e-46
Identity = 85/154 (55.19%), Postives = 103/154 (66.88%), Query Frame = 1
Query:    7 LSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGVL 468
            L GISPIISP LL  LARMGHGD+I  ADAHFP E+                  ++RADG +I  LL+A+ +L  LD+Y   PV MM AV GD+LDP +E  + ++++   P +  VERVERFEFYER RSAF VV TGETAKYGNVIL KGV+
Sbjct:    2 LKGISPIISPALLEILARMGHGDEIVLADAHFPGETFN--------------TRVIRADGLKIPALLEAILQLFELDSYVPHPVAMMDAVPGDQLDPTVEQSYLKSIQLTHPKIQSVERVERFEFYERTRSAFAVVMTGETAKYGNVILKKGVI 141          
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: A0A7K3XDQ0_9BACT (D-ribose pyranase n=1 Tax=Mariniphaga sp. TaxID=1954475 RepID=A0A7K3XDQ0_9BACT)

HSP 1 Score: 157 bits (397), Expect = 1.910e-46
Identity = 83/153 (54.25%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    7 LSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGV 465
            L GISP+ISPELL  LARMGHGD+I  ADAHFP E+                P ++RADG +I  LL A+  L  LD Y   P+ MMAAV GD LDP +E  + +++    PS+  +E+VERF FYERA+SAF VV TGETAKYGN+IL KGV
Sbjct:    2 LKGISPLISPELLSVLARMGHGDEIVLADAHFPGETFN--------------PRVLRADGLKIADLLSAILPLFELDAYAAHPIAMMAAVPGDALDPLVEASYLKSILETNPSVAPIEQVERFAFYERAKSAFAVVMTGETAKYGNIILKKGV 140          
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: A0A350YV71_9BACT (D-ribose pyranase n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=A0A350YV71_9BACT)

HSP 1 Score: 156 bits (395), Expect = 3.730e-46
Identity = 83/154 (53.90%), Postives = 103/154 (66.88%), Query Frame = 1
Query:    7 LSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGVL 468
            L GISPIISP LL  LARMGHGD+I  ADAHFP E+                  ++RADG +I+ LL+A+  L  LD+Y   PV MM AV GD+LDPA+E  + ++++   PS+  VERVERF FY+R RSAF VV TGET KYGN+IL KGV+
Sbjct:    2 LKGISPIISPALLEVLARMGHGDEIVLADAHFPGETFNS--------------RVIRADGLKISSLLEAILPLFELDSYVPHPVAMMDAVPGDQLDPAVEETYLKSIQITHPSIHSVERVERFAFYDRTRSAFAVVMTGETTKYGNIILKKGVI 141          
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: A0A432IQD0_9BACT (D-ribose pyranase n=1 Tax=Flavobacteriia bacterium TaxID=2044941 RepID=A0A432IQD0_9BACT)

HSP 1 Score: 156 bits (394), Expect = 5.290e-46
Identity = 80/153 (52.29%), Postives = 104/153 (67.97%), Query Frame = 1
Query:    7 LSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGV 465
            L GISP+ISP+LL  LARMGHGD+I  ADAHFP E+                  ++RADG +I  LL+A+  L  LD+YT+ P+ MMAAV GD+LDPA+E  + E +    P +  ++R++RFEFY+RA+ AF VV TGETAKYGN+IL KGV
Sbjct:    2 LKGISPVISPDLLSTLARMGHGDEIILADAHFPGETFNAN--------------VLRADGIKIPQLLEAILPLFELDSYTDSPLIMMAAVTGDQLDPAVEASYMEKIHLTNPEVPAIKRIDRFEFYKRAKDAFAVVMTGETAKYGNIILKKGV 140          
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: A0A6C1RYY7_9BACT (D-ribose pyranase n=1 Tax=Marinilabiliales bacterium TaxID=2053303 RepID=A0A6C1RYY7_9BACT)

HSP 1 Score: 155 bits (393), Expect = 7.510e-46
Identity = 83/153 (54.25%), Postives = 100/153 (65.36%), Query Frame = 1
Query:    7 LSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGV 465
            L GISPIISP+LL  LARMGHGD+I  ADAHFP ES+                L+VRADG  I  L++A+  L  LD Y + P+ MM AV GD LDP +E  + + V    P +   ER++RF FYERA+SAF VV TGETAKYGN+ILTKGV
Sbjct:    2 LKGISPIISPQLLEVLARMGHGDEIVLADAHFPGESLNS--------------LVVRADGLRIADLIEAILPLFELDAYVDTPLVMMDAVEGDHLDPGVEASYMDRVRLTNPGVSPPERIDRFAFYERAKSAFAVVMTGETAKYGNIILTKGV 140          
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Match: W7Y912_9BACT (D-ribose pyranase n=5 Tax=Marinilabiliaceae TaxID=558415 RepID=W7Y912_9BACT)

HSP 1 Score: 155 bits (392), Expect = 1.100e-45
Identity = 81/153 (52.94%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    7 LSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGXXXXXXXXXSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPAIEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVILTKGV 465
            L GISP+ISPELL  LARMGHGD+I  ADAHFP ES  G               ++RADG  I  LL+A+  L  LD+Y   P+ MMAAV GDELDP +E  + +A+  + P++  +ER+ RFEFY++AR AF V+ TGETAKYGN++L KGV
Sbjct:    2 LKGISPLISPELLEVLARMGHGDEIILADAHFPGESFNG--------------RVLRADGLRIPDLLEAILPLFELDSYVPAPLTMMAAVEGDELDPTVEEAYLKAIHKSNPNVPPIERIGRFEFYDKARGAFAVLMTGETAKYGNILLKKGV 140          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9433.17188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIE6_ECTSI3.460e-7068.90Conserved protein of fucose operon n=2 Tax=Ectocar... [more]
UPI001B8F97EE4.090e-4854.25L-fucose mutarotase n=2 Tax=Carboxylicivirga TaxID... [more]
UPI00047897063.440e-4756.05L-fucose mutarotase n=1 Tax=Alkaliflexus imshenets... [more]
A0A4U2LAJ6_9BACT9.810e-4754.90D-ribose pyranase n=1 Tax=Puteibacter caeruleilacu... [more]
A0A0K8R165_9BACT1.310e-4655.19D-ribose pyranase n=1 Tax=Bacteroidales bacterium ... [more]
A0A7K3XDQ0_9BACT1.910e-4654.25D-ribose pyranase n=1 Tax=Mariniphaga sp. TaxID=19... [more]
A0A350YV71_9BACT3.730e-4653.90D-ribose pyranase n=1 Tax=Prolixibacteraceae bacte... [more]
A0A432IQD0_9BACT5.290e-4652.29D-ribose pyranase n=1 Tax=Flavobacteriia bacterium... [more]
A0A6C1RYY7_9BACT7.510e-4654.25D-ribose pyranase n=1 Tax=Marinilabiliales bacteri... [more]
W7Y912_9BACT1.100e-4552.94D-ribose pyranase n=5 Tax=Marinilabiliaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9433contigH-paniculata_contig9433:4981..5472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue2.5e-54
Seed eggNOG ortholog2880.D8LIE6
Preferred nameFUOM
KEGG rclassRC00563
KEGG koko:K02431
KEGG ReactionR10764
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006004,GO:0007275,GO:0007399,GO:0007610,GO:0007617,GO:0007618,GO:0008150,GO:0008152,GO:0009987,GO:0010721,GO:0016853,GO:0016854,GO:0016857,GO:0019098,GO:0019318,GO:0019953,GO:0022008,GO:0022414,GO:0030154,GO:0030246,GO:0032501,GO:0032502,GO:0032504,GO:0036065,GO:0036094,GO:0042806,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048029,GO:0048519,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051239,GO:0051241,GO:0051704,GO:0051960,GO:0051961,GO:0060180,GO:0060284,GO:0065007,GO:0070085,GO:0071704,GO:2000026
EggNOG free text desc.Fucose mutarotase
EggNOG OGs2RZR7@2759,COG4154@1
Ec32 ortholog descriptionD-ribose pyranase RbsD/L-fucose mutarotase FucU
Ec32 orthologEc-18_003960.1
EC5.1.3.29
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size492
Cds size492
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.6266537-CDS-H-paniculata_contig9433:4980..54721622931173.6266537-CDS-H-paniculata_contig9433:4980..5472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9433 4981..5472 -
1691481623.692644-CDS-H-paniculata_contig9433:4980..54721691481623.692644-CDS-H-paniculata_contig9433:4980..5472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9433 4981..5472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9433.17188.1prot_H-paniculata_contig9433.17188.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9433 4981..5472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9433.17188.1

>prot_H-paniculata_contig9433.17188.1 ID=prot_H-paniculata_contig9433.17188.1|Name=mRNA_H-paniculata_contig9433.17188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MGLSGISPIISPELLVALARMGHGDKICFADAHFPSESIGGGGSSNKNNS
NSNLPLLVRADGHEITPLLKAVAKLIPLDTYTEFPVQMMAAVVGDELDPA
IEVRFAEAVESAQPSMFRVERVERFEFYERARSAFVVVATGETAKYGNVI
LTKGVLGVGLDDAG
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mRNA from alignment at H-paniculata_contig9433:4981..5472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9433.17188.1 ID=mRNA_H-paniculata_contig9433.17188.1|Name=mRNA_H-paniculata_contig9433.17188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at H-paniculata_contig9433:4981..5472- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTTGAGCGGCATCTCCCCCATCATCTCGCCAGAATTGTTGGTCGC CCTTGCACGCATGGGCCACGGCGATAAAATATGCTTCGCGGACGCTCATT TCCCCTCTGAGAGCATTGGAGGCGGGGGCAGTAGCAACAAAAACAACAGC AACAGCAACCTGCCCCTCCTCGTACGAGCTGACGGTCATGAGATCACACC GTTGCTCAAAGCCGTGGCGAAACTGATCCCTCTCGACACATACACGGAGT TCCCCGTGCAAATGATGGCGGCGGTGGTCGGGGACGAGCTCGACCCAGCG ATCGAAGTACGGTTTGCGGAGGCAGTGGAATCGGCGCAGCCGAGCATGTT TAGGGTGGAACGGGTGGAGAGGTTCGAATTTTACGAGCGCGCTCGGTCAG CGTTCGTCGTGGTTGCTACTGGGGAGACTGCCAAGTACGGAAACGTGATT TTGACCAAGGGGGTTCTAGGGGTCGGACTGGACGACGCCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig9433:4981..5472-

>mRNA_H-paniculata_contig9433.17188.1 ID=mRNA_H-paniculata_contig9433.17188.1|Name=mRNA_H-paniculata_contig9433.17188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig9433:4981..5472- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTTGAGCGGCATCTCCCCCATCATCTCGCCAGAATTGTTGGTCGC
CCTTGCACGCATGGGCCACGGCGATAAAATATGCTTCGCGGACGCTCATT
TCCCCTCTGAGAGCATTGGAGGCGGGGGCAGTAGCAACAAAAACAACAGC
AACAGCAACCTGCCCCTCCTCGTACGAGCTGACGGTCATGAGATCACACC
GTTGCTCAAAGCCGTGGCGAAACTGATCCCTCTCGACACATACACGGAGT
TCCCCGTGCAAATGATGGCGGCGGTGGTCGGGGACGAGCTCGACCCAGCG
ATCGAAGTACGGTTTGCGGAGGCAGTGGAATCGGCGCAGCCGAGCATGTT
TAGGGTGGAACGGGTGGAGAGGTTCGAATTTTACGAGCGCGCTCGGTCAG
CGTTCGTCGTGGTTGCTACTGGGGAGACTGCCAAGTACGGAAACGTGATT
TTGACCAAGGGGGTTCTAGGGGTCGGACTGGACGACGCCGGCATGGGCTT
GAGCGGCATCTCCCCCATCATCTCGCCAGAATTGTTGGTCGCCCTTGCAC
GCATGGGCCACGGCGATAAAATATGCTTCGCGGACGCTCATTTCCCCTCT
GAGAGCATTGGAGGCGGGGGCAGTAGCAACAAAAACAACAGCAACAGCAA
CCTGCCCCTCCTCGTACGAGCTGACGGTCATGAGATCACACCGTTGCTCA
AAGCCGTGGCGAAACTGATCCCTCTCGACACATACACGGAGTTCCCCGTG
CAAATGATGGCGGCGGTGGTCGGGGACGAGCTCGACCCAGCGATCGAAGT
ACGGTTTGCGGAGGCAGTGGAATCGGCGCAGCCGAGCATGTTTAGGGTGG
AACGGGTGGAGAGGTTCGAATTTTACGAGCGCGCTCGGTCAGCGTTCGTC
GTGGTTGCTACTGGGGAGACTGCCAAGTACGGAAACGTGATTTTGACCAA
GGGGGTTCTAGGGGTCGGACTGGACGACGCCGGC
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