Homology
BLAST of mRNA_H-paniculata_contig9431.17186.1 vs. uniprot
Match:
D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI)
HSP 1 Score: 133 bits (334), Expect = 4.540e-31
Identity = 87/202 (43.07%), Postives = 122/202 (60.40%), Query Frame = 3
Query: 366 VDLRPYRPFHSPRRHPTGGRRPY-TTASPIVDMFQEVVGDIKRVAQELAESPHNSPRVPPHELVESSTSVTLYVDLPGCKKQDVDAQISEDAGSNTLKITAIRKKSYYGSESSAAAKQSEXQPGE------------------QTATEENPSSSREKEAALSPTHKEEAFELSFRIGEGIDVSGIRGSMEDGVLKLVIPKVA 914
VD +RPF RH RP+ ++A P++D+FQ+V+G+IK+VA EL++ P R PP+E++E+ + TL VDLPGCKK+DVDAQ+SED+G+ TL ITA+RKK + + G A ++ P E +LS + EE+F+LSFR+GE IDVS IRG +EDGVL LV+PK+A
Sbjct: 52 VDTGAFRPF----RHVQPRGRPHVSSAGPLMDVFQDVMGEIKKVACELSD-PTTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDSGTKTLTITAVRKKPRQADGDARSPSSPPDTSGSXXXXXXXXXXXXXXXXAPHEAAKDTP------EPSLS-SFSEESFKLSFRVGEDIDVSVIRGGLEDGVLTLVLPKLA 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9431.17186.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 4.54e-31 / Id = 43.07 Sequence D7G5P0_ECTSI
Match Name E-value Identity Description
D7G5P0_ECTSI 4.540e-31 43.07 SHSP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide Ec32 ortholog description HSP20-like chaperone Ec32 ortholog Ec-12_008570.1 Exons 2 Model size 1866 Cds size 846 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9431.17186.1
>prot_H-paniculata_contig9431.17186.1 ID=prot_H-paniculata_contig9431.17186.1|Name=mRNA_H-paniculata_contig9431.17186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MVYPSMYLAAMTMLLSASYWPEAESHIVYHVPRGDGGLYNQMWPTAFLHP back to top mRNA from alignment at H-paniculata_contig9431:4694..8812+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9431.17186.1 ID=mRNA_H-paniculata_contig9431.17186.1|Name=mRNA_H-paniculata_contig9431.17186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4119bp|location=Sequence derived from alignment at H-paniculata_contig9431:4694..8812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)TAAGAAAGCCAGCGAATAGATCCACGTGGAACGTTGCATCTCTGTACCCG
TGTCTCCAGCCGTCTCTCGTCTACCTCTACCTAGGTTTCCACCTCCCCCA
TCACTTCTCTCCGGTTCCATCACTACAAATACCCACGGGGATTCAATTAC
TACGCGACGATTACGTTCCGCAACGCGACAATAGCAGAGGCAACTACAGT
CGTCCTATC ATGGTTTATCCTTCAATGTATCTAGCCGCGATGACGATGCT
CCTTTCGGCATCGTATTGGCCGGAAGCCGAATCCCACATTGTTTACCATG
TGCCGCGTGGGGACGGCGGTCTCTACAACCAAATGTGGCCTACAGCATTC
CTTCACCCCCGTGATGTGGACCTTCGACCATATCGGCCTTTCCACTCGCC
GCGTCGCCATCCAACTGGCGGTCGCCGCCCTTACACTACAGCCTCTCCGA
TCGTTGACATGTTTCAGGAGGTAGTCGGCGATATCAAGAGAG GTGAGTTT
TGGGTTATGCACATATTGGTGGTGTCGGAGATGACTTATGATTGGTAACC
CTTACTTTCCCGGAGTGCAAGCTAAAAAAGTGCCACGGCTTCGGTGCTCT
GGTCTCAATCAACACTCTAGCTAAATACCTTGCTCGACGCTCAATGTTTG
ATTGAGCCTGTAAGTCTATATCTTTTTTTTACTGTTGTGACACCCATAAC
TCGATCTACCGGAATTACGATCAGTAGACTTCCTCGCTGCCTGTTGTTAG
ACCAAGAGCAATTCATGCGCAAGGTTCAGTGAAAAGTCTATAGTGACTGT
ATACTACCTCGAGTTTCAGTGTTTGAGGTTACACCGGTGCTGTACTGTGT
ATTGTGATTTAGTCCTCTGTATTCAACTAAGTGACATTCGAACCAAAACT
CCGAAACAGGCTCGTATTCTATGTGAGATCATAATCGAAATGCAGTTACT
CTTTTTTTTTCGAGTACGAAAGAGTAGGTCAATGCAACACTCAGTAAATC
ACTGTTTAAAGTGTTTATTTGCATCTCTGTGCAAGCAGTGAGAAGAAGTC
ACGTACGACAAAGTCATTATGCAAGAGATGATAACTCCTGGTGTATATTA
CCGCACACCTTCGACGCTCTGTCAGCCTTCGTAACGCATGCCACGTCGGT
GTGTGTGTGCCAATTCCACTCCAGACATGTGCAGTCAATTGTGTACGTAC
ATCACGAGCAGACAGACAGTACAGCCAGCAGTACAGATACTCTAGGTATA
GCATCACCGTCCGTAATGAAGCCCTCCACCCATGATCAGATAGGTAATGA
ATCAGCGTGCGTGGTAGATTCGAGAGATGCTGTGTAAAACATTGTGTATC
ATGTTGTCAGGAGGTAGTGCCTCCCAGACTACGTACCTTCTTCTCTTTCT
GGGATGTAGACACTAGTGTGCTGGTGGTACCGCATAAATACACAATATGC
TACTACGCCGCAGAAGAGCGCCCCTCCTTGTCCACCCAACAGCAATTTCC
AATCCTAGATTTGGATACACAATCCTGGACGACATTCTCCCAAAACAAAA
TCACGTGAGCTTTAAAAACTGACCGATCGAAATTGAGCTTGCCACCGCTC
GATAGAACAATGTGTGTACTACAGTCTGCCCGCTGTACTGATGCTGACCC
CATGCCGAGCACACGACGTTACAGTTGCTGCAACCGACCCTTGACCTAGA
TATATGATTTTCATAAATCGATGCCTTTTCGCCTCTATTGTAGCATAGCA
ATCTGATTGCCTTAATTTCTATCTTTTACTGTTATACGTCGCGATCTCAC
TGTTTTCTTTGTCATATGTTGTCGAAATACGGGTCTGATCTCAACCCGAC
TAAGGCAACCGTGTCCATCGACATCCAGCCCCTTCCAAGAAGCATCCCAC
ACACATGCTTCTGTGACGCGGGACTGTCGGATATTGCACATCGAAGTACG
TACCAATGCAGGCACCCAGGTATAGGGGGGCTGTACACCGTAAAAACTTA
ATACGCGGCAAAATTACCCGCGGAACGGAGAAGACTTCTCCCAATACGCA
CAACTCATCCAGATTACTGCAGTAACTTCCAACATTAACTAGCGAGTTGG
TTTGCTGCTTGCACCCTACAACAAAGTCCACGTAACTTGTAAACTAAATT
TATGAGTTGCATGTCAAGGAATTAGTTAGTAGCGGCTTCCGCCCTCAGAC
CGACGGGTCCCAATCAATCGATAAGTTAATACGTCAAAATATGTGTACCC
CCAAACAAGGATAGTGTGGTTCTTTCGCATAGCCCCTTTTGGCCTGGCGT
CAAGTGTTTTGACATCCACCCACTCCCCGATAAGCAATACCAGCGCCTAT
GCCATCCAGTTGAAATTGTCGAGGATTTTTGGTAGACAATTATTTATGCC
TTTGACACCCGAAATCGGCCGCTGACTCATCTAATGTGTAACATTGCTGT
GATTCCTGTCACCTCTGCTCTAACACCTGGCGCGCTTCGTGTATATATGG
TCCCTCGGGTGCAAGAAAGGCTGGCACGACGACGACGTCAAGTCCATATT
CGTAGTGCTCAGATGCCTTTGAGCGACACACTTGAAAGGGTACATTTTGC
CGAAACACACTGCTTCGTGAACCTCTTGCCTTTGATTTGCTTCATTTGTT
TGATTTTTTTCAATCACCCCCTAGTTCCCCCCCGCCGTCCGTCCTTACCC
TCTCGCGCGCCCTCTCTTCCCTCCCTCGTTCTCTGCGCCCTGCAGTTGCC
CAAGAGCTGGCAGAATCACCGCACAACTCGCCACGTGTACCACCCCACGA
ACTTGTCGAGTCCTCGACCTCCGTGACCCTCTATGTAGACCTCCCGGGTT
GCAAGAAGCAAGACGTGGATGCCCAGATATCGGAAGACGCAGGCTCGAAT
ACTCTCAAGATCACCGCGATCAGAAAGAAGTCGTACTACGGAAGCGAGAG
CTCTGCAGCCGCGAAGCAATCTGAGGAACAACCCGGGGAACAGACCGCTA
CCGAGGAAAACCCTAGCTCTTCACGGGAAAAAGAGGCGGCTTTGTCACCG
ACGCACAAAGAGGAAGCGTTCGAGCTATCTTTCAGGATCGGGGAAGGAAT
TGACGTGTCAGGTATCCGCGGCTCTATGGAGGACGGCGTACTGAAACTAG
TTATTCCGAAAGTAGCGCCGCAACCCCCCGCGGAGCCTATCGACATACCT
ATTGATCCGCCTTCTGGGAACCAGTCGTTCGATGAGGGCGAAGAGGATGG
GACGGGGGGCGGGATGTCATCTGGGGCTTCCGACAACACCCACATCAGTC
TTTCATGA CTAGGACGGGATTGGTGATTTGTATGTTGTAATCGCGGAGAG
ATCAGCCTAAAAGATTGTAGTTTAGGTAAATGCGCGTTCCGCGTCTACCC
CGAGCATCTATGTCCTTGGGATAGTCCACGAAAAGGGACAGTTTTGTGTC
TCCGACGTTATCTCCAACCAGTGCTTTTCCAGGTCTAGTGATGGGAGTTT
TAGGGTCTTGCTGTAGAAGTCTTACCGTTGTATAGGAGAAAGGTCATGGA
AAGGGAAATCGGCATGTATATGGGGAGTACCTAGTATAGGGGGAAGCACT
ACACGAGGTAATAGTCGATTTCTCAGAGTTTCAGTGGAACGTATCCTTTC
ATCACCCTCCTGTGAGGTGACGCTTCACATGTATCGAAACACTACCATAT
GTACACATCTGTGCTTATGGCACCCGATTGTACTCGACTGCATGCTTCCC
ACACCGTCCAATCAGGGTGGCACGAGGTTTGAGATCAAAATTCAATTCTT
TATAGAATATCCCATTTTCGGAGAAGTCGAACGCACGTATTTGTTGTCGA
TTTTCGGTGGAAAATGCAAGCATCAAGAGAGCAATCGTTCAGTTGCCTCC
AGCTTTTTGTTCGGAAAAGCGAACCAGTTGAAAGTCACGCAGCTATGAGG
ATTCGAGTTCACAAGATACGCCCTCTCTCTCTGTTTGCGCAGCAAAGCGT
AGCGTGTGTGTACTGTGATCTAGGAGTGCCCGCTAGCGTCTGATACGATT
GCAGTCGATTTTTACCACAGCATCGGAGAAAAATCCACATGAAGCGCATC
TCGCTGTCCAAAATACGCG back to top Coding sequence (CDS) from alignment at H-paniculata_contig9431:4694..8812+
>mRNA_H-paniculata_contig9431.17186.1 ID=mRNA_H-paniculata_contig9431.17186.1|Name=mRNA_H-paniculata_contig9431.17186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig9431:4694..8812+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top