mRNA_H-paniculata_contig9431.17186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9431.17186.1
Unique NamemRNA_H-paniculata_contig9431.17186.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9431.17186.1 vs. uniprot
Match: D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 4.540e-31
Identity = 87/202 (43.07%), Postives = 122/202 (60.40%), Query Frame = 3 
Query:  366 VDLRPYRPFHSPRRHPTGGRRPY-TTASPIVDMFQEVVGDIKRVAQELAESPHNSPRVPPHELVESSTSVTLYVDLPGCKKQDVDAQISEDAGSNTLKITAIRKKSYYGSESSAAAKQSEXQPGE------------------QTATEENPSSSREKEAALSPTHKEEAFELSFRIGEGIDVSGIRGSMEDGVLKLVIPKVA 914
            VD   +RPF    RH     RP+ ++A P++D+FQ+V+G+IK+VA EL++ P    R PP+E++E+  + TL VDLPGCKK+DVDAQ+SED+G+ TL ITA+RKK       + +        G                     A ++ P      E +LS +  EE+F+LSFR+GE IDVS IRG +EDGVL LV+PK+A
Sbjct:   52 VDTGAFRPF----RHVQPRGRPHVSSAGPLMDVFQDVMGEIKKVACELSD-PTTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDSGTKTLTITAVRKKPRQADGDARSPSSPPDTSGSXXXXXXXXXXXXXXXXAPHEAAKDTP------EPSLS-SFSEESFKLSFRVGEDIDVSVIRGGLEDGVLTLVLPKLA 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9431.17186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5P0_ECTSI4.540e-3143.07SHSP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9431contigH-paniculata_contig9431:4694..8812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-12_008570.1
Exons2
Model size1866
Cds size846
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9431.17186.1prot_H-paniculata_contig9431.17186.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9431 4903..8001 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.3672433-UTR-H-paniculata_contig9431:4693..49021622931173.3672433-UTR-H-paniculata_contig9431:4693..4902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9431 4694..4902 +
1691481623.510106-UTR-H-paniculata_contig9431:4693..49021691481623.510106-UTR-H-paniculata_contig9431:4693..4902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9431 4694..4902 +
1622931173.416601-UTR-H-paniculata_contig9431:8001..88121622931173.416601-UTR-H-paniculata_contig9431:8001..8812Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9431 8002..8812 +
1691481623.5526507-UTR-H-paniculata_contig9431:8001..88121691481623.5526507-UTR-H-paniculata_contig9431:8001..8812Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9431 8002..8812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.3898597-CDS-H-paniculata_contig9431:4902..51851622931173.3898597-CDS-H-paniculata_contig9431:4902..5185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9431 4903..5185 +
1691481623.5217907-CDS-H-paniculata_contig9431:4902..51851691481623.5217907-CDS-H-paniculata_contig9431:4902..5185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9431 4903..5185 +
1622931173.403454-CDS-H-paniculata_contig9431:7438..80011622931173.403454-CDS-H-paniculata_contig9431:7438..8001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9431 7439..8001 +
1691481623.5339587-CDS-H-paniculata_contig9431:7438..80011691481623.5339587-CDS-H-paniculata_contig9431:7438..8001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9431 7439..8001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9431.17186.1

>prot_H-paniculata_contig9431.17186.1 ID=prot_H-paniculata_contig9431.17186.1|Name=mRNA_H-paniculata_contig9431.17186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MVYPSMYLAAMTMLLSASYWPEAESHIVYHVPRGDGGLYNQMWPTAFLHP
RDVDLRPYRPFHSPRRHPTGGRRPYTTASPIVDMFQEVVGDIKRVAQELA
ESPHNSPRVPPHELVESSTSVTLYVDLPGCKKQDVDAQISEDAGSNTLKI
TAIRKKSYYGSESSAAAKQSEEQPGEQTATEENPSSSREKEAALSPTHKE
EAFELSFRIGEGIDVSGIRGSMEDGVLKLVIPKVAPQPPAEPIDIPIDPP
SGNQSFDEGEEDGTGGGMSSGASDNTHISLS*
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mRNA from alignment at H-paniculata_contig9431:4694..8812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9431.17186.1 ID=mRNA_H-paniculata_contig9431.17186.1|Name=mRNA_H-paniculata_contig9431.17186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4119bp|location=Sequence derived from alignment at H-paniculata_contig9431:4694..8812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAGAAAGCCAGCGAATAGATCCACGTGGAACGTTGCATCTCTGTACCCG
TGTCTCCAGCCGTCTCTCGTCTACCTCTACCTAGGTTTCCACCTCCCCCA
TCACTTCTCTCCGGTTCCATCACTACAAATACCCACGGGGATTCAATTAC
TACGCGACGATTACGTTCCGCAACGCGACAATAGCAGAGGCAACTACAGT
CGTCCTATCATGGTTTATCCTTCAATGTATCTAGCCGCGATGACGATGCT
CCTTTCGGCATCGTATTGGCCGGAAGCCGAATCCCACATTGTTTACCATG
TGCCGCGTGGGGACGGCGGTCTCTACAACCAAATGTGGCCTACAGCATTC
CTTCACCCCCGTGATGTGGACCTTCGACCATATCGGCCTTTCCACTCGCC
GCGTCGCCATCCAACTGGCGGTCGCCGCCCTTACACTACAGCCTCTCCGA
TCGTTGACATGTTTCAGGAGGTAGTCGGCGATATCAAGAGAGGTGAGTTT
TGGGTTATGCACATATTGGTGGTGTCGGAGATGACTTATGATTGGTAACC
CTTACTTTCCCGGAGTGCAAGCTAAAAAAGTGCCACGGCTTCGGTGCTCT
GGTCTCAATCAACACTCTAGCTAAATACCTTGCTCGACGCTCAATGTTTG
ATTGAGCCTGTAAGTCTATATCTTTTTTTTACTGTTGTGACACCCATAAC
TCGATCTACCGGAATTACGATCAGTAGACTTCCTCGCTGCCTGTTGTTAG
ACCAAGAGCAATTCATGCGCAAGGTTCAGTGAAAAGTCTATAGTGACTGT
ATACTACCTCGAGTTTCAGTGTTTGAGGTTACACCGGTGCTGTACTGTGT
ATTGTGATTTAGTCCTCTGTATTCAACTAAGTGACATTCGAACCAAAACT
CCGAAACAGGCTCGTATTCTATGTGAGATCATAATCGAAATGCAGTTACT
CTTTTTTTTTCGAGTACGAAAGAGTAGGTCAATGCAACACTCAGTAAATC
ACTGTTTAAAGTGTTTATTTGCATCTCTGTGCAAGCAGTGAGAAGAAGTC
ACGTACGACAAAGTCATTATGCAAGAGATGATAACTCCTGGTGTATATTA
CCGCACACCTTCGACGCTCTGTCAGCCTTCGTAACGCATGCCACGTCGGT
GTGTGTGTGCCAATTCCACTCCAGACATGTGCAGTCAATTGTGTACGTAC
ATCACGAGCAGACAGACAGTACAGCCAGCAGTACAGATACTCTAGGTATA
GCATCACCGTCCGTAATGAAGCCCTCCACCCATGATCAGATAGGTAATGA
ATCAGCGTGCGTGGTAGATTCGAGAGATGCTGTGTAAAACATTGTGTATC
ATGTTGTCAGGAGGTAGTGCCTCCCAGACTACGTACCTTCTTCTCTTTCT
GGGATGTAGACACTAGTGTGCTGGTGGTACCGCATAAATACACAATATGC
TACTACGCCGCAGAAGAGCGCCCCTCCTTGTCCACCCAACAGCAATTTCC
AATCCTAGATTTGGATACACAATCCTGGACGACATTCTCCCAAAACAAAA
TCACGTGAGCTTTAAAAACTGACCGATCGAAATTGAGCTTGCCACCGCTC
GATAGAACAATGTGTGTACTACAGTCTGCCCGCTGTACTGATGCTGACCC
CATGCCGAGCACACGACGTTACAGTTGCTGCAACCGACCCTTGACCTAGA
TATATGATTTTCATAAATCGATGCCTTTTCGCCTCTATTGTAGCATAGCA
ATCTGATTGCCTTAATTTCTATCTTTTACTGTTATACGTCGCGATCTCAC
TGTTTTCTTTGTCATATGTTGTCGAAATACGGGTCTGATCTCAACCCGAC
TAAGGCAACCGTGTCCATCGACATCCAGCCCCTTCCAAGAAGCATCCCAC
ACACATGCTTCTGTGACGCGGGACTGTCGGATATTGCACATCGAAGTACG
TACCAATGCAGGCACCCAGGTATAGGGGGGCTGTACACCGTAAAAACTTA
ATACGCGGCAAAATTACCCGCGGAACGGAGAAGACTTCTCCCAATACGCA
CAACTCATCCAGATTACTGCAGTAACTTCCAACATTAACTAGCGAGTTGG
TTTGCTGCTTGCACCCTACAACAAAGTCCACGTAACTTGTAAACTAAATT
TATGAGTTGCATGTCAAGGAATTAGTTAGTAGCGGCTTCCGCCCTCAGAC
CGACGGGTCCCAATCAATCGATAAGTTAATACGTCAAAATATGTGTACCC
CCAAACAAGGATAGTGTGGTTCTTTCGCATAGCCCCTTTTGGCCTGGCGT
CAAGTGTTTTGACATCCACCCACTCCCCGATAAGCAATACCAGCGCCTAT
GCCATCCAGTTGAAATTGTCGAGGATTTTTGGTAGACAATTATTTATGCC
TTTGACACCCGAAATCGGCCGCTGACTCATCTAATGTGTAACATTGCTGT
GATTCCTGTCACCTCTGCTCTAACACCTGGCGCGCTTCGTGTATATATGG
TCCCTCGGGTGCAAGAAAGGCTGGCACGACGACGACGTCAAGTCCATATT
CGTAGTGCTCAGATGCCTTTGAGCGACACACTTGAAAGGGTACATTTTGC
CGAAACACACTGCTTCGTGAACCTCTTGCCTTTGATTTGCTTCATTTGTT
TGATTTTTTTCAATCACCCCCTAGTTCCCCCCCGCCGTCCGTCCTTACCC
TCTCGCGCGCCCTCTCTTCCCTCCCTCGTTCTCTGCGCCCTGCAGTTGCC
CAAGAGCTGGCAGAATCACCGCACAACTCGCCACGTGTACCACCCCACGA
ACTTGTCGAGTCCTCGACCTCCGTGACCCTCTATGTAGACCTCCCGGGTT
GCAAGAAGCAAGACGTGGATGCCCAGATATCGGAAGACGCAGGCTCGAAT
ACTCTCAAGATCACCGCGATCAGAAAGAAGTCGTACTACGGAAGCGAGAG
CTCTGCAGCCGCGAAGCAATCTGAGGAACAACCCGGGGAACAGACCGCTA
CCGAGGAAAACCCTAGCTCTTCACGGGAAAAAGAGGCGGCTTTGTCACCG
ACGCACAAAGAGGAAGCGTTCGAGCTATCTTTCAGGATCGGGGAAGGAAT
TGACGTGTCAGGTATCCGCGGCTCTATGGAGGACGGCGTACTGAAACTAG
TTATTCCGAAAGTAGCGCCGCAACCCCCCGCGGAGCCTATCGACATACCT
ATTGATCCGCCTTCTGGGAACCAGTCGTTCGATGAGGGCGAAGAGGATGG
GACGGGGGGCGGGATGTCATCTGGGGCTTCCGACAACACCCACATCAGTC
TTTCATGACTAGGACGGGATTGGTGATTTGTATGTTGTAATCGCGGAGAG
ATCAGCCTAAAAGATTGTAGTTTAGGTAAATGCGCGTTCCGCGTCTACCC
CGAGCATCTATGTCCTTGGGATAGTCCACGAAAAGGGACAGTTTTGTGTC
TCCGACGTTATCTCCAACCAGTGCTTTTCCAGGTCTAGTGATGGGAGTTT
TAGGGTCTTGCTGTAGAAGTCTTACCGTTGTATAGGAGAAAGGTCATGGA
AAGGGAAATCGGCATGTATATGGGGAGTACCTAGTATAGGGGGAAGCACT
ACACGAGGTAATAGTCGATTTCTCAGAGTTTCAGTGGAACGTATCCTTTC
ATCACCCTCCTGTGAGGTGACGCTTCACATGTATCGAAACACTACCATAT
GTACACATCTGTGCTTATGGCACCCGATTGTACTCGACTGCATGCTTCCC
ACACCGTCCAATCAGGGTGGCACGAGGTTTGAGATCAAAATTCAATTCTT
TATAGAATATCCCATTTTCGGAGAAGTCGAACGCACGTATTTGTTGTCGA
TTTTCGGTGGAAAATGCAAGCATCAAGAGAGCAATCGTTCAGTTGCCTCC
AGCTTTTTGTTCGGAAAAGCGAACCAGTTGAAAGTCACGCAGCTATGAGG
ATTCGAGTTCACAAGATACGCCCTCTCTCTCTGTTTGCGCAGCAAAGCGT
AGCGTGTGTGTACTGTGATCTAGGAGTGCCCGCTAGCGTCTGATACGATT
GCAGTCGATTTTTACCACAGCATCGGAGAAAAATCCACATGAAGCGCATC
TCGCTGTCCAAAATACGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig9431:4694..8812+

>mRNA_H-paniculata_contig9431.17186.1 ID=mRNA_H-paniculata_contig9431.17186.1|Name=mRNA_H-paniculata_contig9431.17186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig9431:4694..8812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTATCCTTCAATGTATCTAGCCGCGATGACGATGCTCCTTTCGGC
ATCGTATTGGCCGGAAGCCGAATCCCACATTGTTTACCATGTGCCGCGTG
GGGACGGCGGTCTCTACAACCAAATGTGGCCTACAGCATTCCTTCACCCC
CGTGATGTGGACCTTCGACCATATCGGCCTTTCCACTCGCCGCGTCGCCA
TCCAACTGGCGGTCGCCGCCCTTACACTACAGCCTCTCCGATCGTTGACA
TGTTTCAGGAGGTAGTCGGCGATATCAAGAGAGATGGTTTATCCTTCAAT
GTATCTAGCCGCGATGACGATGCTCCTTTCGGCATCGTATTGGCCGGAAG
CCGAATCCCACATTGTTTACCATGTGCCGCGTGGGGACGGCGGTCTCTAC
AACCAAATGTGGCCTACAGCATTCCTTCACCCCCGTGATGTGGACCTTCG
ACCATATCGGCCTTTCCACTCGCCGCGTCGCCATCCAACTGGCGGTCGCC
GCCCTTACACTACAGCCTCTCCGATCGTTGACATGTTTCAGGAGGTAGTC
GGCGATATCAAGAGAGTTGCCCAAGAGCTGGCAGAATCACCGCACAACTC
GCCACGTGTACCACCCCACGAACTTGTCGAGTCCTCGACCTCCGTGACCC
TCTATGTAGACCTCCCGGGTTGCAAGAAGCAAGACGTGGATGCCCAGATA
TCGGAAGACGCAGGCTCGAATACTCTCAAGATCACCGCGATCAGAAAGAA
GTCGTACTACGGAAGCGAGAGCTCTGCAGCCGCGAAGCAATCTGAGGAAC
AACCCGGGGAACAGACCGCTACCGAGGAAAACCCTAGCTCTTCACGGGAA
AAAGAGGCGGCTTTGTCACCGACGCACAAAGAGGAAGCGTTCGAGCTATC
TTTCAGGATCGGGGAAGGAATTGACGTGTCAGGTATCCGCGGCTCTATGG
AGGACGGCGTACTGAAACTAGTTATTCCGAAAGTAGCGCCGCAACCCCCC
GCGGAGCCTATCGACATACCTATTGATCCGCCTTCTGGGAACCAGTCGTT
CGATGAGGGCGAAGAGGATGGGACGGGGGGCGGGATGTCATCTGGGGCTT
CCGACAACACCCACATCAGTCTTTCATGATTGCCCAAGAGCTGGCAGAAT
CACCGCACAACTCGCCACGTGTACCACCCCACGAACTTGTCGAGTCCTCG
ACCTCCGTGACCCTCTATGTAGACCTCCCGGGTTGCAAGAAGCAAGACGT
GGATGCCCAGATATCGGAAGACGCAGGCTCGAATACTCTCAAGATCACCG
CGATCAGAAAGAAGTCGTACTACGGAAGCGAGAGCTCTGCAGCCGCGAAG
CAATCTGAGGAACAACCCGGGGAACAGACCGCTACCGAGGAAAACCCTAG
CTCTTCACGGGAAAAAGAGGCGGCTTTGTCACCGACGCACAAAGAGGAAG
CGTTCGAGCTATCTTTCAGGATCGGGGAAGGAATTGACGTGTCAGGTATC
CGCGGCTCTATGGAGGACGGCGTACTGAAACTAGTTATTCCGAAAGTAGC
GCCGCAACCCCCCGCGGAGCCTATCGACATACCTATTGATCCGCCTTCTG
GGAACCAGTCGTTCGATGAGGGCGAAGAGGATGGGACGGGGGGCGGGATG
TCATCTGGGGCTTCCGACAACACCCACATCAGTCTTTCATGA
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