Homology
BLAST of mRNA_H-paniculata_contig9415.17175.1 vs. uniprot
Match:
A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE)
HSP 1 Score: 105 bits (261), Expect = 7.650e-26
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 3
Query: 189 LPDNELEALTRLHVEDIDCSLTVRPTRTAFDLTFFEEISYSFEIVSAQLTRPPKRPPDS----CRKKCGDKSLETCSCGEKGNGPGRPKQL 449
+PDNELEA LHVEDIDCSL VRPTRTA DL FF E+SYSFEIV+A+L RPPKRPPD+ CR KC + C C + P R ++L
Sbjct: 1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPG--KACPCNR--DSPARSRRL 87
BLAST of mRNA_H-paniculata_contig9415.17175.1 vs. uniprot
Match:
D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)
HSP 1 Score: 105 bits (261), Expect = 2.760e-23
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 3
Query: 189 LPDNELEALTRLHVEDIDCSLTVRPTRTAFDLTFFEEISYSFEIVSAQLTRPPKRPPDS----CRKKCGDKSLETCSCGEKGNGPGRPKQL 449
+PDNELEA LHVEDIDCSL VRPTRTA DL FF E+SYSFEIV+A+L RPPKRPPD+ CR KC + C C + P R ++L
Sbjct: 1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPG--KACPCNH--DSPARSRRL 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9415.17175.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 7.65e-26 / Id = 60.44 Expect = 2.76e-23 / Id = 60.44 Sequence A0A6H5JRV5_9PHAE D8LC33_ECTSI
Match Name E-value Identity Description
A0A6H5JRV5_9PHAE 7.650e-26 60.44 Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more] D8LC33_ECTSI 2.760e-23 60.44 RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal anchor Exons 4 Model size 560 Cds size 534 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9415.17175.1
>prot_H-paniculata_contig9415.17175.1 ID=prot_H-paniculata_contig9415.17175.1|Name=mRNA_H-paniculata_contig9415.17175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
MMEVIEKTQRKVVVRQKRHGVLYGVGACFLLALLFYLLDGKHPKSSLYCT back to top mRNA from alignment at H-paniculata_contig9415:4808..9510+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9415.17175.1 ID=mRNA_H-paniculata_contig9415.17175.1|Name=mRNA_H-paniculata_contig9415.17175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4703bp|location=Sequence derived from alignment at H-paniculata_contig9415:4808..9510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)GGGTATGATAACGGTATGATGAGGGT ATGATGGAGGTGATCGAGAAGACA
CAACGAAAG GTGAGTGTAGAAGTGTAGCTATGCTAATAGTAACCGGCTGA
GTGAGTACAGTAGACATCATGTAAAAGATTCTCCATAGTCTTGCAGAGAC
AGGTCTGGCCGGTATATCAACGCTAGCACGACCCACCTGTATATACACCA
GATGAGTGTCTTCTGTCGAAGATGAAGAACCTCAACACACAATACATGTG
GCTCACTATCGTTTCTACCAGGTCCACCGCAAACAGAAGATGTACGTCTA
CGATGGACACAGTGATATCACAACATCCAGGGCTGTTTCCCGCTTTTATA
CGTTCCAATGTACAAACAGAGTGCAGGCCTCAAGTGTACAGCAGCAGTCT
GCTCGCAGGCTGTTGTATACATCATCTACGAGTATGATAGGGCTTGCAGC
TTCGTGCCCCTTGTTCGGCATTTGACTACTATAGCAACATCTATATTTCT
CTCCTTTTAGACATGCCACGGGTTTTAACTGTTTTGCGTTAGACATTTCC
CGCTGCTTCTCTGCCTAATAGCATCCATCTGGAGACTATCACCTTGGCTA
CTCTCAGTTGCTGCAAGTGGGAGTCATCAATCAAACCCTCTCAACATAAA
GTTGGTTAATGTCGAGGTGGCCTATCTCTGTTCGTTGAAATAGATATTTT
GCGACAATGGACGAAAATAGAATTTTAAAATGAAATTGAAAGTAAGTTCA
ATTTGTACAAAAAACACAAACAACCTACACACAGCATTACAGGCACCGCG
GAAATAATTATCGCTATGTTCCCAATGACTATCTCAACAGACGGCTACAT
TCAGAAAAGGCTGAAGAGAGAGTCATTCCACACACGCAGTAGCAGACGAT
AGGCCATGCTCAGCTGCACCTTTCACGCTTTGTTTGACGAGAATTCTGTT
CGTACCGCGGGAGTTACAACTACAGTAGTGGGTGGTCCTCAACAAGGCGA
GTTAGCGACAAGCCGAAATCGGTCGCAGTATTGCGACACTCGCCTTATCA
CGATTTGTACCTCAATAAGGCAAGGTCCCCTTATTTTGAATGGTTTTTTT
TTTGCAATCCATGTCCCTTATTTCTCGTTACAGTCCGTACAGGCAGTAGT
GTTTTTTGCAAATGCTCAGGTGTTGACGTAGTGCCACCACTGCACTGTGC
TATTCTGTACAACACTCCAAAACAGGGAAATACAGTACGCTACGTGGGAG
GTACCATACGGTATGTTGTTCGGGACCTCTACTACCGTATCCTGCTTGAC
CTCACTGTTCACAAAGCGATATTATCCTCTCTGCTCTCACACCCAACCCT
CCTCAGAAGAGAAAATGCGTTGTTGACCGGGAAACACCCCTGGGGAAAGG
CATTGTACTTCCTTAGCCTACGGTACTATACTCCTCAGTGCCGTTCGGAA
CAGAGTGCGACGTGAATTCCAAACGCCAGCCTGCTTCTTACAGCATGACT
CATGGGCACTGAGGAATGAGTGTCATCCGCGCCCTGCGTAATCATTGCAT
CCAGCGTCGTTACCGCTGGACTATGCATGCATTTCCAGAGAACTAAAATA
TTCTGATAGCTGAAAGTACGGGGGCGGCGGAGGATGCCAGCTGTTCTGGG
GATTACATTTCTCCTCGTTGTCAATGATCTCCATCTCCCAATCAGACTTG
GCTTCGGTACCCAAAGCCCCACACCCCCCCTCTTTCATGCTCTCTAGTCT
ATCTACAATGTCCTGTTGCGCTTCGAGCTTCACAGCCTCTTCGCCTTGCA
AATACCAGCCGAAAGTGCCGTGGCAGTTGTGATCCGTCAAGTGAGGCACT
GCTGGTGTGAGCTTGAAGGGGTGTTGACGAGCCTTGCCTGTAGCACACGG
CGTGCTGTCTCCTCTAGCGGTGTTTGAAACTTGAACAAGGCTACTTGCTG
ATTGTACTGTACAGTACAGTGTTGGTTGTGGTTTGCTTCCGTTCTGTAAT
GGGTCTGGTCGGGGGTGCTCATCCTGATATATATATATATATATATGTAG
TATATTTGTCGCGAATGCTCGAGGTAGTCGTAGTCGTTATGATCTTGTGT
GTGTGTGTGTGTTTTTTTTAGTTTCCTTGTGTATTGTGTGTGTGCGTATG
TTTAATACGCTTGATTCATGAGGGAAATCCTTTGATGTGCCAAGAGGTCG
TTTTCTAAGCGTCGCTATTTTTTTTCCCCTTGTTTTCACTTTTTTTCCAT
CCTCCTATTTTCTTGAAAAATATCTTCAGAAAACAAAAAAAGGCGATCCT
TTTCCTTACAGTGTTCCCTAATAAACACCCTAATTCATTTAGTTTTTTTC
CGATGCTTCTGACATAATATCAGTTTGCCATTACCGTGGAACGAAAAAAA
AAAAAATGGAGTGAAGGAATAAAATAAAAATAAGATGAAAAAAAAACATG
CCCACGTTCAGAATAGCCCTTTTGTTGTCCTGATGGGTGTATGTGTGTAT
GTGTGTATGTGTGTTTGTGTGAGTGCGTGCGTGATCTTCTTGTTGTGAAA
GGAAACCGTGTGCTGCACGTGTTATGTTGTGGAACTAACTCTCTTGCGTT
TTGTCCATTTTCTGGGCCTGGTCGCCTGTTGAAAGATTCAATCCGATTAT
TGCCCTAATTATTTTCCGCCGTATTTGTGCCTGTGTATGTTGCCTCTTTG
TTTTCATGGACAGGTTGTTGTCCGACAAAAGAGGCATGGGGTCCTCTACG
GGGTTGGGGCATGTTTCCTGCTGGCCCTCCTGTTTTACCTGCTCGACGGC
AAGCATCCAAAG GTGCGCAAGCCCGTCTGTCAGTCACAGTGTATTGTAGT
TTCTAAAAAGGTCTAGATTATATATATATATATATGTTGGACCCCGCACA
AAATTTTGGGAAAAAATCCCAAATTCCCATATTCTCAAACGTGGAAAGCC
TAAGGTGCTGGAATTTTTTTGAACACAACAAATATGAGGCTCATATTTAC
CATATATATTTTTCTCTTGATTTTTTTTTTGTGATCGGAACGGTTTTTTT
TACGCGTTCATCTGCTTCCCTTTTTCCTCCTTTTTTTTTCATTTTTTTTT
CATTTTTGTGATCTTGAGCGATGAAAAATAAATACTCAATATTTGGAGAA
ATAAATAAATAAATGCCATGCGGACGGCCCAGCAGAGCGCCATCACACTG
CAGTGGTTGCAAAGACCCACCCGATCGGAACCTTTCATTTTTCTGTGCGG
CTTGGTTTTGTGGTTCGGTTTCTTTCTTTCGCCCCTCGGTGGTGAAAGTT
TTTAACTCGTTGTGTATTTCTTGCGAGGCCAGCTCGTACGAAATGAAGCT
GCAGGTCATTCCTTTTTTTTCTCCCCTGCTTGGAGCACAAATATTGTATC
GCAGCTAGCCTTTATGCCCCCCCCCCCCCCGCACACACACCAATAATTCG
AAAGTCCTCGTGCTTGACGAGTAGGTACATTTCGCTTCTCATCGTCATGG
TGCCATTAGGACCATCGAGTATAGTACCGTGATAGAAAAGTAATGGCCTT
GAAAAGTATCCTAGTCTTGGACCGTCGAGACGAAACCGACGGAGTCGAGT
GCTGTACGTTGATTGATCAACTCAGAACGTACGGTGTGAATCCCGCCGCG
TATTTCGTAGGTGTTGTAGGCCGTCACGGGAATTACTTTTTCATTTTCGC
TCCCACCCCCCTTTGTCTCGCACCGGGGGGCGATCTGTACAGCCGAGGCT
TTTAGGGCCTCCGCACCCGGTGTTGATTAGGGGCTAATTCGGTAAGTAAG
AAAGGAGGTTGGTTGGTCAATGTCATGCAGGTATTTGTGTTATCCGAGTC
TTCGCGTGTCGCTCATGTGACGTCCAGGGCTCTACACACACTGCACCAGG
CTAGACTACACACGCTATCGAGCTAACGAGTGGCACATTTTTGTTTATTC
TGCCTGGAAAATGGACAAGTGTAGTCGTCCTCGCGCTGCTGCCGTGGTTC
GAGGTGTTTGCTGAGCCCCCCCCGTTGTCTGGTTATCATTATTTTACTGT
AACGATGTTGGACGGCGAGACAGTCGTCTTTGTACTGTACCAGGCATGCC
GTGCTGCCCGACAACGAGCTGGAGGCCTTGACCCGTCTGCATGTGGAGGA
TATCGATTGCAGCCTGACCGTCCGGCCCACGAGGACGGCCTTCGACCTCA
CCTTTTTCGAAGAG GTGTGTGTGTGCTGGGCTGAGCTATGCTGTATATTT
CGTTACTCGGCGACTAAACACTGGGTATATTTCGTTTTAAGATCTTGTGC
TCACGAACGTAGACTACAAAACCCCAGCATGCAATAAATAAATATATAAA
AGTTTTCACGGGTGGAAATGAATTTCGAAGACAGAAAACGAGTCGACTGG
TAACCCCCGCCCTCAACCCCGCCGTCCGCCTGTGTACTCCAGATATCCTA
CAGTTTCGAGATAGTATCGGCACAGCTCACGAGGCCTCCCAAACGCCCCC
CTGACTCCTGCCGCAAGAAATGCGGTGACAAATCATTAGAGACGTGTTCT
TGCGGGGAGAAAGGGAATGGCCCTGGAAGGCCGAAGCAGCTGAATCGGCG
AAATTTCCAGGGGCTCTACGAGAGCGGAGAGGCAGGTGGAGAAGGAAGCA
GCGGGGCACCGAAGCGACGAGATGCAAGGGCTCTCGAGGAGGAGGAAGAG
GAG back to top Coding sequence (CDS) from alignment at H-paniculata_contig9415:4808..9510+
>mRNA_H-paniculata_contig9415.17175.1 ID=mRNA_H-paniculata_contig9415.17175.1|Name=mRNA_H-paniculata_contig9415.17175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig9415:4808..9510+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top