mRNA_H-paniculata_contig9415.17175.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9415.17175.1
Unique NamemRNA_H-paniculata_contig9415.17175.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9415.17175.1 vs. uniprot
Match: A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 7.650e-26
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 3 
Query:  189 LPDNELEALTRLHVEDIDCSLTVRPTRTAFDLTFFEEISYSFEIVSAQLTRPPKRPPDS----CRKKCGDKSLETCSCGEKGNGPGRPKQL 449
            +PDNELEA   LHVEDIDCSL VRPTRTA DL FF E+SYSFEIV+A+L RPPKRPPD+    CR KC     + C C    + P R ++L
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPG--KACPCNR--DSPARSRRL 87
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BLAST of mRNA_H-paniculata_contig9415.17175.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.760e-23
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 3 
Query:  189 LPDNELEALTRLHVEDIDCSLTVRPTRTAFDLTFFEEISYSFEIVSAQLTRPPKRPPDS----CRKKCGDKSLETCSCGEKGNGPGRPKQL 449
            +PDNELEA   LHVEDIDCSL VRPTRTA DL FF E+SYSFEIV+A+L RPPKRPPD+    CR KC     + C C    + P R ++L
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPG--KACPCNH--DSPARSRRL 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9415.17175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRV5_9PHAE7.650e-2660.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LC33_ECTSI2.760e-2360.44RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9415contigH-paniculata_contig9415:4808..9510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size560
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9415.17175.1prot_H-paniculata_contig9415.17175.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9415 4834..9510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.0004063-UTR-H-paniculata_contig9415:4807..48331622931171.0004063-UTR-H-paniculata_contig9415:4807..4833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9415 4808..4833 +
1691481622.4159465-UTR-H-paniculata_contig9415:4807..48331691481622.4159465-UTR-H-paniculata_contig9415:4807..4833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9415 4808..4833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.0234811-CDS-H-paniculata_contig9415:4833..48661622931171.0234811-CDS-H-paniculata_contig9415:4833..4866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9415 4834..4866 +
1691481622.4249885-CDS-H-paniculata_contig9415:4833..48661691481622.4249885-CDS-H-paniculata_contig9415:4833..4866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9415 4834..4866 +
1622931171.0604205-CDS-H-paniculata_contig9415:7520..76191622931171.0604205-CDS-H-paniculata_contig9415:7520..7619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9415 7521..7619 +
1691481622.4338026-CDS-H-paniculata_contig9415:7520..76191691481622.4338026-CDS-H-paniculata_contig9415:7520..7619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9415 7521..7619 +
1622931171.0798008-CDS-H-paniculata_contig9415:8880..90211622931171.0798008-CDS-H-paniculata_contig9415:8880..9021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9415 8881..9021 +
1691481622.4448655-CDS-H-paniculata_contig9415:8880..90211691481622.4448655-CDS-H-paniculata_contig9415:8880..9021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9415 8881..9021 +
1622931171.0962114-CDS-H-paniculata_contig9415:9249..95101622931171.0962114-CDS-H-paniculata_contig9415:9249..9510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9415 9250..9510 +
1691481622.4593408-CDS-H-paniculata_contig9415:9249..95101691481622.4593408-CDS-H-paniculata_contig9415:9249..9510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9415 9250..9510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9415.17175.1

>prot_H-paniculata_contig9415.17175.1 ID=prot_H-paniculata_contig9415.17175.1|Name=mRNA_H-paniculata_contig9415.17175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
MMEVIEKTQRKVVVRQKRHGVLYGVGACFLLALLFYLLDGKHPKSSLYCT
RHAVLPDNELEALTRLHVEDIDCSLTVRPTRTAFDLTFFEEISYSFEIVS
AQLTRPPKRPPDSCRKKCGDKSLETCSCGEKGNGPGRPKQLNRRNFQGLY
ESGEAGGEGSSGAPKRRDARALEEEEEE
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mRNA from alignment at H-paniculata_contig9415:4808..9510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9415.17175.1 ID=mRNA_H-paniculata_contig9415.17175.1|Name=mRNA_H-paniculata_contig9415.17175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4703bp|location=Sequence derived from alignment at H-paniculata_contig9415:4808..9510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTATGATAACGGTATGATGAGGGTATGATGGAGGTGATCGAGAAGACA
CAACGAAAGGTGAGTGTAGAAGTGTAGCTATGCTAATAGTAACCGGCTGA
GTGAGTACAGTAGACATCATGTAAAAGATTCTCCATAGTCTTGCAGAGAC
AGGTCTGGCCGGTATATCAACGCTAGCACGACCCACCTGTATATACACCA
GATGAGTGTCTTCTGTCGAAGATGAAGAACCTCAACACACAATACATGTG
GCTCACTATCGTTTCTACCAGGTCCACCGCAAACAGAAGATGTACGTCTA
CGATGGACACAGTGATATCACAACATCCAGGGCTGTTTCCCGCTTTTATA
CGTTCCAATGTACAAACAGAGTGCAGGCCTCAAGTGTACAGCAGCAGTCT
GCTCGCAGGCTGTTGTATACATCATCTACGAGTATGATAGGGCTTGCAGC
TTCGTGCCCCTTGTTCGGCATTTGACTACTATAGCAACATCTATATTTCT
CTCCTTTTAGACATGCCACGGGTTTTAACTGTTTTGCGTTAGACATTTCC
CGCTGCTTCTCTGCCTAATAGCATCCATCTGGAGACTATCACCTTGGCTA
CTCTCAGTTGCTGCAAGTGGGAGTCATCAATCAAACCCTCTCAACATAAA
GTTGGTTAATGTCGAGGTGGCCTATCTCTGTTCGTTGAAATAGATATTTT
GCGACAATGGACGAAAATAGAATTTTAAAATGAAATTGAAAGTAAGTTCA
ATTTGTACAAAAAACACAAACAACCTACACACAGCATTACAGGCACCGCG
GAAATAATTATCGCTATGTTCCCAATGACTATCTCAACAGACGGCTACAT
TCAGAAAAGGCTGAAGAGAGAGTCATTCCACACACGCAGTAGCAGACGAT
AGGCCATGCTCAGCTGCACCTTTCACGCTTTGTTTGACGAGAATTCTGTT
CGTACCGCGGGAGTTACAACTACAGTAGTGGGTGGTCCTCAACAAGGCGA
GTTAGCGACAAGCCGAAATCGGTCGCAGTATTGCGACACTCGCCTTATCA
CGATTTGTACCTCAATAAGGCAAGGTCCCCTTATTTTGAATGGTTTTTTT
TTTGCAATCCATGTCCCTTATTTCTCGTTACAGTCCGTACAGGCAGTAGT
GTTTTTTGCAAATGCTCAGGTGTTGACGTAGTGCCACCACTGCACTGTGC
TATTCTGTACAACACTCCAAAACAGGGAAATACAGTACGCTACGTGGGAG
GTACCATACGGTATGTTGTTCGGGACCTCTACTACCGTATCCTGCTTGAC
CTCACTGTTCACAAAGCGATATTATCCTCTCTGCTCTCACACCCAACCCT
CCTCAGAAGAGAAAATGCGTTGTTGACCGGGAAACACCCCTGGGGAAAGG
CATTGTACTTCCTTAGCCTACGGTACTATACTCCTCAGTGCCGTTCGGAA
CAGAGTGCGACGTGAATTCCAAACGCCAGCCTGCTTCTTACAGCATGACT
CATGGGCACTGAGGAATGAGTGTCATCCGCGCCCTGCGTAATCATTGCAT
CCAGCGTCGTTACCGCTGGACTATGCATGCATTTCCAGAGAACTAAAATA
TTCTGATAGCTGAAAGTACGGGGGCGGCGGAGGATGCCAGCTGTTCTGGG
GATTACATTTCTCCTCGTTGTCAATGATCTCCATCTCCCAATCAGACTTG
GCTTCGGTACCCAAAGCCCCACACCCCCCCTCTTTCATGCTCTCTAGTCT
ATCTACAATGTCCTGTTGCGCTTCGAGCTTCACAGCCTCTTCGCCTTGCA
AATACCAGCCGAAAGTGCCGTGGCAGTTGTGATCCGTCAAGTGAGGCACT
GCTGGTGTGAGCTTGAAGGGGTGTTGACGAGCCTTGCCTGTAGCACACGG
CGTGCTGTCTCCTCTAGCGGTGTTTGAAACTTGAACAAGGCTACTTGCTG
ATTGTACTGTACAGTACAGTGTTGGTTGTGGTTTGCTTCCGTTCTGTAAT
GGGTCTGGTCGGGGGTGCTCATCCTGATATATATATATATATATATGTAG
TATATTTGTCGCGAATGCTCGAGGTAGTCGTAGTCGTTATGATCTTGTGT
GTGTGTGTGTGTTTTTTTTAGTTTCCTTGTGTATTGTGTGTGTGCGTATG
TTTAATACGCTTGATTCATGAGGGAAATCCTTTGATGTGCCAAGAGGTCG
TTTTCTAAGCGTCGCTATTTTTTTTCCCCTTGTTTTCACTTTTTTTCCAT
CCTCCTATTTTCTTGAAAAATATCTTCAGAAAACAAAAAAAGGCGATCCT
TTTCCTTACAGTGTTCCCTAATAAACACCCTAATTCATTTAGTTTTTTTC
CGATGCTTCTGACATAATATCAGTTTGCCATTACCGTGGAACGAAAAAAA
AAAAAATGGAGTGAAGGAATAAAATAAAAATAAGATGAAAAAAAAACATG
CCCACGTTCAGAATAGCCCTTTTGTTGTCCTGATGGGTGTATGTGTGTAT
GTGTGTATGTGTGTTTGTGTGAGTGCGTGCGTGATCTTCTTGTTGTGAAA
GGAAACCGTGTGCTGCACGTGTTATGTTGTGGAACTAACTCTCTTGCGTT
TTGTCCATTTTCTGGGCCTGGTCGCCTGTTGAAAGATTCAATCCGATTAT
TGCCCTAATTATTTTCCGCCGTATTTGTGCCTGTGTATGTTGCCTCTTTG
TTTTCATGGACAGGTTGTTGTCCGACAAAAGAGGCATGGGGTCCTCTACG
GGGTTGGGGCATGTTTCCTGCTGGCCCTCCTGTTTTACCTGCTCGACGGC
AAGCATCCAAAGGTGCGCAAGCCCGTCTGTCAGTCACAGTGTATTGTAGT
TTCTAAAAAGGTCTAGATTATATATATATATATATGTTGGACCCCGCACA
AAATTTTGGGAAAAAATCCCAAATTCCCATATTCTCAAACGTGGAAAGCC
TAAGGTGCTGGAATTTTTTTGAACACAACAAATATGAGGCTCATATTTAC
CATATATATTTTTCTCTTGATTTTTTTTTTGTGATCGGAACGGTTTTTTT
TACGCGTTCATCTGCTTCCCTTTTTCCTCCTTTTTTTTTCATTTTTTTTT
CATTTTTGTGATCTTGAGCGATGAAAAATAAATACTCAATATTTGGAGAA
ATAAATAAATAAATGCCATGCGGACGGCCCAGCAGAGCGCCATCACACTG
CAGTGGTTGCAAAGACCCACCCGATCGGAACCTTTCATTTTTCTGTGCGG
CTTGGTTTTGTGGTTCGGTTTCTTTCTTTCGCCCCTCGGTGGTGAAAGTT
TTTAACTCGTTGTGTATTTCTTGCGAGGCCAGCTCGTACGAAATGAAGCT
GCAGGTCATTCCTTTTTTTTCTCCCCTGCTTGGAGCACAAATATTGTATC
GCAGCTAGCCTTTATGCCCCCCCCCCCCCCGCACACACACCAATAATTCG
AAAGTCCTCGTGCTTGACGAGTAGGTACATTTCGCTTCTCATCGTCATGG
TGCCATTAGGACCATCGAGTATAGTACCGTGATAGAAAAGTAATGGCCTT
GAAAAGTATCCTAGTCTTGGACCGTCGAGACGAAACCGACGGAGTCGAGT
GCTGTACGTTGATTGATCAACTCAGAACGTACGGTGTGAATCCCGCCGCG
TATTTCGTAGGTGTTGTAGGCCGTCACGGGAATTACTTTTTCATTTTCGC
TCCCACCCCCCTTTGTCTCGCACCGGGGGGCGATCTGTACAGCCGAGGCT
TTTAGGGCCTCCGCACCCGGTGTTGATTAGGGGCTAATTCGGTAAGTAAG
AAAGGAGGTTGGTTGGTCAATGTCATGCAGGTATTTGTGTTATCCGAGTC
TTCGCGTGTCGCTCATGTGACGTCCAGGGCTCTACACACACTGCACCAGG
CTAGACTACACACGCTATCGAGCTAACGAGTGGCACATTTTTGTTTATTC
TGCCTGGAAAATGGACAAGTGTAGTCGTCCTCGCGCTGCTGCCGTGGTTC
GAGGTGTTTGCTGAGCCCCCCCCGTTGTCTGGTTATCATTATTTTACTGT
AACGATGTTGGACGGCGAGACAGTCGTCTTTGTACTGTACCAGGCATGCC
GTGCTGCCCGACAACGAGCTGGAGGCCTTGACCCGTCTGCATGTGGAGGA
TATCGATTGCAGCCTGACCGTCCGGCCCACGAGGACGGCCTTCGACCTCA
CCTTTTTCGAAGAGGTGTGTGTGTGCTGGGCTGAGCTATGCTGTATATTT
CGTTACTCGGCGACTAAACACTGGGTATATTTCGTTTTAAGATCTTGTGC
TCACGAACGTAGACTACAAAACCCCAGCATGCAATAAATAAATATATAAA
AGTTTTCACGGGTGGAAATGAATTTCGAAGACAGAAAACGAGTCGACTGG
TAACCCCCGCCCTCAACCCCGCCGTCCGCCTGTGTACTCCAGATATCCTA
CAGTTTCGAGATAGTATCGGCACAGCTCACGAGGCCTCCCAAACGCCCCC
CTGACTCCTGCCGCAAGAAATGCGGTGACAAATCATTAGAGACGTGTTCT
TGCGGGGAGAAAGGGAATGGCCCTGGAAGGCCGAAGCAGCTGAATCGGCG
AAATTTCCAGGGGCTCTACGAGAGCGGAGAGGCAGGTGGAGAAGGAAGCA
GCGGGGCACCGAAGCGACGAGATGCAAGGGCTCTCGAGGAGGAGGAAGAG
GAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9415:4808..9510+

>mRNA_H-paniculata_contig9415.17175.1 ID=mRNA_H-paniculata_contig9415.17175.1|Name=mRNA_H-paniculata_contig9415.17175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig9415:4808..9510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGAGGTGATCGAGAAGACACAACGAAAGATGATGGAGGTGATCGA
GAAGACACAACGAAAGGTTGTTGTCCGACAAAAGAGGCATGGGGTCCTCT
ACGGGGTTGGGGCATGTTTCCTGCTGGCCCTCCTGTTTTACCTGCTCGAC
GGCAAGCATCCAAAGGTTGTTGTCCGACAAAAGAGGCATGGGGTCCTCTA
CGGGGTTGGGGCATGTTTCCTGCTGGCCCTCCTGTTTTACCTGCTCGACG
GCAAGCATCCAAAGTCGTCTTTGTACTGTACCAGGCATGCCGTGCTGCCC
GACAACGAGCTGGAGGCCTTGACCCGTCTGCATGTGGAGGATATCGATTG
CAGCCTGACCGTCCGGCCCACGAGGACGGCCTTCGACCTCACCTTTTTCG
AAGAGTCGTCTTTGTACTGTACCAGGCATGCCGTGCTGCCCGACAACGAG
CTGGAGGCCTTGACCCGTCTGCATGTGGAGGATATCGATTGCAGCCTGAC
CGTCCGGCCCACGAGGACGGCCTTCGACCTCACCTTTTTCGAAGAGATAT
CCTACAGTTTCGAGATAGTATCGGCACAGCTCACGAGGCCTCCCAAACGC
CCCCCTGACTCCTGCCGCAAGAAATGCGGTGACAAATCATTAGAGACGTG
TTCTTGCGGGGAGAAAGGGAATGGCCCTGGAAGGCCGAAGCAGCTGAATC
GGCGAAATTTCCAGGGGCTCTACGAGAGCGGAGAGGCAGGTGGAGAAGGA
AGCAGCGGGGCACCGAAGCGACGAGATGCAAGGGCTCTCGAGGAGGAGGA
AGAGGAGATATCCTACAGTTTCGAGATAGTATCGGCACAGCTCACGAGGC
CTCCCAAACGCCCCCCTGACTCCTGCCGCAAGAAATGCGGTGACAAATCA
TTAGAGACGTGTTCTTGCGGGGAGAAAGGGAATGGCCCTGGAAGGCCGAA
GCAGCTGAATCGGCGAAATTTCCAGGGGCTCTACGAGAGCGGAGAGGCAG
GTGGAGAAGGAAGCAGCGGGGCACCGAAGCGACGAGATGCAAGGGCTCTC
GAGGAGGAGGAAGAGGAG
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