prot_H-paniculata_contig9398.17159.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9398.17159.1
Unique Nameprot_H-paniculata_contig9398.17159.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length398
Homology
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BLAST of mRNA_H-paniculata_contig9398.17159.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 4.680e-20
Identity = 69/157 (43.95%), Postives = 80/157 (50.96%), Query Frame = 0 
Query:   14 VGTAAEVRWRH------EDGGEEGYLHQSVAVMARGRHRFRLLDCRGIMRGDVWYYKVVICPDLCPPAPLRAPVPRLLRDMTSGDKNGSMGSMNCRKREYGCVGGGSGEEGRRAAKEAGRRGSCRHWVMSIPRFVVAINSPDALAARAGHLLREARE 164
            VGT AEVR  H       DGG E      +A+MARGRHRFRL++  G  RG V Y+KVVICPD CP    R PVPR  R+    D+ G                       RR  ++ G      HW M++PRF V  NSP  LAARA  LLRE RE
Sbjct:  159 VGTTAEVRSGHGGSAEDADGGGEXXXXGGLAMMARGRHRFRLVEDLGWRRG-VLYWKVVICPDHCP-GTFRPPVPRAFREFPGTDRRG-----------------------RRRRRDGGN-----HWPMAVPRFAVVANSPAVLAARAASLLREQRE 285
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BLAST of mRNA_H-paniculata_contig9398.17159.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.070e-15
Identity = 61/138 (44.20%), Postives = 71/138 (51.45%), Query Frame = 0 
Query:   27 GGEEGYLHQSVAVMARGRHRFRLLDCRGIMRGDVWYYKVVICPDLCPPAPLRAPVPRLLRDMTSGDKNGSMGSMNCRKREYGCVGGGSGEEGRRAAKEAGRRGSCRHWVMSIPRFVVAINSPDALAARAGHLLREARE 164
            GG EG     +A+MARGRHRFRL++  G  RG V Y+KVVIC D CP    + PVPR  R+                         G+G  GRR      RR    HW M++PRF V  NSP  LAARA  LLRE RE
Sbjct:  237 GGGEGGDGGGLAMMARGRHRFRLVEDLGWRRG-VRYWKVVICSDHCP-GTFQPPVPRAFREFP-----------------------GTGRRGRR------RRDGGNHWTMAVPRFAVVANSPAVLAARAASLLREQRE 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9398.17159.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLP2_ECTSI4.680e-2043.95Protein cereblon n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KP54_9PHAE1.070e-1544.20CULT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.58.1480coord: 341..387
e-value: 8.2E-11
score: 43.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9398contigH-paniculata_contig9398:2797..7549 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9398.17159.1mRNA_H-paniculata_contig9398.17159.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9398 2689..8327 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9398.17159.1 ID=prot_H-paniculata_contig9398.17159.1|Name=mRNA_H-paniculata_contig9398.17159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=398bp
MSWNHDGSASIVGVGTAAEVRWRHEDGGEEGYLHQSVAVMARGRHRFRLL
DCRGIMRGDVWYYKVVICPDLCPPAPLRAPVPRLLRDMTSGDKNGSMGSM
NCRKREYGCVGGGSGEEGRRAAKEAGRRGSCRHWVMSIPRFVVAINSPDA
LAARAGHLLREARESPRLQPSATNAHPAAVAVGPLAMVNADEVSALGSAT
NGTEEGGERRRSSRATMERFLAALERGFYRSDGGNGDAGTGAGAERREIT
GGGSGAPVARAVAPRATVGEVAAGRAGHGSVVVNEVLEERGGGGVDGTGA
RSNERNETSYPAVGGDMEGDEEGWRHGGVGTGYGGGEEGNEGQVGRRKPD
PTHFSFWLAANLPLDDSARQELLDMDSVVSRLRLDVSGRSRVVAFRL*
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