Homology
BLAST of mRNA_H-paniculata_contig9398.17159.1 vs. uniprot
Match:
D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI)
HSP 1 Score: 108 bits (271), Expect = 4.140e-21
Identity = 76/178 (42.70%), Postives = 88/178 (49.44%), Query Frame = 1
Query: 88 HLGVVNGMSWNHDGS-ASIVGVGTAAEVRWRH------EDGGEEGYLHQSVAVMARGRHRFRLLDCRGIMRGDVWYYKVVICPDLCPPAPLRAPVPRLLRDMTSGDKNGSMGSMNCRKREYGCVGGGSGEEGRRAAKEAGRRGSCRHWVMSIPRFVVAINSPDALAARAGHLLREARE 600
HLGVVN + G VGT AEVR H DGG E +A+MARGRHRFRL++ G RG V Y+KVVICPD CP R PVPR R+ D+ G RR ++ G HW M++PRF V NSP LAARA LLRE RE
Sbjct: 138 HLGVVNRLDSRRGGPHVGASPVGTTAEVRSGHGGSAEDADGGGEXXXXGGLAMMARGRHRFRLVEDLGWRRG-VLYWKVVICPDHCP-GTFRPPVPRAFREFPGTDRRG-----------------------RRRRRDGGN-----HWPMAVPRFAVVANSPAVLAARAASLLREQRE 285
BLAST of mRNA_H-paniculata_contig9398.17159.1 vs. uniprot
Match:
A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE)
HSP 1 Score: 91.3 bits (225), Expect = 1.940e-15
Identity = 74/178 (41.57%), Postives = 85/178 (47.75%), Query Frame = 1
Query: 88 HLGVVNGM-SWNHDGSASIVGVGTAAEVR----WRHED--GGEEGYLHQSVAVMARGRHRFRLLDCRGIMRGDVWYYKVVICPDLCPPAPLRAPVPRLLRDMTSGDKNGSMGSMNCRKREYGCVGGGSGEEGRRAAKEAGRRGSCRHWVMSIPRFVVAINSPDALAARAGHLLREARE 600
HLGVVN + S AEVR ED GG EG +A+MARGRHRFRL++ G RG V Y+KVVIC D CP + PVPR R+ G+G GRR RR HW M++PRF V NSP LAARA LLRE RE
Sbjct: 197 HLGVVNRLDSRXXXXXXXXXXXXXXAEVRSGXXXSAEDAAGGGEGGDGGGLAMMARGRHRFRLVEDLGWRRG-VRYWKVVICSDHCP-GTFQPPVPRAFREFP-----------------------GTGRRGRR------RRDGGNHWTMAVPRFAVVANSPAVLAARAASLLREQRE 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9398.17159.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.14e-21 / Id = 42.70 Expect = 1.94e-15 / Id = 41.57 Sequence D8LLP2_ECTSI A0A6H5KP54_9PHAE
Match Name E-value Identity Description
D8LLP2_ECTSI 4.140e-21 42.70 Protein cereblon n=1 Tax=Ectocarpus siliculosus Ta... [more] A0A6H5KP54_9PHAE 1.940e-15 41.57 CULT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 107.1 Seed ortholog evalue 2e-20 Seed eggNOG ortholog 2880.D8LLP2 Preferred name CRBN KEGG ko ko:K11793 Hectar predicted targeting category other localisation GOs GO:0000151,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009987,GO:0010498,GO:0016567,GO:0019538,GO:0019941,GO:0030163,GO:0031333,GO:0031461,GO:0031464,GO:0031974,GO:0031981,GO:0032092,GO:0032446,GO:0032459,GO:0032460,GO:0032462,GO:0032463,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033333,GO:0033334,GO:0033339,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035107,GO:0035113,GO:0035118,GO:0035138,GO:0035239,GO:0035295,GO:0036211,GO:0042471,GO:0042472,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043269,GO:0043271,GO:0043393,GO:0043412,GO:0043496,GO:0043583,GO:0043632,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048839,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051603,GO:0060173,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071599,GO:0071600,GO:0071704,GO:0080008,GO:0090073,GO:0090596,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234 EggNOG free text desc. proteasome-mediated ubiquitin-dependent protein catabolic process EggNOG OGs KOG1400@1,KOG1400@2759 COG Functional cat. ADK Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04121 Exons 4 Model size 2046 Cds size 1194 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9398.17159.1
>prot_H-paniculata_contig9398.17159.1 ID=prot_H-paniculata_contig9398.17159.1|Name=mRNA_H-paniculata_contig9398.17159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=398bp
MSWNHDGSASIVGVGTAAEVRWRHEDGGEEGYLHQSVAVMARGRHRFRLL back to top mRNA from alignment at H-paniculata_contig9398:2689..8327+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9398.17159.1 ID=mRNA_H-paniculata_contig9398.17159.1|Name=mRNA_H-paniculata_contig9398.17159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5639bp|location=Sequence derived from alignment at H-paniculata_contig9398:2689..8327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)GGGGGGGGGGCGGAAGGCAGGGCGGGGCGCGCGGCAAATCGGCGGGATTG
GCAGGATACGGGAATAAGTTCGGCCATTGGATGCGGGCATCTGGGAGTGG
TGAATGGG ATGTCTTGGAACCATGACGG GTGAGAGAACAACTGTTGTTTT
TTTCAGCCTGTGGATTGATTCACCTTTTGTTTTTGGCGCTCCTCCATATT
CATAGCTTAGCCTGTATGTAGTAGCCATAGCTGAGCGGGCTCCAGCTGCG
CACTCTCCGGGATTCGCTTTCGCGTGCCGGACAGACATAAAGACCCCTGC
GCTGCACGTCCTCGAGGTGATTGATCCTCAGCACCCACTATCCACATACT
GGCTTGCACCAGCCGACGTGTATTCTTCGTATGTATGGTATCACTCATAG
TGCATGGCATCCTTGGTTGAGCTCATGCCGGGGGTAATGTACCAAGCTGT
TCTCGGTGGCGTGGTGTATTTTATGTTGGAGAGGGTGGCTTATGGCGATT
CGAAATTCGCCCGTACCGAAAAAAAGAAGAAAAACGTGAGCGCGCGCCGT
TCTGCATTGTCCTGTACTGTACAATACTGTATCAGCAGTATAATAGTATA
ATAGTATAATGGTGTCCTTGTTTTCGTTGTCGCTGCGATCGAAGAAGACC
TGTGCACAAACTCCACCTGACTTTTTGTACGACCTCGCATTTTTGGTAGC
ATGTTGTAATATCGATTTTAAGGTGGGCAGGGGAATGACTAAAAGAAAGG
AAAAAAAACGTAACTGAAGAGTAACGCGCAACTCATTTGGGAATTTGTAT
CTTTGTGCTGCAGGAGCAGTAGCTTTGTTTTTGAGTCACTCAAGACGAAA
CAAAAAAAAAAGGAGAAAAGAGCTCGTCGATGGATGGATGGTGAGCCGTA
AATGACTTGGTCGCGCAGGAGGAGCTCAAAAGTAAAGTGAAATAGAACTG
CCTATGGTTGATTTATGGAGAGGGGCACCGATGGATGATGACATACGAGT
CGGTAGCTAGCCTAAAAATTACGCGGAAAACGACACCGTTTGGTGCATAT
GTGATTTTTATAACGCGCTCATCTCTGTTGGACGCGTGTGCACGCGCAAG
CCGTGTGTGTGTATGTGTGTATGCTTCATTTTGGTATGTAGAGCCTGCGG
CTTTATTTATCGTGGACGATGTTTCGTTGCTGACCAATTTGCCCGATTGT
CGAACATGAAAACAAGCAAAAGAGCCACGGAGTTCGATTGTACAACTTGT
TGGAAAAAAACAGATCAGCCTCGATTGTGGGGGTGGGTACCGCCGCCGAG
GTTCGTTGGCGTCACGAGGACGGCGGCGAAGAAGGATACTTGCATCAAAG
TGTGGCCGTCATGGCCCGCGGTCGTCACCGGTTCCGGTTGTTGGATTGCC
GTGGAATCATGAG GTGGGTGGGTGGGTGGGTGGATGAGTTGGTTGGGAGT
AGGACTATTGTAGGAGGGAGGGGGGGGACTGTGTAACGAGAGCTGCTTCG
CAAAGCGGCTCAACAAATTTCTAATGAAATAGTATCCAATGGTATGCGTT
CAAGCGTCCCCGAAGGTGCAGAAATTACGATTCAGAATGACCATGCTGTT
ATTGTTTGAAGTGGAAATAAATACGTTGCCTACCCGCTTTGCAAAGCGAC
CCAAAAACACTTGAACCATGCACGTGGAGTGCGACAAGCAGCTTCGAGGA
CGGAGGGGCTGTGACAATAATAGAGCGAAATCGACGAGCGCCTTGCGAAC
GCCCCCCCTATGTACAACAACCAACCACCTCTCCTTTCCTTCTTCAGTTA
TGTTACTTGGACTTACTGGGAGACTGTTTTAGCTCGGGGAACGTTTCTTA
CGTACGTCGTTGGTTTGTAGAGAGTCGCGCTATTTCGCAATTGTTTCGAT
TCTAATGTAGCTGCGTATGGGGCCAAGGGTCAAAAGGACAGAAGAAAGCA
TATACATGGAAGGCGACGAGCAGCTTCGAGAACTGAGGGACTGTAATGAT
AGTATAGGGGCGAGGTTGACGAGCGCCTTGCGTACGCTCCCCCTGCATAT
TCTAACCATCTGCCTCTCTCTCCCCGATTTCCCAACCCGTGTGTTAAATT
AATAGTCTCTAGTCTCCCCCGAGGACTTAGAATGCTGCTTTGGCTTACAG
CACTCCCCTTACGGAACTGTGACAAGGCGGGTAGAGAGCGCCTGACCGTG
TATCTGCTAGAAGTATGTGGGTATATAGGTAGCCACTCCCGAGTTTGTGT
TTCTGATGTCGTTCGTTACTTCATGCGTGTGTCGAAGGGTAGGCCTGCTC
CTTGAATTCTTCTCTGTAACCGGGGATGGGTTACAGTAACAGTTGCGTGT
AGCTAAAGTAGCAGGTTGGACCCACTGCTGTTTCTGGGGATAACTCTTCT
AACTTGTTGAAAACAAATGTTGCATTCAAAGGATAAATATCCAAAACATA
TGAAGGAAAAGCACCAACATATTGGTTTGAGGACACATCAAGATGGATGT
ATATATATATATATATTGGGAATGTATATGCGATCGATATATAGCCCTGT
AAAGAACAAGCCGGTCAAGCGCTGTTTTTTCGACAGATCTACTACGCCTT
GGCTCCCCCTCATTTTTCTTTTGAAAATGACAAGGTTTTTGCCTTGTATA
TTTTCGACCATTTATTGTTTAATCTTTTTTTTTTTCTTTTTTTCCTTCTT
GCTCCTATTAATAGCTGGTGTCACTGTCCTCACAGATGGACCTATGTATA
TTGACCTACATACGCACTACAGTACTGACAAAACAGTAATTTTTTTTGTT
CCCTGTTTGTAATCGTTGCCCGGAATTAAGTGTTCCCTGCGACCTGTGAA
AATTTTATTTACACGAAGAGAAACGCGGAGTTTTTCGTTTTGAGGTACGT
GAAAAATGATTGTAGTGTCGTTGTTTTTTTTTTCCCCGACGAAACACGTG
TAAATGGAAGAAAATAAAGAAGGTAGAATAGGAAGCTTATATAGGTTTGA
GTTCACAGGTTGCAAAGCAGCTCTCGAAAACTAGCAAGGCATGCAAGGGG
GGTAGTACATCAGTTTATGTCGAGCCTAGCGAAGAGGGTGACGGGGAAGT
AATCCGCCGCGGTGACGAAAATAGCACAAGCCCTCACGTCAGGTTAACCG
TGCCCGCCAAGAAGCAAAGTGCTGAGGGTGATCCTATGTTGCCGTTGCGT
GGTATAGGATCCTGGCGTCCTCGTTCGCTTTCTGTTGTGTGTGGTAAACA
AAAATTATGTGGCGGCGAAAAGAAATTTCGTCAAATCTTAATTTTATTCT
ACCGCCTCGGACTTCCTGAATGCTTTACCCACATGAGACCCGACCGTGAA
TTTGAATGCGACCGTGATTCTCAGTGAAGTAAAGTTTCTTTCGAATTCAT
CCCGAAAACAAAGCGCACGTTTTTTCCCGTGCTGCGATTCTGAATAAGGC
AAGGTTTCTTTGCAATGCATCCTGAAGGTAATACATACGCCCATCCCAAT
TTGGAGCACCCGCTAGTCCAGCACCAAGTTCAACGCAAGGCAGGGTATGT
CGTCTTCACGCTCGCTCTGACTTCCATAATTGTTTTTACATCGTATTCCA
GCACCATTTTACTACGCTTCGCGTCCACTTTTGGGAGGGATGGCAGGGGG
GAGGGGGGGAATGGGAAAGCGTAGTCGTACCTGTGTTATACAATTTTTGT
CACAATCCCTCGTCCTTCTTTCGTATACGTAGTACTCACATTCTGAAGCT
ATATACCCAGTACTTACAGTCTATAATCATGTCTTAAGATACCCTTTCCC
CTCCTCCCGCCCTCCGCCCCCCGTCCGAGGAGAACAGAGGCGACGTGTGG
TATTACAAGGTGGTCATCTGCCCGGACCTTTGTCCGCCTGCCCCTTTGCG
AGCTCCCGTACCTCGGCTGTTGCGCGACATGACCAGCGGAGACAAAAACG
GTAGCATGGGCAGCATGAACTGTAGAAAGCGCGAATATGGGTGCGTAGGC
GGCGGCAGCGGTGAGGAGGGCAGGCGGGCGGCAAAGGAGGCAGGGAGAAG
AGGTTCGTGCCGTCACTGGGTAATGTCAATCCCGCGGTTCGTCGTGGCCA
TTAACTCTCCCGACGCGCTCGCAGCGAGAGCTGGTCACCTCCTTCGGGAA
GCGCGGGAGTCGCCCAGACTCCAGCCGTCAGCTACCAACGCTCATCCAGC
AGCGGTGGCAGTAGGTCCGTTGGCGATGGTGAATGCGGATGAGGTATCGG
CATTGGGCTCGGCGACGAACGGTACCGAGGAGGGTGGGGAGCGGAGACGG
TCGAGCAGAGCGACAATGGAGAGGTTCCTAGCAGCGCTCGAGCGGGGTTT
TTACCGCAGCGATGGTGGTAATGGTGATGCTGGTACTGGTGCTGGTGCTG
AGAGGAGAGAAATAACTGGGGGCGGTAGTGGAGCTCCAGTTGCGAGGGCT
GTTGCACCACGGGCAACCGTTGGAGAAGTAGCCGCAGGACGGGCGGGGCA
TGGGAGTGTCGTGGTAAACGAGGTGCTGGAGGAAAGGGGTGGTGGAGGTG
TTGACGGCACCGGTGCTAGGAGTAATGAGAGGAACGAGACCTCGTATCCC
GCAGTAGGAGGTGATATGGAAGGGGACGAAGAGGGTTGGCGGCACGGCGG
GGTCGGCACCGGGTATGGAGGAGGAGAAGAAGGCAACGAGGGGCAGGTTG
GGCGTAGAAAGCCGGACCCAACGCATTTTTCGTTTTGGCTGGCCGCTAAC
CTTCCCCTCGATGACAGCGCGCGGCAGGAGCTTCTGGACATGGATTCGGT
GGTCTCGCGGCTCAGGTTAGACGTTAGCGGTAGATCCAGAGTGGTTGCTT
TTCGGTTATAA AGGGGTTTAGCTCTTTTGGTGGGATCGAAAGTTTAGGTG
CTACAACGGAAGTGTGTGCCCCCGAGAGGTGGGTATGTCGGGGTCGGACA
GTCCGACGTCTCCCGCCTCACCCTATATATGTGCAAACTCCCCTCCAAAA
ACACCATA GTCTACTTAACGTCTCATGAATCAGAATTGCTAGTTAACCTC
CAGGTATTGCATAACCGATTGGTATTAATGAACTATTTGTAGTACCAAAC
ACAGAATTCATTTTTCGTGGGTCTCGTCTGTTAGCATCATACCTGTACCT
GTTATTGGATGATGTACATACCGTTTTGTCCAGACGTTTACAGGTGGTAT
CCAGGTAACGTACAAGTCAATGAAAACGGTACACTAAGCATGCATCCTGA
TAATTGATGTATACTCACCACGTATCATAGTACTTTTTCTTGTATCTAAC
GAGAAAGTGCAGTAGCAGAGTAGTATGGTCAATATGTCACAAAACGACGC
ATAATAATACAACATTCAGGGTATATAATATATATGTTCACATTTTGTAA
CAGCTACGGTGGTAACGATCTCCGAAATTTTTTGTTATACTAAACAATAT
ATAGTGCTCCTTTGTAAATGGTGAAGTCGAGAGCTACATTGCTAGCAAGA
GCTCAATCTTATTCAAGGGTGCACGGGGTGCAGGGTGCAGGGGCTTGCTC
GTCCCCGAAAAAATGTTAAATTGAGTTTTTTTTTTCCCAAGTCATCAGAA
GCGTGATGATCAATATATCCGGTGGTAATGCCACCCTTC back to top Coding sequence (CDS) from alignment at H-paniculata_contig9398:2689..8327+
>mRNA_H-paniculata_contig9398.17159.1 ID=mRNA_H-paniculata_contig9398.17159.1|Name=mRNA_H-paniculata_contig9398.17159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2388bp|location=Sequence derived from alignment at H-paniculata_contig9398:2689..8327+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top