Homology
BLAST of mRNA_H-paniculata_contig9398.17158.1 vs. uniprot
Match:
A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE)
HSP 1 Score: 72.4 bits (176), Expect = 1.040e-10
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 2
Query: 572 LAPPSIHAYLGEACP-QTVRSRADLEVGSVVELPIFPLPGVVLFPGESLPLRLRPDSPYANLVRSML 769
L P+ HAYLGEA + SR DLE GS VE+PI LPGVVLFPGESLPLRL + YA+LV S L
Sbjct: 109 LPTPATHAYLGEATTGSSSLSRKDLEEGSTVEIPILALPGVVLFPGESLPLRLH-NPAYADLVGSFL 174
BLAST of mRNA_H-paniculata_contig9398.17158.1 vs. uniprot
Match:
D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI)
HSP 1 Score: 70.5 bits (171), Expect = 4.520e-10
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 2
Query: 590 HAYLGEACP-QTVRSRADLEVGSVVELPIFPLPGVVLFPGESLPLRLRPDSPYANLVRSML 769
HAYLGEA + SR DLE GS VE+PI LPGVVLFPGESLPLRL + YA+LV S L
Sbjct: 56 HAYLGEATTGSSSLSRKDLEEGSTVEIPILALPGVVLFPGESLPLRLH-NPAYADLVESFL 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9398.17158.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.04e-10 / Id = 62.69 Expect = 4.52e-10 / Id = 65.57 Sequence A0A6H5KP54_9PHAE D8LLP2_ECTSI
Match Name E-value Identity Description
A0A6H5KP54_9PHAE 1.040e-10 62.69 CULT domain-containing protein n=1 Tax=Ectocarpus ... [more] D8LLP2_ECTSI 4.520e-10 65.57 Protein cereblon n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 72.4 Seed ortholog evalue 3.2e-10 Seed eggNOG ortholog 2880.D8LLP2 Preferred name CRBN KEGG ko ko:K11793 Hectar predicted targeting category other localisation GOs GO:0000151,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009987,GO:0010498,GO:0016567,GO:0019538,GO:0019941,GO:0030163,GO:0031333,GO:0031461,GO:0031464,GO:0031974,GO:0031981,GO:0032092,GO:0032446,GO:0032459,GO:0032460,GO:0032462,GO:0032463,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033333,GO:0033334,GO:0033339,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035107,GO:0035113,GO:0035118,GO:0035138,GO:0035239,GO:0035295,GO:0036211,GO:0042471,GO:0042472,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043269,GO:0043271,GO:0043393,GO:0043412,GO:0043496,GO:0043583,GO:0043632,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048839,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051603,GO:0060173,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071599,GO:0071600,GO:0071704,GO:0080008,GO:0090073,GO:0090596,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234 EggNOG free text desc. proteasome-mediated ubiquitin-dependent protein catabolic process EggNOG OGs KOG1400@1,KOG1400@2759 Ec32 ortholog description Peptidase S16, lon N-terminal Ec32 ortholog Ec-04_005010.2 COG Functional cat. ADK Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04121 Exons 1 Model size 822 Cds size 714 Stop 0 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9398.17158.1
>prot_H-paniculata_contig9398.17158.1 ID=prot_H-paniculata_contig9398.17158.1|Name=mRNA_H-paniculata_contig9398.17158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MDRHDNEEETAAVLPLVALQEEGEAGQSAINTDESAVPVGTMDLPVRDPG back to top mRNA from alignment at H-paniculata_contig9398:1860..2679+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9398.17158.1 ID=mRNA_H-paniculata_contig9398.17158.1|Name=mRNA_H-paniculata_contig9398.17158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=820bp|location=Sequence derived from alignment at H-paniculata_contig9398:1860..2679+ (Halopteris paniculata Hal_grac_a_UBK monoicous)AGGAGGCTGCAACAAGAACACGCACACGGAATAGTCGTTGCCCTCCGCTT
TCTTCAATTCCCGCTAACGTCACCACCGCACGGCGTAGTTCACAGCTCCT
CCGGCA ATGGATCGACACGATAACGAGGAGGAAACAGCAGCAGTGCTGCC
ACTAGTAGCGCTCCAAGAAGAAGGAGAAGCAGGGCAGTCCGCCATCAATA
CCGATGAGTCGGCGGTGCCCGTCGGGACAATGGACCTTCCAGTTCGCGAT
CCGGGTAACACCAGCAACAGGATCATCAGAGAAGACCAACCACTGCTACT
ACTGCCGCCGCCGCCGCCGCCGCCGCCGCAAGCCACCATTGCGCTGAGCC
GTGGACCACGCCGCCGCCATGGCAACCCGCACATTTCTGATGCGAGTGTT
GCACAAAGGCAAGACGAACCACCCGCGGACGAAGAGTACAAGGAGTCTCT
TCCCGGAGAAGAATTAAAGTCGGAGTCGGAGTCGGAGTCGGAATCGGAAT
CGGAATCGGAATCGGAATCGGAATCGGAATCTTTCCCGTCGTCGTCATCA
CCGCCGCCGCAACCACGACAACTCGCGCCGCCATCGATCCACGCGTATCT
CGGTGAGGCCTGCCCCCAAACGGTCCGGTCAAGAGCGGACCTCGAGGTCG
GGTCGGTGGTCGAGCTACCCATCTTCCCGCTGCCGGGAGTGGTCCTCTTC
CCTGGGGAATCGCTTCCGCTGAGGCTGAGGCCGGATTCGCCGTACGCCAA
CCTCGTGCGATCGATGCTTTCTGACGATGACGGCAACGGCGACGAGAGAA
GAGGGCAGCGGGGGGCCGCG back to top Coding sequence (CDS) from alignment at H-paniculata_contig9398:1860..2679+
>mRNA_H-paniculata_contig9398.17158.1 ID=mRNA_H-paniculata_contig9398.17158.1|Name=mRNA_H-paniculata_contig9398.17158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig9398:1860..2679+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top