mRNA_H-paniculata_contig9398.17158.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9398.17158.1
Unique NamemRNA_H-paniculata_contig9398.17158.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9398.17158.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-10
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 2 
Query:  572 LAPPSIHAYLGEACP-QTVRSRADLEVGSVVELPIFPLPGVVLFPGESLPLRLRPDSPYANLVRSML 769
            L  P+ HAYLGEA    +  SR DLE GS VE+PI  LPGVVLFPGESLPLRL  +  YA+LV S L
Sbjct:  109 LPTPATHAYLGEATTGSSSLSRKDLEEGSTVEIPILALPGVVLFPGESLPLRLH-NPAYADLVGSFL 174
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BLAST of mRNA_H-paniculata_contig9398.17158.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.520e-10
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:  590 HAYLGEACP-QTVRSRADLEVGSVVELPIFPLPGVVLFPGESLPLRLRPDSPYANLVRSML 769
            HAYLGEA    +  SR DLE GS VE+PI  LPGVVLFPGESLPLRL  +  YA+LV S L
Sbjct:   56 HAYLGEATTGSSSLSRKDLEEGSTVEIPILALPGVVLFPGESLPLRLH-NPAYADLVESFL 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9398.17158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KP54_9PHAE1.040e-1062.69CULT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLP2_ECTSI4.520e-1065.57Protein cereblon n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9398contigH-paniculata_contig9398:1860..2679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog2880.D8LLP2
Preferred nameCRBN
KEGG koko:K11793
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009987,GO:0010498,GO:0016567,GO:0019538,GO:0019941,GO:0030163,GO:0031333,GO:0031461,GO:0031464,GO:0031974,GO:0031981,GO:0032092,GO:0032446,GO:0032459,GO:0032460,GO:0032462,GO:0032463,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033333,GO:0033334,GO:0033339,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035107,GO:0035113,GO:0035118,GO:0035138,GO:0035239,GO:0035295,GO:0036211,GO:0042471,GO:0042472,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043269,GO:0043271,GO:0043393,GO:0043412,GO:0043496,GO:0043583,GO:0043632,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048839,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051603,GO:0060173,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071599,GO:0071600,GO:0071704,GO:0080008,GO:0090073,GO:0090596,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG1400@1,KOG1400@2759
Ec32 ortholog descriptionPeptidase S16, lon N-terminal
Ec32 orthologEc-04_005010.2
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size822
Cds size714
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.7318234-UTR-H-paniculata_contig9398:1859..19651622931167.7318234-UTR-H-paniculata_contig9398:1859..1965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9398 1860..1965 +
1691481620.8467705-UTR-H-paniculata_contig9398:1859..19651691481620.8467705-UTR-H-paniculata_contig9398:1859..1965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9398 1860..1965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.7491224-CDS-H-paniculata_contig9398:1965..26791622931167.7491224-CDS-H-paniculata_contig9398:1965..2679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9398 1966..2679 +
1691481620.860586-CDS-H-paniculata_contig9398:1965..26791691481620.860586-CDS-H-paniculata_contig9398:1965..2679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9398 1966..2679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9398.17158.1prot_H-paniculata_contig9398.17158.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9398 1966..2679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9398.17158.1

>prot_H-paniculata_contig9398.17158.1 ID=prot_H-paniculata_contig9398.17158.1|Name=mRNA_H-paniculata_contig9398.17158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MDRHDNEEETAAVLPLVALQEEGEAGQSAINTDESAVPVGTMDLPVRDPG
NTSNRIIREDQPLLLLPPPPPPPPQATIALSRGPRRRHGNPHISDASVAQ
RQDEPPADEEYKESLPGEELKSESESESESESESESESESESFPSSSSPP
PQPRQLAPPSIHAYLGEACPQTVRSRADLEVGSVVELPIFPLPGVVLFPG
ESLPLRLRPDSPYANLVRSMLSDDDGNGDERRGQRGAA
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mRNA from alignment at H-paniculata_contig9398:1860..2679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9398.17158.1 ID=mRNA_H-paniculata_contig9398.17158.1|Name=mRNA_H-paniculata_contig9398.17158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=820bp|location=Sequence derived from alignment at H-paniculata_contig9398:1860..2679+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGGCTGCAACAAGAACACGCACACGGAATAGTCGTTGCCCTCCGCTT
TCTTCAATTCCCGCTAACGTCACCACCGCACGGCGTAGTTCACAGCTCCT
CCGGCAATGGATCGACACGATAACGAGGAGGAAACAGCAGCAGTGCTGCC
ACTAGTAGCGCTCCAAGAAGAAGGAGAAGCAGGGCAGTCCGCCATCAATA
CCGATGAGTCGGCGGTGCCCGTCGGGACAATGGACCTTCCAGTTCGCGAT
CCGGGTAACACCAGCAACAGGATCATCAGAGAAGACCAACCACTGCTACT
ACTGCCGCCGCCGCCGCCGCCGCCGCCGCAAGCCACCATTGCGCTGAGCC
GTGGACCACGCCGCCGCCATGGCAACCCGCACATTTCTGATGCGAGTGTT
GCACAAAGGCAAGACGAACCACCCGCGGACGAAGAGTACAAGGAGTCTCT
TCCCGGAGAAGAATTAAAGTCGGAGTCGGAGTCGGAGTCGGAATCGGAAT
CGGAATCGGAATCGGAATCGGAATCGGAATCTTTCCCGTCGTCGTCATCA
CCGCCGCCGCAACCACGACAACTCGCGCCGCCATCGATCCACGCGTATCT
CGGTGAGGCCTGCCCCCAAACGGTCCGGTCAAGAGCGGACCTCGAGGTCG
GGTCGGTGGTCGAGCTACCCATCTTCCCGCTGCCGGGAGTGGTCCTCTTC
CCTGGGGAATCGCTTCCGCTGAGGCTGAGGCCGGATTCGCCGTACGCCAA
CCTCGTGCGATCGATGCTTTCTGACGATGACGGCAACGGCGACGAGAGAA
GAGGGCAGCGGGGGGCCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig9398:1860..2679+

>mRNA_H-paniculata_contig9398.17158.1 ID=mRNA_H-paniculata_contig9398.17158.1|Name=mRNA_H-paniculata_contig9398.17158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig9398:1860..2679+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCGACACGATAACGAGGAGGAAACAGCAGCAGTGCTGCCACTAGT
AGCGCTCCAAGAAGAAGGAGAAGCAGGGCAGTCCGCCATCAATACCGATG
AGTCGGCGGTGCCCGTCGGGACAATGGACCTTCCAGTTCGCGATCCGGGT
AACACCAGCAACAGGATCATCAGAGAAGACCAACCACTGCTACTACTGCC
GCCGCCGCCGCCGCCGCCGCCGCAAGCCACCATTGCGCTGAGCCGTGGAC
CACGCCGCCGCCATGGCAACCCGCACATTTCTGATGCGAGTGTTGCACAA
AGGCAAGACGAACCACCCGCGGACGAAGAGTACAAGGAGTCTCTTCCCGG
AGAAGAATTAAAGTCGGAGTCGGAGTCGGAGTCGGAATCGGAATCGGAAT
CGGAATCGGAATCGGAATCGGAATCTTTCCCGTCGTCGTCATCACCGCCG
CCGCAACCACGACAACTCGCGCCGCCATCGATCCACGCGTATCTCGGTGA
GGCCTGCCCCCAAACGGTCCGGTCAAGAGCGGACCTCGAGGTCGGGTCGG
TGGTCGAGCTACCCATCTTCCCGCTGCCGGGAGTGGTCCTCTTCCCTGGG
GAATCGCTTCCGCTGAGGCTGAGGCCGGATTCGCCGTACGCCAACCTCGT
GCGATCGATGCTTTCTGACGATGACGGCAACGGCGACGAGAGAAGAGGGC
AGCGGGGGGCCGCGATGGATCGACACGATAACGAGGAGGAAACAGCAGCA
GTGCTGCCACTAGTAGCGCTCCAAGAAGAAGGAGAAGCAGGGCAGTCCGC
CATCAATACCGATGAGTCGGCGGTGCCCGTCGGGACAATGGACCTTCCAG
TTCGCGATCCGGGTAACACCAGCAACAGGATCATCAGAGAAGACCAACCA
CTGCTACTACTGCCGCCGCCGCCGCCGCCGCCGCCGCAAGCCACCATTGC
GCTGAGCCGTGGACCACGCCGCCGCCATGGCAACCCGCACATTTCTGATG
CGAGTGTTGCACAAAGGCAAGACGAACCACCCGCGGACGAAGAGTACAAG
GAGTCTCTTCCCGGAGAAGAATTAAAGTCGGAGTCGGAGTCGGAGTCGGA
ATCGGAATCGGAATCGGAATCGGAATCGGAATCGGAATCTTTCCCGTCGT
CGTCATCACCGCCGCCGCAACCACGACAACTCGCGCCGCCATCGATCCAC
GCGTATCTCGGTGAGGCCTGCCCCCAAACGGTCCGGTCAAGAGCGGACCT
CGAGGTCGGGTCGGTGGTCGAGCTACCCATCTTCCCGCTGCCGGGAGTGG
TCCTCTTCCCTGGGGAATCGCTTCCGCTGAGGCTGAGGCCGGATTCGCCG
TACGCCAACCTCGTGCGATCGATGCTTTCTGACGATGACGGCAACGGCGA
CGAGAGAAGAGGGCAGCGGGGGGCCGCG
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