mRNA_H-paniculata_contig12723.1714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12723.1714.1
Unique NamemRNA_H-paniculata_contig12723.1714.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12723.1714.1 vs. uniprot
Match: D7FJZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ5_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 7.000e-11
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   25 GSSEVLDPARVAMSMLKEEDHVWTIETCMETINLLRARNKCV 150
            GS    D AR AM +LKEEDHVWTIETCMETINLLRARN  +
Sbjct:   31 GSPTSFDAARAAMCLLKEEDHVWTIETCMETINLLRARNNAL 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12723.1714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJZ5_ECTSI7.000e-1173.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12723contigH-paniculata_contig12723:6962..7111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003070.1
Exons1
Model size150
Cds size150
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.4257429-CDS-H-paniculata_contig12723:6961..71111622928995.4257429-CDS-H-paniculata_contig12723:6961..7111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12723 6962..7111 +
1691480695.0201547-CDS-H-paniculata_contig12723:6961..71111691480695.0201547-CDS-H-paniculata_contig12723:6961..7111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12723 6962..7111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12723.1714.1prot_H-paniculata_contig12723.1714.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12723 6962..7111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12723.1714.1

>prot_H-paniculata_contig12723.1714.1 ID=prot_H-paniculata_contig12723.1714.1|Name=mRNA_H-paniculata_contig12723.1714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MSSSGEKEGSSEVLDPARVAMSMLKEEDHVWTIETCMETINLLRARNKCV
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mRNA from alignment at H-paniculata_contig12723:6962..7111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12723.1714.1 ID=mRNA_H-paniculata_contig12723.1714.1|Name=mRNA_H-paniculata_contig12723.1714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig12723:6962..7111+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTCATCAGGAGAGAAGGAGGGGTCTTCCGAAGTCCTCGACCCTGC
GCGTGTAGCTATGTCCATGCTAAAGGAGGAGGACCATGTATGGACGATAG
AAACGTGCATGGAAACCATTAACCTCCTGCGCGCGCGAAACAAGTGCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig12723:6962..7111+

>mRNA_H-paniculata_contig12723.1714.1 ID=mRNA_H-paniculata_contig12723.1714.1|Name=mRNA_H-paniculata_contig12723.1714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig12723:6962..7111+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTCATCAGGAGAGAAGGAGGGGTCTTCCGAAGTCCTCGACCCTGC
GCGTGTAGCTATGTCCATGCTAAAGGAGGAGGACCATGTATGGACGATAG
AAACGTGCATGGAAACCATTAACCTCCTGCGCGCGCGAAACAAGTGCGTG
ATGAGCTCATCAGGAGAGAAGGAGGGGTCTTCCGAAGTCCTCGACCCTGC
GCGTGTAGCTATGTCCATGCTAAAGGAGGAGGACCATGTATGGACGATAG
AAACGTGCATGGAAACCATTAACCTCCTGCGCGCGCGAAACAAGTGCGTG
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